Non-Coding RNA Search

Ss1.1-Pig4-TMW8037K04.5

Sequence:


               
               GGGCTTTATTTGATAGTCTGGGAACTTATTTCAAACACTGAAGATCTGACTCAGGAAGTG
CTGGGACACAGTCCAGTGTGTTTATCCTGACCCCTGTTAGGACCGTCGCTGGTCGCCCCT
TGACTCCCGCTGTCCGCGCGAGCCGGTTTGTGCTCAGCGTCCAGTGCACATCCTTGCAAG
CGACGGCGCCATGAGTACGACTTCCAGCGTACGAGTTGAGTGGATCGCAGCGGTTACCAT
TGCTGCTGGGACAGCTGCAATTGGTTATCTAGCTTACAAAAGATTTTATGTTAAAGATCA
TCGCAACAAATCTATGGTAAACCCTCACATCCAGAAAGACAACCCCAAGGTAGTACATGC
TTTTGACATGGAGGATCTGGGAGATAAAGCTGTGTACTGCCGCTGTTGGAGGTCCAAAAA
GTTCCCACTCTGTGATGGATCGCACATAAAACACAATGAAGAAACTGGCGACAACGTGGG
ACCTCTGATCATTAAGAAAAAAGACACTTAAATGGACACTTTGGATGCTGCAAACCAACT
TGTCCTGATGTTTCCTGATTGTTTACTTAGAATGATTCACTTCCCCTGGGTTCTAGATGT
GGTACATTGCAAACTGCAGCTTTCATATTCAAGGCATTTGCCTTACTTGTTGAACCATCG
TGGTGCACATTTTGTTTAAACAAAAAAAAGGAAAAAGTAAAAACCAATCTCATGGCCTTT
GGGTTATTTTGGTCTTATAAGGATCCGTTTCTTTACATTCAAAAATAATAGCATTAGAAT
ATAGTTGTATGGTGAAGTTAACATATTAAATTTTTCTCAAAATCATGTGCAGATTGTACT
TATAAGTTTCAAAGAAAAATTATCACCATTTAATATTATTTGGCTAATCTAGAAAGTAAA
TTGGATGTTACTAAACTACATTAATCTCATAACAATCTAGGAAAATCCATTACGACCTTG
GCTTGCTTCTTCATAGTGATAATGACACTGAGAAAATACAGCTTTTGTGTTTTCAATCAA
AATGAACTTTGAATGTTAATTCTGCTTAATTATAAGTGGGCCAGGTCAATAATAAAGGGA
CAGTAGCTTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCTTTATTTGATAGTCTGGGAACTTATTTCAAACACTGAAGATCTGACTCAGGAAGTG
CTGGGACACAGTCCAGTGTGTTTATCCTGACCCCTGTTAGGACCGTCGCTGGTCGCCCCT
TGACTCCCGCTGTCCGCGCGAGCCGGTTTGTGCTCAGCGTCCAGTGCACATCCTTGCAAG
CGACGGCGCCATGAGTACGACTTCCAGCGTACGAGTTGAGTGGATCGCAGCGGTTACCAT
TGCTGCTGGGACAGCTGCAATTGGTTATCTAGCTTACAAAAGATTTTATGTTAAAGATCA
TCGCAACAAATCTATGGTAAACCCTCACATCCAGAAAGACAACCCCAAGGTAGTACATGC
TTTTGACATGGAGGATCTGGGAGATAAAGCTGTGTACTGCCGCTGTTGGAGGTCCAAAAA
GTTCCCACTCTGTGATGGATCGCACATAAAACACAATGAAGAAACTGGCGACAACGTGGG
ACCTCTGATCATTAAGAAAAAAGACACTTAAATGGACACTTTGGATGCTGCAAACCAACT
TGTCCTGATGTTTCCTGATTGTTTACTTAGAATGATTCACTTCCCCTGGGTTCTAGATGT
GGTACATTGCAAACTGCAGCTTTCATATTCAAGGCATTTGCCTTACTTGTTGAACCATCG
TGGTGCACATTTTGTTTAAACAAAAAAAAGGAAAAAGTAAAAACCAATCTCATGGCCTTT
GGGTTATTTTGGTCTTATAAGGATCCGTTTCTTTACATTCAAAAATAATAGCATTAGAAT
ATAGTTGTATGGTGAAGTTAACATATTAAATTTTTCTCAAAATCATGTGCAGATTGTACT
TATAAGTTTCAAAGAAAAATTATCACCATTTAATATTATTTGGCTAATCTAGAAAGTAAA
TTGGATGTTACTAAACTACATTAATCTCATAACAATCTAGGAAAATCCATTACGACCTTG
GCTTGCTTCTTCATAGTGATAATGACACTGAGAAAATACAGCTTTTGTGTTTTCAATCAA
AATGAACTTTGAATGTTAATTCTGCTTAATTATAAGTGGGCCAGGTCAATAATAAAGGGA
CAGTAGCTTCTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               CJ070_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               CJ070_HUMAN

