Non-Coding RNA Search

Ss1.1-Pig4-TMW8037L01.3

Sequence:


               
               ATCCTCGGCTCCTACCTTTGACAAAGTCTCCTATTGAGAGTACCACCGAGCCACCAGCAG
TTCGAGCATCTGAAGAGCGTCTAAGCAACGGGGATATATATTTGCTGGAGAACGGGCTCA
ACCTCTTCCTCTGGGTGGGAGCCAGTGTCCAGCAGGGTGTTGTCCAGAGCCTCTTCGGTG
TCTCCTCCTTCAGTCAGATCACCAGTGGCCTGAGTGTTCTGCCTGTTCTGGATAATCTGC
TGTCCAAGAAGGTGCGAGGCCTCATTGATAATTTGAGGGCACAGAGATCACGGTACATGA
AGCTTATCGTGGTGAAACAGGAGGACAAGCTGGAGATGCTGTTCAAACACTTCCTGGTGG
AAGACAAGAGCTTGAGTGGGGGAGCATCCTATGTGGACTTTCTCTGTCATATGCACAAGG
AGATTCGGCAGCTACTGAGCTAGAGCAAGTGGGTAAACAGCATAGGGTCCAGGCCAGCTT
CCAGAAAGTACCCCAGGACAGCAGAGAAATTGGGACAGTTCCATACCTTATAAGTCATGT
AAGCTGACCTCAGTCTCTTTAGGGGGGAGGGGGAGATATAAGGAGACACCTTCTTTCTGG
GCTCAAGTATCCTACCACTCTGTCATGTCCTGCTGTTGGAAGGTGCCCCTATCCCCTCAC
TTTACCCTCCTTTTCCTGCTAATCCTGTCGTAATGAATGTAGTTTCTCAGTTCACTGTAT
ATGATTCGGTGTTGGGGGATTTGGAGCCACCCAGACCCAGGCAATATTATGTGTCCCTTT
GGACCAGCCTCCAAGAAGAGAAGGGCAGGTGGGAAGGAGTGGGGATCCCAGGGTTACTAC
AGGGGGAGGGGCTGCCAATTCAGCTCAGTGTCATCAACAACTTCCTATATTAGGGATAAA
CATACATACAGGTGCACAAGAGCTGGGGTGTAGACCATAGATGGTAGAGAAGAAAGTGGT
CTGTCTTCCTGGGCCTCAACAGCCAAGTCAGTTCCTGAAGGTGGTTGATTAGCTTTCTCT
CTCTGCTTCCGCTGCTCTTTCTCCTGCAATGATTGGTGATCACTTGGTGGATAGAGGCAC
ATTGTCAGAGGTGAATGAGCCTGGGAAGAGCGTTGCAAGGTATATTAAGACCTGGGAGAG
GTACCCACCTCCTTCCAGCTGGAGAGGCCCCAACACTGGATGGTTCTGTAGGGAGCCTTG
TCATCAACTTGCAATACCTCACAGAGCCAGCCCATATTCCACTCTGACCTCCTGCTGGAA
ACACTGCTCTCCAAGCTGGGGTTGTTGAGGGGAGAGGCAGAGGTGGCTAGTCTCTCCCGC
CAGGACACCACTCAGGCTTTGGCACTGACAGAGTGGCTGACAGTTATCTTCCAACCCGAC
CTGGCCGGGGCAGACCAAGGGCTAGGCTTGATGGTGGCCAGGCTTGCCTGCTCCCAGCCT
GGGATGCCCCTGCTCTGGACCTCTCATTTCTCTTCATTGGTTTATTTTTCAATGCATCTT
TAATTTGTAAAGAAATAAATTAAGATGTAACCAGTAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCCTCGGCTCCTACCTTTGACAAAGTCTCCTATTGAGAGTACCACCGAGCCACCAGCAG
TTCGAGCATCTGAAGAGCGTCTAAGCAACGGGGATATATATTTGCTGGAGAACGGGCTCA
ACCTCTTCCTCTGGGTGGGAGCCAGTGTCCAGCAGGGTGTTGTCCAGAGCCTCTTCGGTG
TCTCCTCCTTCAGTCAGATCACCAGTGGCCTGAGTGTTCTGCCTGTTCTGGATAATCTGC
TGTCCAAGAAGGTGCGAGGCCTCATTGATAATTTGAGGGCACAGAGATCACGGTACATGA
AGCTTATCGTGGTGAAACAGGAGGACAAGCTGGAGATGCTGTTCAAACACTTCCTGGTGG
AAGACAAGAGCTTGAGTGGGGGAGCATCCTATGTGGACTTTCTCTGTCATATGCACAAGG
AGATTCGGCAGCTACTGAGCTAGAGCAAGTGGGTAAACAGCATAGGGTCCAGGCCAGCTT
CCAGAAAGTACCCCAGGACAGCAGAGAAATTGGGACAGTTCCATACCTTATAAGTCATGT
AAGCTGACCTCAGTCTCTTTAGGGGGGAGGGGGAGATATAAGGAGACACCTTCTTTCTGG
GCTCAAGTATCCTACCACTCTGTCATGTCCTGCTGTTGGAAGGTGCCCCTATCCCCTCAC
TTTACCCTCCTTTTCCTGCTAATCCTGTCGTAATGAATGTAGTTTCTCAGTTCACTGTAT
ATGATTCGGTGTTGGGGGATTTGGAGCCACCCAGACCCAGGCAATATTATGTGTCCCTTT
GGACCAGCCTCCAAGAAGAGAAGGGCAGGTGGGAAGGAGTGGGGATCCCAGGGTTACTAC
AGGGGGAGGGGCTGCCAATTCAGCTCAGTGTCATCAACAACTTCCTATATTAGGGATAAA
CATACATACAGGTGCACAAGAGCTGGGGTGTAGACCATAGATGGTAGAGAAGAAAGTGGT
CTGTCTTCCTGGGCCTCAACAGCCAAGTCAGTTCCTGAAGGTGGTTGATTAGCTTTCTCT
CTCTGCTTCCGCTGCTCTTTCTCCTGCAATGATTGGTGATCACTTGGTGGATAGAGGCAC
ATTGTCAGAGGTGAATGAGCCTGGGAAGAGCGTTGCAAGGTATATTAAGACCTGGGAGAG
GTACCCACCTCCTTCCAGCTGGAGAGGCCCCAACACTGGATGGTTCTGTAGGGAGCCTTG
TCATCAACTTGCAATACCTCACAGAGCCAGCCCATATTCCACTCTGACCTCCTGCTGGAA
ACACTGCTCTCCAAGCTGGGGTTGTTGAGGGGAGAGGCAGAGGTGGCTAGTCTCTCCCGC
CAGGACACCACTCAGGCTTTGGCACTGACAGAGTGGCTGACAGTTATCTTCCAACCCGAC
CTGGCCGGGGCAGACCAAGGGCTAGGCTTGATGGTGGCCAGGCTTGCCTGCTCCCAGCCT
GGGATGCCCCTGCTCTGGACCTCTCATTTCTCTTCATTGGTTTATTTTTCAATGCATCTT
TAATTTGTAAAGAAATAAATTAAGATGTAACCAGTAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1387-1524, - strand, RNAz p=0.837618

