Ss1.1-Pig4-TMW8037K13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTCGGCGGCGCGCGCCGAGCGGGGGGCACCGCGCGGGTGCAGCCACGATGGAAGGGGGT GCTTACGGAGCGGGCAAAGCCGGGGGCGCCTTCGACCCCTACACCCTGGTCCGGCAGCCG CACACCATCCTGCGCGTCGTGTCCTGGGTGTTCTCCATCGTGGTGTTCGGCTCCATCGTG AACGAGGGCTACCTCAACAGCCCCTCCGAGAGCGAGGAGTTCTGCGTCTACAACCGCAAC CCCAACGCCTGCGGCTATGGCGTGACCGTGGGCGTGCTCGCCTTCCTCACCTGCCTGCTC TACCTGGCCCTGGACGTCTACTTCCCGCAGATCAGCAGCGTGAAGGACCGGAAGAAGGCC GTCCTGTCGGACATCGGCGTCTCGGCCTTCTGGGCCTTCCTCTGGTTCGTGGGCTTCTGC TACCTGGCCAACCAGTGGCAGGTCTCCAAGCCCAAGGACAACCCACTGAACGAAGGGACG GACGCAGCCCGGGCCGCCATCGCCTTCTCCTTCTTCTCCATCTTCACGTGGAGCCTGACC GCAGCCTTGGCCGTGCGGAGATTCAAGGACCTTACCTTCCAGGAGGAGTACAGCACCCTG TTTCCTGCCTCGGCACAGCCGTAGGCCTGCCCTAGTCATGCCCGGTGGCTAGGCTGGGGG GCACCTACTGCCCACTGATCCGCCAGGATGCCAGGCATGCTGGGCAGGGGCAGGCTGGCT TGAGAGGCCGTTAAGACTCACCACCTATTCACTCATTGCCTCCTTTGTGTCCGTTCATTC AGTAAACATTTATTGAGCTGCAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTCGGCGGCGCGCGCCGAGCGGGGGGCACCGCGCGGGTGCAGCCACGATGGAAGGGGGT GCTTACGGAGCGGGCAAAGCCGGGGGCGCCTTCGACCCCTACACCCTGGTCCGGCAGCCG CACACCATCCTGCGCGTCGTGTCCTGGGTGTTCTCCATCGTGGTGTTCGGCTCCATCGTG AACGAGGGCTACCTCAACAGCCCCTCCGAGAGCGAGGAGTTCTGCGTCTACAACCGCAAC CCCAACGCCTGCGGCTATGGCGTGACCGTGGGCGTGCTCGCCTTCCTCACCTGCCTGCTC TACCTGGCCCTGGACGTCTACTTCCCGCAGATCAGCAGCGTGAAGGACCGGAAGAAGGCC GTCCTGTCGGACATCGGCGTCTCGGCCTTCTGGGCCTTCCTCTGGTTCGTGGGCTTCTGC TACCTGGCCAACCAGTGGCAGGTCTCCAAGCCCAAGGACAACCCACTGAACGAAGGGACG GACGCAGCCCGGGCCGCCATCGCCTTCTCCTTCTTCTCCATCTTCACGTGGAGCCTGACC GCAGCCTTGGCCGTGCGGAGATTCAAGGACCTTACCTTCCAGGAGGAGTACAGCACCCTG TTTCCTGCCTCGGCACAGCCGTAGGCCTGCCCTAGTCATGCCCGGTGGCTAGGCTGGGGG GCACCTACTGCCCACTGATCCGCCAGGATGCCAGGCATGCTGGGCAGGGGCAGGCTGGCT TGAGAGGCCGTTAAGACTCACCACCTATTCACTCATTGCCTCCTTTGTGTCCGTTCATTC AGTAAACATTTATTGAGCTGCAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 378-496, + strand, RNAz p=0.681787 | |
| 629-740, + strand, RNAz p=0.828375 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 378-496, + strand, RNAz p=0.681787 | |
| 629-740, + strand, RNAz p=0.828375 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_145738, + |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 147-354, gnl|bosTau2|chr19 (47869850-47869643) | |
| 147-354, gnl|canFam2|chr9 (5971745-5971563) | |
| 147-354, gnl|danRer3|chr1 (38769805-38769979) | |
| 147-354, gnl|dasNov1|scaffold_22712 (15530-15343) | |
| 147-354, gnl|echTel1|scaffold_308769 (120445-120619) | |
| 147-354, gnl|fr1|chrUn (79813065-79812871) | |
| 147-354, gnl|galGal2|chr1 (47388952-47388770) | |
| 147-354, gnl|hg17|chr17 (73678480-73678662) | |
| 147-354, gnl|Hg17|chr17 (73678492-73678699) | |
| 147-354, gnl|loxAfr1|scaffold_49406 (6899-7092) | |
| 147-354, gnl|mm7|chr11 (117921495-117921673) | |
