Non-Coding RNA Search

Ss1.1-Pig4-TMW8037M02.3

Sequence:


               
               CGTCTGAGGTGGCGGCCGGCTCCGTCCTCGCCAGCTCCGTGTTCCCTGTGCTCCCGCTTC
CCTTTCCCCTCGGGCCCGGGCCGGCCTGCGTGCTCCCCTGCCTCCTCAGGGTGGCCGCCT
AGCCCCCGACCCTAGCGGGCTGCGCCTTCGGCTTTCTCTGGGCTTCCGTCCGCCCCGGCC
CCGCCATGAATGAGGAGTACGACGTGATCGTGCTGGGCACCGGCCTGACGGAATGCATTC
TGTCGGGTATTATGTCAGTGAATGGGAAGAAGGTTCTTCACATGGATAGAAACCCCTATT
ACGGAGGAGAAAGTGCCTCGATTACACCCCTGGAAGACTTGTACAAAAGATTTAATATAC
CTGGAGCCCCACCAGCCTCAATGGGGAGAGGAAGAGACTGGAACGTTGACCTCATCCCCA
AGTTCCTCATGGCTAATGGTCAGCTGGTTAAGATGCTGCTTTTTACCGAGGTCACTCGCT
ACCTGGATTTCAAGGTGACCGAAGGGAGCTTCGTCTACAAGGGAGGGAAGATCTACAAGG
TTCCTTCCACTGAGGCAGAGGCCCTGGCGTCGAGCTTAATGGGGCTGTTTGAAAAACGTC
GCTTCAGAAAATTCCTGGTGTATGTTGCCAACTTTGATGAGAACGATCCCAGGACGTTTG
AGGGGGTTGACCCTAAGAAGACGGCGATGCGAGAGGTGTATAAGAAATTTGACTTGGGCC
AAGATGTTATTGATTTTACTGGGCATGCCCTGGCCCTTTACAGAACTGATGACTATTTAG
ATCAACCATGTTGTGAAACCATTAATAGGATTAAGCTTTACAGTGAGTCTTTGGCAAGAT
ATGGCAAAAGCCCATACCTTTATCCGCTCTACGGCCTTGGAGAACTGCCTCAAGGATTTG
CAAGGCTAAGTGCTATTTACGGAGGTACCTACATGCTGAATAAACCCATCGAAGAAATCA
TTGTGCAGAATGGAAAAGTGATTGGTGTAAAATCTGAAGGAGAGATCGCGCGCTGCAAGC
AGCTCATCTGCGACCCCAGCTACGTGAAAGACCGCGTGGAGAAGGTGGGCCAGGTGATCC
GTGTCATCTGCATCCTGAGCCACCCCATCAAGAACACCAGTGACGCCAACTCCTGCCAGA
TCATCATTCCCCAGAACCAAGTCAACCGCAAGTCCGACATCTACGTCTGCATGATCTCCT
CGGCGCACAACGTGGCTGCGCAGGGCAAGTACATCGCCATCGCCAGCACCACCGTGGAGA
CCAAGGAACCCGAGAAGGAGATCAGACCGGCCCTGGAGCTCCTGGAGCCGATTGAGCAGA
AATTCGTCAGCATCAGCGACCTCCTTGTCCCGAAAGATCTGGGAACAGACAGCCAGATCT
TCATATCCCGCACGTACGACGCCACCACTCACTTCGAGACCACCTGTGACGACATCAAGG
ACATCTATAAGAGGATGACGGGGTCCGAGTTTGACTTCGAGGAAATGAAGCGCAAGAAAA
ACGACATCTACGGGGAGGACTAAGGGCCGTGCCCGGCGCTCAGTTAGGACGCCTTCCGGC
CTGGCGGGGACGCGCAGCGGAGGACGTCACTCTCGCGAGGCTGCTCTCGTAACCAGGCCG
GGCGGCGGCAGGGCCCTGTGCCCGTCAAGACCCTCCCCTCCTAATATCATGTATTAACTT
GTTCCACCGCGTGGCTCTTCAGAATTGGCGGGTTCCCACATCCCATCCATGTAACCAATA
CTGGCTTGTTTTTTCTAGTGAAGGATCAGTTTTAACACATTGTGATACCGACACAGAACT
CGATACAGCACTCGTATCTTTTAATCAGCCTGGCCTTTGCCCTTGCGAGCTGCTGCTGCT
GCTCGCGAGCTGGGCGCTGGGGCTGTGTGCAGTTTGCGACAGTTGGCGTGCGCCTGTCCT
CTAGACATTCAGGAGACTCGGAATCCGACATTCCCTCAGCCGGGACAGCATCCCCGACCC
CTGCTCACCCTGTACCTTTACGGCAGGCGTGACGACCCTGCCCGGGCAGCACAGCTACGC
GTTTGGTTCACGTGGGCCTCCACTTCTAACCCAGCTCCAGACTTGGAGAGTCGTTTTGGC
GGAAGCCGAGTGCGGTGTTTTAACCTAATGAAATGGATGCGAGCAGAGGGAGGAAACCTC
TCCTGAAGCAGGTAAATACAGAAGCTGCGTTTGTGCCCCAGGTGTGGCTTCCTCCGCGGA
CCAAGCCGCAGGGTGGCGTGGAGGTGACAGAGCCCTGCGTCCGTGGTGTCGGTCTCAGAA
AGGCTCCCGATGATTTCTGTCCTGCAAAATAAAGCCAAACTCTGGAAACCAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTCTGAGGTGGCGGCCGGCTCCGTCCTCGCCAGCTCCGTGTTCCCTGTGCTCCCGCTTC
