Non-Coding RNA Search

Ss1.1-Pig4-TMW8037L23.5

Sequence:


               
               CCAGATCACGTGGATCGGCGCCCTTGCGGCTTTTCCGGCACGGGTTATGGGCGGCCCGGT
GCAGGGCGGTGGGCCCCGGGCCCTGGACCTGCTGCGAGCCCTTCCCCGTGTGAGTCTGGC
CAACCTGAAGCCGAACCCGGGCTCCAGGAAACCGGAAAGACGACCAAGAGGTCGGAGAAG
AGGCAGAAAATGTGGCAGAGGCCACAAGGGAGAACGGCAGAGAGGAACCCGGCCCCGATT
GGGCTTTGAGGGAGGCCAGACTCCATTCTACCTTCGAATCCCAAAATATGGCTTTAATGA
AGGACATAGCTTCCGACACCAGTATCAGCCTTTGAGTCTCAATAGACTGCAGTATCTTAT
TGACTTGGGTCGAGTTGATCCTACACAACCTATTGACTTAACCCAGCTTGTCAATGGCAG
GGGTGTGACCATCCAGCCATCTAAGAGGGATTATGGTGTCCAGCTGGTAGAGGAGGGTGC
CGACACCTTTAAGGCGAAAGTCAATATTGAAGTACAGATGGCTTCAGAGCTGGCCATCGC
TGCAATCGAGAAGAATGGGGGTGTTGTCACGACGGCCTTCTACGACCCGAGAAGCTTGGA
AATTCTGTGCAAACCTGTTCCGTTCTTTCTCCGGGGACAACCCATCCCGAAGCGCATGCT
CCCCCCCGAGGCGCTGGTGCCATACTACACTGATGCAAAGAACCGCGGGTACCTGGCGGA
TCCTGCCCGATTTCCTGAAGCAAGGCTTGAGCTCGCCAGGAAGTACGGTTATGTTTTGCC
TGATATCACTAAAGACGAACTCTTCAAAATGCTCAGTACTCGAAAGGATCCAAGGCAGAT
TTTCTTTGGTCTTGCTCCCGGATGGGTGGTGAATATGGCAGATAAGAAAATCCTAAAACC
TACAGATGAGAATCTCCTCAAGTACTACAGCTCGTGAGCTCCTTCCAAGAGAGATTGTCA
GAGCACTGGGGAGTGGCCGGAACACACGTCTTTCCCGTGGCATGTGCTTAACTGTAATTC
TGCAGAGGTTGGTGTGTTTGGTATAATCCTCTCTCTCTTTTTTTTTTTAACCTAAATTAA
AATAAATGTACGGTACTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGATCACGTGGATCGGCGCCCTTGCGGCTTTTCCGGCACGGGTTATGGGCGGCCCGGT
GCAGGGCGGTGGGCCCCGGGCCCTGGACCTGCTGCGAGCCCTTCCCCGTGTGAGTCTGGC
CAACCTGAAGCCGAACCCGGGCTCCAGGAAACCGGAAAGACGACCAAGAGGTCGGAGAAG
AGGCAGAAAATGTGGCAGAGGCCACAAGGGAGAACGGCAGAGAGGAACCCGGCCCCGATT
GGGCTTTGAGGGAGGCCAGACTCCATTCTACCTTCGAATCCCAAAATATGGCTTTAATGA
AGGACATAGCTTCCGACACCAGTATCAGCCTTTGAGTCTCAATAGACTGCAGTATCTTAT
TGACTTGGGTCGAGTTGATCCTACACAACCTATTGACTTAACCCAGCTTGTCAATGGCAG
GGGTGTGACCATCCAGCCATCTAAGAGGGATTATGGTGTCCAGCTGGTAGAGGAGGGTGC
CGACACCTTTAAGGCGAAAGTCAATATTGAAGTACAGATGGCTTCAGAGCTGGCCATCGC
TGCAATCGAGAAGAATGGGGGTGTTGTCACGACGGCCTTCTACGACCCGAGAAGCTTGGA
AATTCTGTGCAAACCTGTTCCGTTCTTTCTCCGGGGACAACCCATCCCGAAGCGCATGCT
CCCCCCCGAGGCGCTGGTGCCATACTACACTGATGCAAAGAACCGCGGGTACCTGGCGGA
TCCTGCCCGATTTCCTGAAGCAAGGCTTGAGCTCGCCAGGAAGTACGGTTATGTTTTGCC
TGATATCACTAAAGACGAACTCTTCAAAATGCTCAGTACTCGAAAGGATCCAAGGCAGAT
TTTCTTTGGTCTTGCTCCCGGATGGGTGGTGAATATGGCAGATAAGAAAATCCTAAAACC
TACAGATGAGAATCTCCTCAAGTACTACAGCTCGTGAGCTCCTTCCAAGAGAGATTGTCA
GAGCACTGGGGAGTGGCCGGAACACACGTCTTTCCCGTGGCATGTGCTTAACTGTAATTC
TGCAGAGGTTGGTGTGTTTGGTATAATCCTCTCTCTCTTTTTTTTTTTAACCTAAATTAA
AATAAATGTACGGTACTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|14028378|dbj|BAB54947.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14028378|dbj|BAB54947.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               17-1082, gnl|bosTau2|chr14 (12671875-12670807)
               

               
               17-1082, gnl|Hg17|chr8 (55210365-55222985)
               

               
               17-1082, gnl|Mm7|chr18 (37810442-37811326)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-1082, gnl|bosTau2|chr14 (12671875-12670807)
               

               
               17-1082, gnl|Hg17|chr8 (55210365-55222985)
               

               
               17-1082, gnl|Mm7|chr18 (37810442-37811326)

Expressed library(ies): 33 entry(ies)

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Expressed library(ies): 33 entry(ies)

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               tbr (0.616713)
               

               
               tes (0.415628)
               

               
               ldo (0.38801)
               

               
               thg (0.380373)
               

               
               lin (0.291206)
               

               
               cst (0.280073)
               

               
               hlv (0.278513)
               

               
               ste (0.270416)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 33 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.616713)
               

               
               tes (0.415628)
               

               
               ldo (0.38801)
               

               
               thg (0.380373)
               

               
               lin (0.291206)
               

               
               cst (0.280073)
               

               
               hlv (0.278513)
               

               
               ste (0.270416)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	17-1082, gnl\|bosTau2\|chr14 (12671875-12670807)
	17-1082, gnl\|Hg17\|chr8 (55210365-55222985)
	17-1082, gnl\|Mm7\|chr18 (37810442-37811326)

	tbr (0.616713)
	tes (0.415628)
	ldo (0.38801)
	thg (0.380373)
	lin (0.291206)
	cst (0.280073)
	hlv (0.278513)
	ste (0.270416)
	mgp (0.230681)
	spc (0.226732)
	hea (0.204499)
	fcc (0.197785)
	nlu (0.191681)
	ton (0.1755)
	mcp (0.170648)
	eye (0.170503)
	nje (0.16592)
	cje (0.165235)
	nco (0.161734)
	mga (0.160205)
	bfe (0.149858)
	fat (0.147427)
	che (0.136314)
	ssp (0.13552)
	ute (0.132784)
	cov (0.132153)
	ova (0.129132)
	ret (0.128733)
	sug (0.127291)
	ese (0.126502)
	bla (0.124347)
	nbm (0.0993246)
	jej (0.0989218)