| 147-354, gnl|Mm7|chr11 (117921503-117921710) | |
| 147-354, gnl|monDom2|scaffold_18 (7058552-7058734) | |
| 147-354, gnl|oryCun1|scaffold_121515 (836-654) | |
| 147-354, gnl|panTro1|chr19 (77228913-77229095) | |
| 147-354, gnl|rheMac2|chr16 (73463922-73464104) | |
| 147-354, gnl|rn3|chr7 (118380034-118380216) | |
| 147-354, gnl|tetNig1|chr18 (2195661-2195849) | |
| 147-354, gnl|xenTro1|scaffold_293 (4133-4315) | |
| 378-531, gnl|bosTau2|chr19 (47869273-47869126) | |
| 378-531, gnl|canFam2|chr9 (5971096-5970953) | |
| 378-531, gnl|canFam2|chr9 (5970953-5971093) | |
| 378-531, gnl|danRer3|chr1 (38773378-38773509) | |
| 378-531, gnl|danRer3|chrUn (107448288-107448136) | |
| 378-531, gnl|dasNov1|scaffold_13127 (20361-20216) | |
| 378-531, gnl|dasNov1|scaffold_13127 (20216-20371) | |
| 378-531, gnl|echTel1|scaffold_277153 (8709-8566) | |
| 378-531, gnl|echTel1|scaffold_277153 (8566-8719) | |
| 378-531, gnl|fr1|chrUn (191696513-191696364) | |
| 378-531, gnl|fr1|chrUn (191696364-191696523) | |
| 378-531, gnl|hg17|chr15 (28124451-28124594) | |
| 378-531, gnl|Hg17|chr17 (73679179-73679325) | |
| 378-531, gnl|hg17|chr9 (77995197-77995350) | |
| 378-531, gnl|loxAfr1|scaffold_8774 (47572-47459) | |
| 378-531, gnl|loxAfr1|scaffold_8774 (47438-47577) | |
| 378-531, gnl|mm7|chr11 (117922090-117922232) | |
| 378-531, gnl|mm7|chr11 (117922232-117922090) | |
| 378-531, gnl|Mm7|chr11 (117922083-117922230) | |
| 378-531, gnl|monDom2|scaffold_18 (7058989-7059130) | |
| 378-531, gnl|monDom2|scaffold_18 (7059132-7058992) | |
| 378-531, gnl|oryCun1|scaffold_129959 (9225-9083) | |
| 378-531, gnl|oryCun1|scaffold_129959 (9083-9236) | |
| 378-531, gnl|panTro1|chr11 (61880657-61880810) | |
| 378-531, gnl|panTro1|chr16 (18912260-18912117) | |
| 378-531, gnl|rheMac2|chr15 (86855197-86855350) | |
| 378-531, gnl|rheMac2|chr16 (73464622-73464762) | |
| 378-531, gnl|rn3|chr7 (118381193-118381341) | |
| 378-531, gnl|rn3|chr7 (118381341-118381191) | |
| 378-531, gnl|tetNig1|chr18 (9465906-9465756) | |
| 378-531, gnl|tetNig1|chr18 (9465757-9465926) | |
| 629-798, gnl|bosTau2|chr5 (69779251-69779432) | |
| 629-798, gnl|Hg17|chr22 (38098222-38098415) | |
| 629-798, gnl|Mm7|chr15 (80197757-80197917) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 147-354, gnl|bosTau2|chr19 (47869850-47869643) | |
| 147-354, gnl|canFam2|chr9 (5971745-5971563) | |
| 147-354, gnl|danRer3|chr1 (38769805-38769979) | |
| 147-354, gnl|dasNov1|scaffold_22712 (15530-15343) | |
| 147-354, gnl|echTel1|scaffold_308769 (120445-120619) | |
| 147-354, gnl|fr1|chrUn (79813065-79812871) | |
| 147-354, gnl|galGal2|chr1 (47388952-47388770) | |
| 147-354, gnl|hg17|chr17 (73678480-73678662) | |
