Ss1.1-Pig4-TMW8037L11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAGCGGCGAGGATAGGGCGGCGAGGGCCGGGGGCCCGTGGGAGGAGTGCTTCGAAGCGG CGGTGCAGCTCGCGCTGCGGGCAGGACAGATCATCAGAAAAGCCCTTTCTGAGGAAAAAC GTGTGTCAACGAAAACGTCAGCCGTGGACCTGGTGACAGAAACGGACCAGGCAGTGGAGG CCTTGATCCTGTCCGAGCTGCAGGAGCGCTTCCCCTCGCACAGGTTCATCGCAGAAGAGG CTGCGGCCGCCGGGGCTAAGTGTGTGCTCACCCCCAGCCCCACGTGGATCGTCGACCCCA TTGACGGCACCTGCAACTTCGTGCACAGATTCCCGACCGTGGCAGTGAGCATCGGGTTTG CTGTGAACCAGGAGCTGGAGTTCGGGGTGATCTACCACTGCACAGAGGAGCGGCTGTACA CGGGCCAGAGGGGCCGCGGTGCCTTCTGCAATGGCCAGCAGCTGCAGGTTTCCAGGGAGA CAGACCTCTCCAAGGCCCTGGTCTTGACGGAAATCGGTCCCAGGCGCGACCCCGCGACTC TGAAGCTGTTCCTGAGCAACATGGAGAGGCTGCTTCGCACTGGGGCGCACGGCGTCCGAG TCATCGGCAGCTCCACCTTGGCACTCTGCCACCTGGCCTCAGGCGCTGCAGATGCCTACT ACCAGTTTGGCCTGCACTGCTGGGACCTGGCCGCTGCCACTGTGATCATCCGAGAAGCAG GCGGCATCGTGATGGACACGTCAGGCGGCCCCCTCGACCTCATGGCTTGCAGAGTGGTTG CTGCGGGTACCCGGGAGATGGCAACCCTCGTTGCTCAGGCCCTACAAACGATTAACTATG GGAGGGACGACGAGAGGTGAGGGGAGCAGACGACAAGGACACGCCCCAGGAGCTGGTGAG GTCCCCAAGGTCAAGTGTCTCTGTATGAGGCCACATCTCAGCCTCAGCGGGAACCTCTCT GTAATCTCAGTAGCCTTGTTCAGGTCAGTCCAGCCCTTACTGGGCCGAGACCCAGCTCTC ATAGGACGCGTGTATTGATGATGTAAATCTCAGGTAATAAGGCTTTAAAACTGCTGTTCA GGCAGACTTGTTCTCAGCGACAGCCCCAGGGCACTTCAGAATGCAATAAATCAAACAATG ATGCCCGGAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAGCGGCGAGGATAGGGCGGCGAGGGCCGGGGGCCCGTGGGAGGAGTGCTTCGAAGCGG CGGTGCAGCTCGCGCTGCGGGCAGGACAGATCATCAGAAAAGCCCTTTCTGAGGAAAAAC GTGTGTCAACGAAAACGTCAGCCGTGGACCTGGTGACAGAAACGGACCAGGCAGTGGAGG CCTTGATCCTGTCCGAGCTGCAGGAGCGCTTCCCCTCGCACAGGTTCATCGCAGAAGAGG CTGCGGCCGCCGGGGCTAAGTGTGTGCTCACCCCCAGCCCCACGTGGATCGTCGACCCCA TTGACGGCACCTGCAACTTCGTGCACAGATTCCCGACCGTGGCAGTGAGCATCGGGTTTG CTGTGAACCAGGAGCTGGAGTTCGGGGTGATCTACCACTGCACAGAGGAGCGGCTGTACA CGGGCCAGAGGGGCCGCGGTGCCTTCTGCAATGGCCAGCAGCTGCAGGTTTCCAGGGAGA CAGACCTCTCCAAGGCCCTGGTCTTGACGGAAATCGGTCCCAGGCGCGACCCCGCGACTC TGAAGCTGTTCCTGAGCAACATGGAGAGGCTGCTTCGCACTGGGGCGCACGGCGTCCGAG TCATCGGCAGCTCCACCTTGGCACTCTGCCACCTGGCCTCAGGCGCTGCAGATGCCTACT ACCAGTTTGGCCTGCACTGCTGGGACCTGGCCGCTGCCACTGTGATCATCCGAGAAGCAG GCGGCATCGTGATGGACACGTCAGGCGGCCCCCTCGACCTCATGGCTTGCAGAGTGGTTG CTGCGGGTACCCGGGAGATGGCAACCCTCGTTGCTCAGGCCCTACAAACGATTAACTATG GGAGGGACGACGAGAGGTGAGGGGAGCAGACGACAAGGACACGCCCCAGGAGCTGGTGAG GTCCCCAAGGTCAAGTGTCTCTGTATGAGGCCACATCTCAGCCTCAGCGGGAACCTCTCT GTAATCTCAGTAGCCTTGTTCAGGTCAGTCCAGCCCTTACTGGGCCGAGACCCAGCTCTC ATAGGACGCGTGTATTGATGATGTAAATCTCAGGTAATAAGGCTTTAAAACTGCTGTTCA GGCAGACTTGTTCTCAGCGACAGCCCCAGGGCACTTCAGAATGCAATAAATCAAACAATG ATGCCCGGAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 87-225, gnl|bosTau2|chr24 (31691948-31692086) | |
