Non-Coding RNA Search

Ss1.1-Pig4-TMW8037L07.5

Sequence:


               
               TGTCTCCTGGTCATCCTTCCACAGCTGACCCCAGGTCTGCAGACCGGAGCGAGGCTTACC
CCCCGCCCCAGCATGCAAGAAGGTGCCACTGCCCAGGTCCCTAAGAGGGCAGAGTTCCCC
AAGCTGCCCAGCGCCTTGCAGGACCTTACTCTACAGGTGGTGGGCACAGTGGAAGTGGCT
CCTTTTCTCTGAACACCCCCCACCATTTTCTCTGAACAGATGCCATTTTCAGCCCTATGA
GCTTCAGCTCCAAATGACCCCTTGAATCTGATGACCCCTACCCCCCCCCGGCCCCCCTAC
CTTTAAGGACAGAGAAGGAAGGACTGGAGTGAGGTCCCCTCTTCTCTAAGGCCTGGAACC
ACAGCCCCTGGCCCCGGGACCCTGTGGGGAAGACGGGGTCCTGAGAGGCCTGGAGGAAAC
CAGCGCATGCCCACCTACCTTGCCAATGCACACCTGCTGGGCTGGCTGGGCCTTGTCAGG
CCAGGCATGTGGGCTCACCCAGAGCGAGGCACGAGACCCCCATGCAGTGGGTACCTGCCA
GGCCCAGGGACTGCAGTTGAGCTCCCCAGGGTCCAGGGTGGCCTACCGAGGCCTCTGGCC
CCGTGTCACCTCTCTCCAGGTGTCTGATGCCTTTCAGTCCTGTCTTTATCTCTCCCTGGG
CTGAGAAAAGCAGTGTTTTCCATTAGGGCTCTTAATTGCAAGTGACAGAAACCCTATCCA
GACTGACTTAATAATAAAAAGAAAGCTTATTGACGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTCTCCTGGTCATCCTTCCACAGCTGACCCCAGGTCTGCAGACCGGAGCGAGGCTTACC
CCCCGCCCCAGCATGCAAGAAGGTGCCACTGCCCAGGTCCCTAAGAGGGCAGAGTTCCCC
AAGCTGCCCAGCGCCTTGCAGGACCTTACTCTACAGGTGGTGGGCACAGTGGAAGTGGCT
CCTTTTCTCTGAACACCCCCCACCATTTTCTCTGAACAGATGCCATTTTCAGCCCTATGA
GCTTCAGCTCCAAATGACCCCTTGAATCTGATGACCCCTACCCCCCCCCGGCCCCCCTAC
CTTTAAGGACAGAGAAGGAAGGACTGGAGTGAGGTCCCCTCTTCTCTAAGGCCTGGAACC
ACAGCCCCTGGCCCCGGGACCCTGTGGGGAAGACGGGGTCCTGAGAGGCCTGGAGGAAAC
CAGCGCATGCCCACCTACCTTGCCAATGCACACCTGCTGGGCTGGCTGGGCCTTGTCAGG
CCAGGCATGTGGGCTCACCCAGAGCGAGGCACGAGACCCCCATGCAGTGGGTACCTGCCA
GGCCCAGGGACTGCAGTTGAGCTCCCCAGGGTCCAGGGTGGCCTACCGAGGCCTCTGGCC
CCGTGTCACCTCTCTCCAGGTGTCTGATGCCTTTCAGTCCTGTCTTTATCTCTCCCTGGG
CTGAGAAAAGCAGTGTTTTCCATTAGGGCTCTTAATTGCAAGTGACAGAAACCCTATCCA
GACTGACTTAATAATAAAAAGAAAGCTTATTGACGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               447-603, - strand, RNAz p=0.986212

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               447-603, - strand, RNAz p=0.986212

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               2-154, gnl|bosTau2|chr18 (30212538-30212387)
               


               
               299-754, gnl|bosTau2|chr18 (30212172-30211718)
               

               
               299-754, gnl|Hg17|chr19 (34857743-34858205)
               

               
               299-754, gnl|Mm7|chr7 (35115630-35115232)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-154, gnl|bosTau2|chr18 (30212538-30212387)
               


               
               299-754, gnl|bosTau2|chr18 (30212172-30211718)
               

               
               299-754, gnl|Hg17|chr19 (34857743-34858205)
               

               
               299-754, gnl|Mm7|chr7 (35115630-35115232)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               mcp (0.341297)
               

               
               mas (0.210305)
               

               
               nep (0.183925)
               

               
               duo (0.172801)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.341297)
               

               
               mas (0.210305)
               

               
               nep (0.183925)
               

               
               duo (0.172801)

	2-154, gnl\|bosTau2\|chr18 (30212538-30212387)

	299-754, gnl\|bosTau2\|chr18 (30212172-30211718)
	299-754, gnl\|Hg17\|chr19 (34857743-34858205)
	299-754, gnl\|Mm7\|chr7 (35115630-35115232)