| 147-354, gnl|Hg17|chr17 (73678492-73678699) | |
| 147-354, gnl|loxAfr1|scaffold_49406 (6899-7092) | |
| 147-354, gnl|mm7|chr11 (117921495-117921673) | |
| 147-354, gnl|Mm7|chr11 (117921503-117921710) | |
| 147-354, gnl|monDom2|scaffold_18 (7058552-7058734) | |
| 147-354, gnl|oryCun1|scaffold_121515 (836-654) | |
| 147-354, gnl|panTro1|chr19 (77228913-77229095) | |
| 147-354, gnl|rheMac2|chr16 (73463922-73464104) | |
| 147-354, gnl|rn3|chr7 (118380034-118380216) | |
| 147-354, gnl|tetNig1|chr18 (2195661-2195849) | |
| 147-354, gnl|xenTro1|scaffold_293 (4133-4315) | |
| 378-531, gnl|bosTau2|chr19 (47869273-47869126) | |
| 378-531, gnl|canFam2|chr9 (5971096-5970953) | |
| 378-531, gnl|canFam2|chr9 (5970953-5971093) | |
| 378-531, gnl|danRer3|chr1 (38773378-38773509) | |
| 378-531, gnl|danRer3|chrUn (107448288-107448136) | |
| 378-531, gnl|dasNov1|scaffold_13127 (20361-20216) | |
| 378-531, gnl|dasNov1|scaffold_13127 (20216-20371) | |
| 378-531, gnl|echTel1|scaffold_277153 (8709-8566) | |
| 378-531, gnl|echTel1|scaffold_277153 (8566-8719) | |
| 378-531, gnl|fr1|chrUn (191696513-191696364) | |
| 378-531, gnl|fr1|chrUn (191696364-191696523) | |
| 378-531, gnl|hg17|chr15 (28124451-28124594) | |
| 378-531, gnl|Hg17|chr17 (73679179-73679325) | |
| 378-531, gnl|hg17|chr9 (77995197-77995350) | |
| 378-531, gnl|loxAfr1|scaffold_8774 (47572-47459) | |
| 378-531, gnl|loxAfr1|scaffold_8774 (47438-47577) | |
| 378-531, gnl|mm7|chr11 (117922090-117922232) | |
| 378-531, gnl|mm7|chr11 (117922232-117922090) | |
| 378-531, gnl|Mm7|chr11 (117922083-117922230) | |
| 378-531, gnl|monDom2|scaffold_18 (7058989-7059130) | |
| 378-531, gnl|monDom2|scaffold_18 (7059132-7058992) | |
| 378-531, gnl|oryCun1|scaffold_129959 (9225-9083) | |
| 378-531, gnl|oryCun1|scaffold_129959 (9083-9236) | |
| 378-531, gnl|panTro1|chr11 (61880657-61880810) | |
| 378-531, gnl|panTro1|chr16 (18912260-18912117) | |
| 378-531, gnl|rheMac2|chr15 (86855197-86855350) | |
| 378-531, gnl|rheMac2|chr16 (73464622-73464762) | |
| 378-531, gnl|rn3|chr7 (118381193-118381341) | |
| 378-531, gnl|rn3|chr7 (118381341-118381191) | |
| 378-531, gnl|tetNig1|chr18 (9465906-9465756) | |
| 378-531, gnl|tetNig1|chr18 (9465757-9465926) | |
| 629-798, gnl|bosTau2|chr5 (69779251-69779432) | |
| 629-798, gnl|Hg17|chr22 (38098222-38098415) | |
| 629-798, gnl|Mm7|chr15 (80197757-80197917) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| ton (0.351) | |
| hyp (0.285673) | |
| cga (0.279096) | |
| fce (0.271592) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (0.351) | |
| hyp (0.285673) | |
| cga (0.279096) | |
| fce (0.271592) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) |