CCTTTCCCCTCGGGCCCGGGCCGGCCTGCGTGCTCCCCTGCCTCCTCAGGGTGGCCGCCT
AGCCCCCGACCCTAGCGGGCTGCGCCTTCGGCTTTCTCTGGGCTTCCGTCCGCCCCGGCC
CCGCCATGAATGAGGAGTACGACGTGATCGTGCTGGGCACCGGCCTGACGGAATGCATTC
TGTCGGGTATTATGTCAGTGAATGGGAAGAAGGTTCTTCACATGGATAGAAACCCCTATT
ACGGAGGAGAAAGTGCCTCGATTACACCCCTGGAAGACTTGTACAAAAGATTTAATATAC
CTGGAGCCCCACCAGCCTCAATGGGGAGAGGAAGAGACTGGAACGTTGACCTCATCCCCA
AGTTCCTCATGGCTAATGGTCAGCTGGTTAAGATGCTGCTTTTTACCGAGGTCACTCGCT
ACCTGGATTTCAAGGTGACCGAAGGGAGCTTCGTCTACAAGGGAGGGAAGATCTACAAGG
TTCCTTCCACTGAGGCAGAGGCCCTGGCGTCGAGCTTAATGGGGCTGTTTGAAAAACGTC
GCTTCAGAAAATTCCTGGTGTATGTTGCCAACTTTGATGAGAACGATCCCAGGACGTTTG
AGGGGGTTGACCCTAAGAAGACGGCGATGCGAGAGGTGTATAAGAAATTTGACTTGGGCC
AAGATGTTATTGATTTTACTGGGCATGCCCTGGCCCTTTACAGAACTGATGACTATTTAG
ATCAACCATGTTGTGAAACCATTAATAGGATTAAGCTTTACAGTGAGTCTTTGGCAAGAT
ATGGCAAAAGCCCATACCTTTATCCGCTCTACGGCCTTGGAGAACTGCCTCAAGGATTTG
CAAGGCTAAGTGCTATTTACGGAGGTACCTACATGCTGAATAAACCCATCGAAGAAATCA
TTGTGCAGAATGGAAAAGTGATTGGTGTAAAATCTGAAGGAGAGATCGCGCGCTGCAAGC
AGCTCATCTGCGACCCCAGCTACGTGAAAGACCGCGTGGAGAAGGTGGGCCAGGTGATCC
GTGTCATCTGCATCCTGAGCCACCCCATCAAGAACACCAGTGACGCCAACTCCTGCCAGA
TCATCATTCCCCAGAACCAAGTCAACCGCAAGTCCGACATCTACGTCTGCATGATCTCCT
CGGCGCACAACGTGGCTGCGCAGGGCAAGTACATCGCCATCGCCAGCACCACCGTGGAGA
CCAAGGAACCCGAGAAGGAGATCAGACCGGCCCTGGAGCTCCTGGAGCCGATTGAGCAGA
AATTCGTCAGCATCAGCGACCTCCTTGTCCCGAAAGATCTGGGAACAGACAGCCAGATCT
TCATATCCCGCACGTACGACGCCACCACTCACTTCGAGACCACCTGTGACGACATCAAGG
ACATCTATAAGAGGATGACGGGGTCCGAGTTTGACTTCGAGGAAATGAAGCGCAAGAAAA
ACGACATCTACGGGGAGGACTAAGGGCCGTGCCCGGCGCTCAGTTAGGACGCCTTCCGGC
CTGGCGGGGACGCGCAGCGGAGGACGTCACTCTCGCGAGGCTGCTCTCGTAACCAGGCCG
GGCGGCGGCAGGGCCCTGTGCCCGTCAAGACCCTCCCCTCCTAATATCATGTATTAACTT
GTTCCACCGCGTGGCTCTTCAGAATTGGCGGGTTCCCACATCCCATCCATGTAACCAATA
CTGGCTTGTTTTTTCTAGTGAAGGATCAGTTTTAACACATTGTGATACCGACACAGAACT
CGATACAGCACTCGTATCTTTTAATCAGCCTGGCCTTTGCCCTTGCGAGCTGCTGCTGCT
GCTCGCGAGCTGGGCGCTGGGGCTGTGTGCAGTTTGCGACAGTTGGCGTGCGCCTGTCCT
CTAGACATTCAGGAGACTCGGAATCCGACATTCCCTCAGCCGGGACAGCATCCCCGACCC
CTGCTCACCCTGTACCTTTACGGCAGGCGTGACGACCCTGCCCGGGCAGCACAGCTACGC
GTTTGGTTCACGTGGGCCTCCACTTCTAACCCAGCTCCAGACTTGGAGAGTCGTTTTGGC
GGAAGCCGAGTGCGGTGTTTTAACCTAATGAAATGGATGCGAGCAGAGGGAGGAAACCTC
TCCTGAAGCAGGTAAATACAGAAGCTGCGTTTGTGCCCCAGGTGTGGCTTCCTCCGCGGA
CCAAGCCGCAGGGTGGCGTGGAGGTGACAGAGCCCTGCGTCCGTGGTGTCGGTCTCAGAA
AGGCTCCCGATGATTTCTGTCCTGCAAAATAAAGCCAAACTCTGGAAACCAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6Q7J2_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6Q7J2_PIG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               230-2352, gnl|bosTau2|chr13 (28658242-28656152)
               