| 87-225, gnl|Hg17|chr18 (11989050-11989188) | |
| 87-225, gnl|Mm7|chr18 (67694468-67694606) | |
| 373-483, gnl|bosTau2|chr24 (29262440-29262330) | |
| 373-483, gnl|canFam2|chr7 (80676074-80676226) | |
| 373-483, gnl|danRer3|chrNA (64371725-64371862) | |
| 373-483, gnl|dasNov1|scaffold_128866 (4434-4585) | |
| 373-483, gnl|echTel1|scaffold_33258 (487-638) | |
| 373-483, gnl|galGal2|chr2 (96336226-96336380) | |
| 373-483, gnl|hg17|chr18 (12004230-12004382) | |
| 373-483, gnl|Hg17|chr18 (12004262-12004372) | |
| 373-483, gnl|mm7|chr18 (67702916-67703060) | |
| 373-483, gnl|Mm7|chr18 (67702940-67703050) | |
| 373-483, gnl|monDom2|scaffold_21 (19795153-19794999) | |
| 373-483, gnl|oryCun1|scaffold_199080 (59259-59109) | |
| 373-483, gnl|panTro1|chr17 (1829682-1829834) | |
| 373-483, gnl|rheMac2|chr18 (3887681-3887833) | |
| 373-483, gnl|rn3|chr18 (63905205-63905349) | |
| 373-483, gnl|tetNig1|chr6 (5365231-5365095) | |
| 594-745, gnl|bosTau2|chr24 (29257239-29257088) | |
| 594-745, gnl|canFam2|chr7 (80689794-80689964) | |
| 594-745, gnl|danRer3|chrNA (64374040-64374201) | |
| 594-745, gnl|echTel1|scaffold_112455 (392-221) | |
| 594-745, gnl|galGal2|chr2 (96340005-96340176) | |
| 594-745, gnl|hg17|chr18 (12018827-12018998) | |
| 594-745, gnl|Hg17|chr18 (12018842-12018993) | |
| 594-745, gnl|loxAfr1|scaffold_3789 (95127-94956) | |
| 594-745, gnl|mm7|chr18 (67709166-67709334) | |
| 594-745, gnl|Mm7|chr18 (67709178-67709329) | |
| 594-745, gnl|monDom2|scaffold_21 (19777409-19777250) | |
| 594-745, gnl|oryCun1|scaffold_199080 (43948-43780) | |
| 594-745, gnl|panTro1|chr17 (1844268-1844439) | |
| 594-745, gnl|rheMac2|chr18 (3898905-3899076) | |
| 594-745, gnl|rn3|chr18 (63911549-63911720) | |
| 594-745, gnl|xenTro1|scaffold_202 (1697635-1697477) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 87-225, gnl|bosTau2|chr24 (31691948-31692086) | |
| 87-225, gnl|Hg17|chr18 (11989050-11989188) | |
| 87-225, gnl|Mm7|chr18 (67694468-67694606) | |
| 373-483, gnl|bosTau2|chr24 (29262440-29262330) | |
