Non-Coding RNA Search

Ss1.1-Pig4-TMW8037K08.3

Sequence:


               
               CAGGCTGCTCGGCCACCTTCTCGGTGCTGAAGAAGCGGCGGAACTGCAGTAACTGTGGAA
ACAGCTTCTGCTCTCGGTGCTGCTCCTTCAAGGTGCCCAGGTCCTCCATGGGGGCCACAG
GTGAGTGGTGCAGGGGATGGGGGGCAGCGGGAGTCTCCTGCCTCCCCTGAGGGGCTGCTG
CATGTGGGGAAAGCGCGGGGGTCAGTGAGAGGTCAAGGGAACCTGGGCTCTCCTCCGTCT
CCCTTTAACAAGGGAAAACGGGACTATTTGATGCATGGACAAGAGTATACATGACGTATC
AGATTATGAAGCGTGGTGATGAATACCCATGACTGCTTCTCTAAAGTTAGAAAATAGAGC
AGCGCCACTCCTGCCTTCCCCGGGAGAAGCTACCATCCTGCAGTTCATTCTTTTTCTCGT
TACCTTGGTGATGCATTTAACAGAATGAAAAGTAATTTTTTTTCCTTCTATAAAGGCTAT
ACATACTCATTGTAAACAAACAAAAAAAAGCCAAAGGAAGGAAAGCAGTCCTAAATCTCT
CCTCGGTCATTAAGGCCATGACGCATTCGGGACAAATACCATGCACGTTCTAAAAAATGG
GAGCATGTGCTACATACGGCTTTGTAATGTGTTACAATGTTAAATTGAACATTTCTTTTA
TCCTTCTGGTCATGCTAGTAACATATGCTTATTCTAGAAGATTTGGAAATTACTATACAG
AAGAAGAAGGAAGAGAAAAATAATCTTGTAATCTTACCCCTCAGAGATAATAACCACTGT
TAAAATATTTTGGAACATTTTCTTCTGGTATTTCATTTAAAAAGCATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGCTGCTCGGCCACCTTCTCGGTGCTGAAGAAGCGGCGGAACTGCAGTAACTGTGGAA
ACAGCTTCTGCTCTCGGTGCTGCTCCTTCAAGGTGCCCAGGTCCTCCATGGGGGCCACAG
GTGAGTGGTGCAGGGGATGGGGGGCAGCGGGAGTCTCCTGCCTCCCCTGAGGGGCTGCTG
CATGTGGGGAAAGCGCGGGGGTCAGTGAGAGGTCAAGGGAACCTGGGCTCTCCTCCGTCT
CCCTTTAACAAGGGAAAACGGGACTATTTGATGCATGGACAAGAGTATACATGACGTATC
AGATTATGAAGCGTGGTGATGAATACCCATGACTGCTTCTCTAAAGTTAGAAAATAGAGC
AGCGCCACTCCTGCCTTCCCCGGGAGAAGCTACCATCCTGCAGTTCATTCTTTTTCTCGT
TACCTTGGTGATGCATTTAACAGAATGAAAAGTAATTTTTTTTCCTTCTATAAAGGCTAT
ACATACTCATTGTAAACAAACAAAAAAAAGCCAAAGGAAGGAAAGCAGTCCTAAATCTCT
CCTCGGTCATTAAGGCCATGACGCATTCGGGACAAATACCATGCACGTTCTAAAAAATGG
GAGCATGTGCTACATACGGCTTTGTAATGTGTTACAATGTTAAATTGAACATTTCTTTTA
TCCTTCTGGTCATGCTAGTAACATATGCTTATTCTAGAAGATTTGGAAATTACTATACAG
AAGAAGAAGGAAGAGAAAAATAATCTTGTAATCTTACCCCTCAGAGATAATAACCACTGT
TAAAATATTTTGGAACATTTTCTTCTGGTATTTCATTTAAAAAGCATT

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               38-534, gnl|bosTau2|chr26 (10388770-10388250)
               

               
               38-534, gnl|Hg17|chr10 (99507388-99507935)
               


               
               542-828, gnl|bosTau2|chr26 (10388214-10387920)
               

               
               542-828, gnl|Hg17|chr10 (99507971-99508725)
               

               
               542-828, gnl|Mm7|chr19 (42083684-42083956)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-534, gnl|bosTau2|chr26 (10388770-10388250)
               

               
               38-534, gnl|Hg17|chr10 (99507388-99507935)
               


               
               542-828, gnl|bosTau2|chr26 (10388214-10387920)
               

               
               542-828, gnl|Hg17|chr10 (99507971-99508725)
               

               
               542-828, gnl|Mm7|chr19 (42083684-42083956)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               nep (0.183925)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               nep (0.183925)

	38-534, gnl\|bosTau2\|chr26 (10388770-10388250)
	38-534, gnl\|Hg17\|chr10 (99507388-99507935)

	542-828, gnl\|bosTau2\|chr26 (10388214-10387920)
	542-828, gnl\|Hg17\|chr10 (99507971-99508725)
	542-828, gnl\|Mm7\|chr19 (42083684-42083956)