Non-Coding RNA Search

Ss1.1-Pig4-TMW8037K24.3

Sequence:


               
               CCCCCCAACTTTTCCCCCCATCCCCGCCCCCATGGCAGGGATGGAACCATCCCTACATGC
CACATGCAGTTTCTCCGGCCCCCTCCCGTTGCCATGGCAAAACAGGTACCTTTGGGGCAC
GGGGCATCACATGGGATGCTTGTGTTATCAACCACCTCACCTTCCTCCCCTCCTCACCCC
CCCCCCCCAGAATCACTTCCTAGGACACCCGAGCTGCTTGCCCAGGGTCCTGTTTCCCTG
CAGCCTCCAGAGAAGCACCCAGGGCTTTGTGACAGTCTCTACTCCCCTCCCCTTCTTGTT
AAGAATCATATTGTATAGTAGCTTTCAGACCATACAGTATTCATTGGGTTATTCCTATTA
TTATCAAGTAGCTGGAATTGTGAAGGTCGGAGTAGTTAGAGCTTTAGCTTTTATTCCTTA
TTTTTTTGTATTACTATCCATGTGTATAAATTATTGATCATGTTGCTGGCTTTTATAAAC
TCTAAGCGAAGGAGGAGCACCGCCTCTGCCTTTGCAAATGGTAATGAAGCACTGTTTTTA
AATAAAAGAGAGAAACACCAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCCCAACTTTTCCCCCCATCCCCGCCCCCATGGCAGGGATGGAACCATCCCTACATGC
CACATGCAGTTTCTCCGGCCCCCTCCCGTTGCCATGGCAAAACAGGTACCTTTGGGGCAC
GGGGCATCACATGGGATGCTTGTGTTATCAACCACCTCACCTTCCTCCCCTCCTCACCCC
CCCCCCCCAGAATCACTTCCTAGGACACCCGAGCTGCTTGCCCAGGGTCCTGTTTCCCTG
CAGCCTCCAGAGAAGCACCCAGGGCTTTGTGACAGTCTCTACTCCCCTCCCCTTCTTGTT
AAGAATCATATTGTATAGTAGCTTTCAGACCATACAGTATTCATTGGGTTATTCCTATTA
TTATCAAGTAGCTGGAATTGTGAAGGTCGGAGTAGTTAGAGCTTTAGCTTTTATTCCTTA
TTTTTTTGTATTACTATCCATGTGTATAAATTATTGATCATGTTGCTGGCTTTTATAAAC
TCTAAGCGAAGGAGGAGCACCGCCTCTGCCTTTGCAAATGGTAATGAAGCACTGTTTTTA
AATAAAAGAGAGAAACACCAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               21-137, - strand, RNAz p=0.993872
               

               
               175-292, - strand, RNAz p=0.852829

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               21-137, - strand, RNAz p=0.993872
               

               
               175-292, - strand, RNAz p=0.852829

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               32-117, - strand, RNAmicro p=0.999931
               

               
               216-302, - strand, RNAmicro p=0.974691

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               32-117, - strand, RNAmicro p=0.999931
               

               
               216-302, - strand, RNAmicro p=0.974691

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               21-560, gnl|bosTau2|chr5 (44155632-44155098)
               

               
               21-560, gnl|Hg17|chr22 (34459823-34459283)
               

               
               21-560, gnl|Mm7|chr15 (77162469-77161942)
               


               
               276-559, gnl|bosTau2|chr1 (55743598-55743323)
               

               
               276-559, gnl|Hg17|chr22 (34459558-34459284)
               

               
               276-559, gnl|Mm7|chr15 (77162235-77161943)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-560, gnl|bosTau2|chr5 (44155632-44155098)
               

               
               21-560, gnl|Hg17|chr22 (34459823-34459283)
               

               
               21-560, gnl|Mm7|chr15 (77162469-77161942)
               


               
               276-559, gnl|bosTau2|chr1 (55743598-55743323)
               

               
               276-559, gnl|Hg17|chr22 (34459558-34459284)
               

               
               276-559, gnl|Mm7|chr15 (77162235-77161943)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               sto (0.359648)
               

               
               ece (0.229305)
               

               
               cmu (0.186393)
               

               
               fco (0.157208)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               ecc (0.115035)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.359648)
               

               
               ece (0.229305)
               

               
               cmu (0.186393)
               

               
               fco (0.157208)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               ecc (0.115035)

	21-137, - strand, RNAz p=0.993872
	175-292, - strand, RNAz p=0.852829

	32-117, - strand, RNAmicro p=0.999931
	216-302, - strand, RNAmicro p=0.974691

	21-560, gnl\|bosTau2\|chr5 (44155632-44155098)
	21-560, gnl\|Hg17\|chr22 (34459823-34459283)
	21-560, gnl\|Mm7\|chr15 (77162469-77161942)

	276-559, gnl\|bosTau2\|chr1 (55743598-55743323)
	276-559, gnl\|Hg17\|chr22 (34459558-34459284)
	276-559, gnl\|Mm7\|chr15 (77162235-77161943)

	sto (0.359648)
	ece (0.229305)
	cmu (0.186393)
	fco (0.157208)
	csk (0.140746)
	hlv (0.139256)
	nmm (0.132802)
	ecc (0.115035)