| 373-483, gnl|canFam2|chr7 (80676074-80676226) | |
| 373-483, gnl|danRer3|chrNA (64371725-64371862) | |
| 373-483, gnl|dasNov1|scaffold_128866 (4434-4585) | |
| 373-483, gnl|echTel1|scaffold_33258 (487-638) | |
| 373-483, gnl|galGal2|chr2 (96336226-96336380) | |
| 373-483, gnl|hg17|chr18 (12004230-12004382) | |
| 373-483, gnl|Hg17|chr18 (12004262-12004372) | |
| 373-483, gnl|mm7|chr18 (67702916-67703060) | |
| 373-483, gnl|Mm7|chr18 (67702940-67703050) | |
| 373-483, gnl|monDom2|scaffold_21 (19795153-19794999) | |
| 373-483, gnl|oryCun1|scaffold_199080 (59259-59109) | |
| 373-483, gnl|panTro1|chr17 (1829682-1829834) | |
| 373-483, gnl|rheMac2|chr18 (3887681-3887833) | |
| 373-483, gnl|rn3|chr18 (63905205-63905349) | |
| 373-483, gnl|tetNig1|chr6 (5365231-5365095) | |
| 594-745, gnl|bosTau2|chr24 (29257239-29257088) | |
| 594-745, gnl|canFam2|chr7 (80689794-80689964) | |
| 594-745, gnl|danRer3|chrNA (64374040-64374201) | |
| 594-745, gnl|echTel1|scaffold_112455 (392-221) | |
| 594-745, gnl|galGal2|chr2 (96340005-96340176) | |
| 594-745, gnl|hg17|chr18 (12018827-12018998) | |
| 594-745, gnl|Hg17|chr18 (12018842-12018993) | |
| 594-745, gnl|loxAfr1|scaffold_3789 (95127-94956) | |
| 594-745, gnl|mm7|chr18 (67709166-67709334) | |
| 594-745, gnl|Mm7|chr18 (67709178-67709329) | |
| 594-745, gnl|monDom2|scaffold_21 (19777409-19777250) | |
| 594-745, gnl|oryCun1|scaffold_199080 (43948-43780) | |
| 594-745, gnl|panTro1|chr17 (1844268-1844439) | |
| 594-745, gnl|rheMac2|chr18 (3898905-3899076) | |
| 594-745, gnl|rn3|chr18 (63911549-63911720) | |
| 594-745, gnl|xenTro1|scaffold_202 (1697635-1697477) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| mas (0.210305) | |
| fli (0.202881) | |
| col (0.195008) | |
| ill (0.175593) | |
| ton (0.1755) | |
| cki (0.165235) | |
| nco (0.161734) | |
| pty (0.142714) | |
| cst (0.140036) | |
| nmm (0.132802) | |
| bla (0.124347) | |
| eep (0.122564) | |
| cly (0.120642) | |
| jej (0.0989218) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.210305) | |
| fli (0.202881) | |
| col (0.195008) | |
| ill (0.175593) | |
| ton (0.1755) | |
| cki (0.165235) | |
| nco (0.161734) | |
| pty (0.142714) | |
| cst (0.140036) | |
| nmm (0.132802) | |
| bla (0.124347) | |
| eep (0.122564) | |
| cly (0.120642) | |
| jej (0.0989218) |