               
               230-2352, gnl|Hg17|chr7 (48720704-48718595)
               

               
               230-2352, gnl|Mm7|chr7 (121643872-121645922)
               


               
               2077-2287, gnl|bosTau2|chr11 (52392000-52391787)
               

               
               2077-2287, gnl|Hg17|chr7 (48718859-48718655)
               

               
               2077-2287, gnl|Mm7|chr7 (121645671-121645873)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               230-2352, gnl|bosTau2|chr13 (28658242-28656152)
               

               
               230-2352, gnl|Hg17|chr7 (48720704-48718595)
               

               
               230-2352, gnl|Mm7|chr7 (121643872-121645922)
               


               
               2077-2287, gnl|bosTau2|chr11 (52392000-52391787)
               

               
               2077-2287, gnl|Hg17|chr7 (48718859-48718655)
               

               
               2077-2287, gnl|Mm7|chr7 (121645671-121645873)

Expressed library(ies): 39 entry(ies)

More info

Expressed library(ies): 39 entry(ies)

Help | Less info


               
               elu (0.770713)
               

               
               fhi (0.678311)
               

               
               nje (0.66368)
               

               
               cty (0.62448)
               

               
               cly (0.603209)
               

               
               hyp (0.571347)
               

               
               lnt (0.569233)
               

               
               nep (0.551775)
               

               
               cov (0.528611)
               

               
               fty (0.527519)
               

               
               duo (0.518403)
               

               
               jej (0.494609)
               

               
               med (0.465008)
               

               
               cli (0.458435)
               

               
               nms (0.427716)
               

               
               amn (0.417711)
               

               
               fcc (0.39557)
               

               
               eje (0.395335)
               

               
               col (0.390016)
               

               
               ese (0.379507)
               

               
               cga (0.279096)
               

               
               hlv (0.278513)
               

               
               nmm (0.265604)
               

               
               eru (0.240096)
               

               
               ece (0.229305)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 39 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.770713)
               

               
               fhi (0.678311)
               

               
               nje (0.66368)
               

               
               cty (0.62448)
               

               
               cly (0.603209)
               

               
               hyp (0.571347)
               

               
               lnt (0.569233)
               

               
               nep (0.551775)
               

               
               cov (0.528611)
               

               
               fty (0.527519)
               

               
               duo (0.518403)
               

               
               jej (0.494609)
               

               
               med (0.465008)
               

               
               cli (0.458435)
               

               
               nms (0.427716)
               

               
               amn (0.417711)
               

               
               fcc (0.39557)
               

               
               eje (0.395335)
               

               
               col (0.390016)
               

               
               ese (0.379507)
               

               
               cga (0.279096)
               

               
               hlv (0.278513)
               

               
               nmm (0.265604)
               

               
               eru (0.240096)
               

               
               ece (0.229305)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	230-2352, gnl\|bosTau2\|chr13 (28658242-28656152)
	230-2352, gnl\|Hg17\|chr7 (48720704-48718595)
	230-2352, gnl\|Mm7\|chr7 (121643872-121645922)

	2077-2287, gnl\|bosTau2\|chr11 (52392000-52391787)
	2077-2287, gnl\|Hg17\|chr7 (48718859-48718655)
	2077-2287, gnl\|Mm7\|chr7 (121645671-121645873)

	elu (0.770713)
	fhi (0.678311)
	nje (0.66368)
	cty (0.62448)
	cly (0.603209)
	hyp (0.571347)
	lnt (0.569233)
	nep (0.551775)
	cov (0.528611)
	fty (0.527519)
	duo (0.518403)
	jej (0.494609)
	med (0.465008)
	cli (0.458435)
	nms (0.427716)
	amn (0.417711)
	fcc (0.39557)
	eje (0.395335)
	col (0.390016)
	ese (0.379507)
	cga (0.279096)
	hlv (0.278513)
	nmm (0.265604)
	eru (0.240096)
	ece (0.229305)
	nlu (0.191681)
	ton (0.1755)
	fbs (0.175346)
	sin (0.174948)
	nco (0.161734)
	csp (0.161186)
	cag (0.151194)
	pty (0.142714)
	cst (0.140036)
	nca (0.136874)
	ute (0.132784)
	ebs (0.118301)
	ecc (0.115035)
	nbm (0.0993246)