Non-Coding RNA Search

Ss1.1-Pig4-TMW8037J09.3

Sequence:


               
               TTTTGCTTCTACACCCTCCAGACCACATAAGCTCCAGGAGGGAAAAAACAGCCCGAGGGA
AAAATGTTATTGCAGCTTGTATTATTGCCCCCTGGTCAAGTGATAAGCCTTTGCTCCGGT
GGCGTAGGAGTGTTCAAAAATTACTAATGCCAGCATTTTCACCTACGTTAGAATTTAACT
GGTCTGAAGTGGAGCCTGAGTATTAATGTTTTGAAAAGTATCCCCAGCGTGGAACATGCA
GTAGAGGTGGAGAACCACTGCTTTTATCAATGCAGAGAACTGGAACTTCTGATGATAATA
GTGGGTTTTAAAGGCTATTTTATAGCTTGGTTACTACGTCATGCTCCTTTTATAGATGCA
TGAAATTGTCTGCACTTTCTCTGAAGGAAAAATGGAGAGGAAGCACTTTCCTATTTCCTG
TTACCTCCGCTGTTGCTTGGTCCGTTAAAGAGGGTGATCAATACTGTTTGAAATCCTGCC
CCAAATGAAACCAAACTGGACCTTTTGGAGGTTGCCCTTCTAGATGGGTTTTGATTTGGG
GGGCTTAATGGAGTAGGGGTGATGATCTTGCACATTTATTACATCTGGATTTAAACCTAC
TCACTGTTTACATGACTTTGTACAATATAAAAGCTTGTTTGAGTAAAATGTTGATATGAA
TAAATACTTACACTGGTTTAATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGG
GCCTTTTAAAATTTTCCTGGGGGGGGCCAAATTTTCCCCCCCCCCTTTTTTTTTAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTGCTTCTACACCCTCCAGACCACATAAGCTCCAGGAGGGAAAAAACAGCCCGAGGGA
AAAATGTTATTGCAGCTTGTATTATTGCCCCCTGGTCAAGTGATAAGCCTTTGCTCCGGT
GGCGTAGGAGTGTTCAAAAATTACTAATGCCAGCATTTTCACCTACGTTAGAATTTAACT
GGTCTGAAGTGGAGCCTGAGTATTAATGTTTTGAAAAGTATCCCCAGCGTGGAACATGCA
GTAGAGGTGGAGAACCACTGCTTTTATCAATGCAGAGAACTGGAACTTCTGATGATAATA
GTGGGTTTTAAAGGCTATTTTATAGCTTGGTTACTACGTCATGCTCCTTTTATAGATGCA
TGAAATTGTCTGCACTTTCTCTGAAGGAAAAATGGAGAGGAAGCACTTTCCTATTTCCTG
TTACCTCCGCTGTTGCTTGGTCCGTTAAAGAGGGTGATCAATACTGTTTGAAATCCTGCC
CCAAATGAAACCAAACTGGACCTTTTGGAGGTTGCCCTTCTAGATGGGTTTTGATTTGGG
GGGCTTAATGGAGTAGGGGTGATGATCTTGCACATTTATTACATCTGGATTTAAACCTAC
TCACTGTTTACATGACTTTGTACAATATAAAAGCTTGTTTGAGTAAAATGTTGATATGAA
TAAATACTTACACTGGTTTAATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGG
GCCTTTTAAAATTTTCCTGGGGGGGGCCAAATTTTCCCCCCCCCCTTTTTTTTTAAAAAA

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               1-121, gnl|bosTau2|chr9 (20327176-20327054)
               

               
               1-121, gnl|dasNov1|scaffold_138064 (852-568)
               

               
               1-121, gnl|hg17|chr6 (111706692-111706997)
               

               
               1-121, gnl|Hg17|chr6 (111706736-111706854)
               

               
               1-121, gnl|loxAfr1|scaffold_17273 (1179-890)
               

               
               1-121, gnl|panTro1|chr5 (114055187-114055492)
               

               
               1-121, gnl|rheMac2|chr4 (152656150-152655841)
               

               
               1-121, gnl|rn3|chr20 (44114913-44114679)
               


               
               129-688, gnl|bosTau2|chr9 (20327015-20326443)
               

               
               129-688, gnl|Hg17|chr6 (111706890-111707918)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-121, gnl|bosTau2|chr9 (20327176-20327054)
               

               
               1-121, gnl|dasNov1|scaffold_138064 (852-568)
               

               
               1-121, gnl|hg17|chr6 (111706692-111706997)
               

               
               1-121, gnl|Hg17|chr6 (111706736-111706854)
               

               
               1-121, gnl|loxAfr1|scaffold_17273 (1179-890)
               

               
               1-121, gnl|panTro1|chr5 (114055187-114055492)
               

               
               1-121, gnl|rheMac2|chr4 (152656150-152655841)
               

               
               1-121, gnl|rn3|chr20 (44114913-44114679)
               


               
               129-688, gnl|bosTau2|chr9 (20327015-20326443)
               

               
               129-688, gnl|Hg17|chr6 (111706890-111707918)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eye (0.341006)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.341006)

	1-121, gnl\|bosTau2\|chr9 (20327176-20327054)
	1-121, gnl\|dasNov1\|scaffold_138064 (852-568)
	1-121, gnl\|hg17\|chr6 (111706692-111706997)
	1-121, gnl\|Hg17\|chr6 (111706736-111706854)
	1-121, gnl\|loxAfr1\|scaffold_17273 (1179-890)
	1-121, gnl\|panTro1\|chr5 (114055187-114055492)
	1-121, gnl\|rheMac2\|chr4 (152656150-152655841)
	1-121, gnl\|rn3\|chr20 (44114913-44114679)

	129-688, gnl\|bosTau2\|chr9 (20327015-20326443)
	129-688, gnl\|Hg17\|chr6 (111706890-111707918)