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               166-808, gnl|bosTau2|chr16 (52559696-52560351)
               

               
               166-808, gnl|Hg17|chr2 (19947612-19948290)
               

               
               166-808, gnl|Mm7|chr11 (103989287-103988445)
               


               
               210-393, gnl|bosTau2|chr13 (42042059-42041877)
               

               
               210-393, gnl|Hg17|chr12 (41317181-41317002)
               

               
               210-393, gnl|Mm7|chr11 (103989257-103989082)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               166-808, gnl|bosTau2|chr16 (52559696-52560351)
               

               
               166-808, gnl|Hg17|chr2 (19947612-19948290)
               

               
               166-808, gnl|Mm7|chr11 (103989287-103988445)
               


               
               210-393, gnl|bosTau2|chr13 (42042059-42041877)
               

               
               210-393, gnl|Hg17|chr12 (41317181-41317002)
               

               
               210-393, gnl|Mm7|chr11 (103989257-103989082)

Expressed library(ies): 31 entry(ies)

More info

Expressed library(ies): 31 entry(ies)

Help | Less info


               
               vin (0.997672)
               

               
               cte (0.87822)
               

               
               ssp (0.677599)
               

               
               tes (0.623441)
               

               
               ste (0.540833)
               

               
               hea (0.408998)
               

               
               eye (0.341006)
               

               
               spc (0.340097)
               

               
               fco (0.314416)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               sug (0.254582)
               

               
               mgp (0.230681)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 31 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.997672)
               

               
               cte (0.87822)
               

               
               ssp (0.677599)
               

               
               tes (0.623441)
               

               
               ste (0.540833)
               

               
               hea (0.408998)
               

               
               eye (0.341006)
               

               
               spc (0.340097)
               

               
               fco (0.314416)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               sug (0.254582)
               

               
               mgp (0.230681)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	166-808, gnl\|bosTau2\|chr16 (52559696-52560351)
	166-808, gnl\|Hg17\|chr2 (19947612-19948290)
	166-808, gnl\|Mm7\|chr11 (103989287-103988445)

	210-393, gnl\|bosTau2\|chr13 (42042059-42041877)
	210-393, gnl\|Hg17\|chr12 (41317181-41317002)
	210-393, gnl\|Mm7\|chr11 (103989257-103989082)

	vin (0.997672)
	cte (0.87822)
	ssp (0.677599)
	tes (0.623441)
	ste (0.540833)
	hea (0.408998)
	eye (0.341006)
	spc (0.340097)
	fco (0.314416)
	isp (0.300752)
	bfe (0.299715)
	sug (0.254582)
	mgp (0.230681)
	col (0.195008)
	ldo (0.194005)
	nlu (0.191681)
	fbs (0.175346)
	rec (0.17307)
	fhi (0.169578)
	cje (0.165235)
	mga (0.160205)
	tbr (0.154178)
	ski (0.146735)
	hyp (0.142837)
	pty (0.142714)
	hlv (0.139256)
	che (0.136314)
	lyg (0.133103)
	bla (0.124347)
	jca (0.11396)
	jej (0.0989218)