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1387-1524, - strand, RNAz p=0.837618

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK126671, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK126671, -

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-550, gnl|bosTau2|chr10 (61371444-61371972)
               

               
               1-550, gnl|Hg17|chr10 (75199760-75200959)
               

               
               1-550, gnl|Mm7|chr14 (18349063-18350456)
               


               
               578-1015, gnl|bosTau2|chr10 (61371982-61372409)
               

               
               578-1015, gnl|Hg17|chr10 (75200986-75201411)
               

               
               578-1015, gnl|Mm7|chr14 (18350488-18350919)
               


               
               1039-1524, gnl|bosTau2|chr10 (61372408-61372900)
               

               
               1039-1524, gnl|Hg17|chr10 (75201410-75201915)
               

               
               1039-1524, gnl|Mm7|chr14 (18350918-18351394)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-550, gnl|bosTau2|chr10 (61371444-61371972)
               

               
               1-550, gnl|Hg17|chr10 (75199760-75200959)
               

               
               1-550, gnl|Mm7|chr14 (18349063-18350456)
               


               
               578-1015, gnl|bosTau2|chr10 (61371982-61372409)
               

               
               578-1015, gnl|Hg17|chr10 (75200986-75201411)
               

               
               578-1015, gnl|Mm7|chr14 (18350488-18350919)
               


               
               1039-1524, gnl|bosTau2|chr10 (61372408-61372900)
               

               
               1039-1524, gnl|Hg17|chr10 (75201410-75201915)
               

               
               1039-1524, gnl|Mm7|chr14 (18350918-18351394)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               fhi (0.339155)
               

               
               jej (0.296765)
               

               
               jca (0.22792)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.339155)
               

               
               jej (0.296765)
               

               
               jca (0.22792)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

	1-550, gnl\|bosTau2\|chr10 (61371444-61371972)
	1-550, gnl\|Hg17\|chr10 (75199760-75200959)
	1-550, gnl\|Mm7\|chr14 (18349063-18350456)

	578-1015, gnl\|bosTau2\|chr10 (61371982-61372409)
	578-1015, gnl\|Hg17\|chr10 (75200986-75201411)
	578-1015, gnl\|Mm7\|chr14 (18350488-18350919)

	1039-1524, gnl\|bosTau2\|chr10 (61372408-61372900)
	1039-1524, gnl\|Hg17\|chr10 (75201410-75201915)
	1039-1524, gnl\|Mm7\|chr14 (18350918-18351394)

	fhi (0.339155)
	jej (0.296765)
	jca (0.22792)
	ton (0.1755)
	duo (0.172801)
	nje (0.16592)
	cag (0.151194)
	hyp (0.142837)
	pla (0.133672)
	nmm (0.132802)
	pgl (0.118483)
	cty (0.10408)