Non-Coding RNA Search

Ss1.1-Pig4-TMW8037M09.5

Sequence:


               
               GTGGAGAAGAAAGCAGAAGAACCATGTTCCCAGAGCTTCCTCTTAAAGTCTAAGAAGAAG
TTTCAAATACCACGTATTTAGGTTGTTGAAGCCAAAGGGAAGAGAGTGGCACAGATCAAA
GAGAGCACTAGGGGTAGAACCCCAGAAAATACTAAAATTTAGTGTGTAGTTCCCAAATCT
GCCTAAATAACTGTAATATCATTAAAAAGAGATTCCACGTTCAAGAAGGAAGAAATTTTA
ACGTCATCAGACAGATAAGGACAGAAAATCCACTGGATTATCCCAGTGGTTCTCAAAATG
CGATTCCTAACTATAGAATATCCAGGTGGATAATTGTTTAAAATACAAATAATTAGGCGC
CTACTCTACACTTGCTGAATCTGAAACTCTGGGAGTTGAGGCCAATCAAGTTCTTTTTTT
TTTTTTTTTTGGTCTTTTTAGGGCCGCACCCAAGGCATATGGAAGTTCCCAGGCCAGGGG
TTGAATCAGAGCTGAAGTTGCTGGCTTACACCACAGCCACAGCAACGCCAGATCCGAGCC
GTGTCTGCCACTTACACCACAGTTCATGGCAACGCCGGATCCTTAACCCACTGAGCAAAG
CCAGGGATCAAACCCACGTCCTCATGGATACTAGTCGTGTTCTTTCACCACTGGGCCACA
ATGGGAACTCCCCAAATTGTGTTTTAATAAACCCTCAGGTTCATCTGCACACTCAAGTTT
GAGAACCACTGTCTTGGCCCGATGAGTAGCAGTGATGGGAGCCACATCACTCTGTATAAC
GTAAACAAGTTAATAACACTTCTTTGAGCAATGTTTTTCTTTTCTGCAGTGATAATACTA
TATTGCACCATTATGGCATTTAGAGCTACTTGCAGGATTTTTTTTTTTTTCTTCCCTTCC
TAAAAGTAAAGGGCAAGTTTGCAGAATTAGATTTGTCAAGTGATAAGGTATGGAAGTAGA
TTCTAAAATCATCAAGAAAATGTTGAGTTATATTCTAAATGTTTTATTTGAAAAGACAGG
AAAGGAGTGAAGTTGCTAAGAGAGTAGATCTTAAAAGTTCTTATCACACACAAAAATTGT
AACTATGTAAGGGTGGATGTGAACTAGACTTATTATGGTGATCATTTTCCTATATATACA
GATATCAAATCATTATATTGTACACCTGAAACGAATATGTTATATGTCAATTATATCTCA
ATAAAAATGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGAGAAGAAAGCAGAAGAACCATGTTCCCAGAGCTTCCTCTTAAAGTCTAAGAAGAAG
TTTCAAATACCACGTATTTAGGTTGTTGAAGCCAAAGGGAAGAGAGTGGCACAGATCAAA
GAGAGCACTAGGGGTAGAACCCCAGAAAATACTAAAATTTAGTGTGTAGTTCCCAAATCT
GCCTAAATAACTGTAATATCATTAAAAAGAGATTCCACGTTCAAGAAGGAAGAAATTTTA
ACGTCATCAGACAGATAAGGACAGAAAATCCACTGGATTATCCCAGTGGTTCTCAAAATG
CGATTCCTAACTATAGAATATCCAGGTGGATAATTGTTTAAAATACAAATAATTAGGCGC
CTACTCTACACTTGCTGAATCTGAAACTCTGGGAGTTGAGGCCAATCAAGTTCTTTTTTT
TTTTTTTTTTGGTCTTTTTAGGGCCGCACCCAAGGCATATGGAAGTTCCCAGGCCAGGGG
TTGAATCAGAGCTGAAGTTGCTGGCTTACACCACAGCCACAGCAACGCCAGATCCGAGCC
GTGTCTGCCACTTACACCACAGTTCATGGCAACGCCGGATCCTTAACCCACTGAGCAAAG
CCAGGGATCAAACCCACGTCCTCATGGATACTAGTCGTGTTCTTTCACCACTGGGCCACA
ATGGGAACTCCCCAAATTGTGTTTTAATAAACCCTCAGGTTCATCTGCACACTCAAGTTT
GAGAACCACTGTCTTGGCCCGATGAGTAGCAGTGATGGGAGCCACATCACTCTGTATAAC
GTAAACAAGTTAATAACACTTCTTTGAGCAATGTTTTTCTTTTCTGCAGTGATAATACTA
TATTGCACCATTATGGCATTTAGAGCTACTTGCAGGATTTTTTTTTTTTTCTTCCCTTCC
TAAAAGTAAAGGGCAAGTTTGCAGAATTAGATTTGTCAAGTGATAAGGTATGGAAGTAGA
TTCTAAAATCATCAAGAAAATGTTGAGTTATATTCTAAATGTTTTATTTGAAAAGACAGG
AAAGGAGTGAAGTTGCTAAGAGAGTAGATCTTAAAAGTTCTTATCACACACAAAAATTGT
AACTATGTAAGGGTGGATGTGAACTAGACTTATTATGGTGATCATTTTCCTATATATACA
GATATCAAATCATTATATTGTACACCTGAAACGAATATGTTATATGTCAATTATATCTCA
ATAAAAATGAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|58568898|gb|AAW79007.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|58568898|gb|AAW79007.1|

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

Help | Less info


               
               1030-1212, gnl|bosTau2|chr10 (48479357-48479172)

Aligned organism(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1030-1212, gnl|bosTau2|chr10 (48479357-48479172)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               ski (0.29347)
               

               
               lnt (0.142308)
               

               
               bla (0.124347)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.29347)
               

               
               lnt (0.142308)
               

               
               bla (0.124347)