Non-Coding RNA Search

Ss1.1-Pig4-TMW8037M13.3

Sequence:


               
               AGCACTGTGAGCGCTGCGAGGTCAACCACTTTGGGTTTGGACCTGAAGGCTGCAAACCCT
GTGACTGTCATCCCGAGGGGGCTCTTTCCCTCCAGTGCAAAGACGATGGTCGCTGTGAAT
GCAGAGAAGGCTTTGTGGGGAACCGCTGTGACCAGTGCGAAGAGAACTATTTCTACAATC
GGTCTTGGCCTGGCTGCCAGGAATGTCCCGCGTGTTACCGGCTGGTGAAGGATAAGGTCG
CTGACCATCGAGCAAAACTCCAGGAATTAGAGAATCTCATTGCAAACCTTGGAACTGGGG
ATGAGATGGTGACGGACCAAGCCTTTGAGGATAGACTGAAGGAAGCAGAGCGAGAGGTGA
CCGACCTCCTTCGAGAGGCCCAGGATGTCAAAGATGTAGACCAGAATTTAATGGATCGCC
TCCAGAGAGTGAATAACACCTTATCCAGCCAAATTAGCCGTTTACAGAATATCCGCAATA
CCATTGAGGAGACCGGAAACTTGGCTGAGCAAGCACGTGCCCGGGTAGAAAGCACAGAGC
AGTTGATTGAAATTGCTTCCAGAGAACTGGAGAAAGCAAAGGTTGCCATTGCCAACGTGT
CGATCACTCAGCCAGAGTCTACAGGGGACCCAAACAACATGACTCTTTTGGCAGAAGAGG
CACGAAAGCTTGCTGAGCGCCATAAACAAGAAGCTGATGACATCGTACGAGTGGCAAAGA
CAGCCAATGATACATCAACTGAGGCATATAATCTGCTTTTGAAGACCCTGGCAGGAGAAA
ATCAAACAGCTTTTGAGATTGAAGAGCTGAATAGAAAGTATGAACAAGCGAAGAACATCT
CACAGGATCTAGAGACACAAGCCGCCCGAGTCCATGAGGAGGCCAAAAAGGCTGGTGACA
AAGCCGTGGAGATCTATGCCAGTGTTGCCCAGCTGACACCTGTGGACTCAGAAGCACTGG
AGAATGCGGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCACTGTGAGCGCTGCGAGGTCAACCACTTTGGGTTTGGACCTGAAGGCTGCAAACCCT
GTGACTGTCATCCCGAGGGGGCTCTTTCCCTCCAGTGCAAAGACGATGGTCGCTGTGAAT
GCAGAGAAGGCTTTGTGGGGAACCGCTGTGACCAGTGCGAAGAGAACTATTTCTACAATC
GGTCTTGGCCTGGCTGCCAGGAATGTCCCGCGTGTTACCGGCTGGTGAAGGATAAGGTCG
CTGACCATCGAGCAAAACTCCAGGAATTAGAGAATCTCATTGCAAACCTTGGAACTGGGG
ATGAGATGGTGACGGACCAAGCCTTTGAGGATAGACTGAAGGAAGCAGAGCGAGAGGTGA
CCGACCTCCTTCGAGAGGCCCAGGATGTCAAAGATGTAGACCAGAATTTAATGGATCGCC
TCCAGAGAGTGAATAACACCTTATCCAGCCAAATTAGCCGTTTACAGAATATCCGCAATA
CCATTGAGGAGACCGGAAACTTGGCTGAGCAAGCACGTGCCCGGGTAGAAAGCACAGAGC
AGTTGATTGAAATTGCTTCCAGAGAACTGGAGAAAGCAAAGGTTGCCATTGCCAACGTGT
CGATCACTCAGCCAGAGTCTACAGGGGACCCAAACAACATGACTCTTTTGGCAGAAGAGG
CACGAAAGCTTGCTGAGCGCCATAAACAAGAAGCTGATGACATCGTACGAGTGGCAAAGA
CAGCCAATGATACATCAACTGAGGCATATAATCTGCTTTTGAAGACCCTGGCAGGAGAAA
ATCAAACAGCTTTTGAGATTGAAGAGCTGAATAGAAAGTATGAACAAGCGAAGAACATCT
CACAGGATCTAGAGACACAAGCCGCCCGAGTCCATGAGGAGGCCAAAAAGGCTGGTGACA
AAGCCGTGGAGATCTATGCCAGTGTTGCCCAGCTGACACCTGTGGACTCAGAAGCACTGG
AGAATGCGGCAA

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               58-254, gnl|bosTau2|chr16 (45007343-45007540)
               

               
               58-254, gnl|canFam2|chr7 (19466117-19466277)
               

               
               58-254, gnl|danRer3|chr2 (28824115-28824292)
               

               
               58-254, gnl|dasNov1|scaffold_125692 (2254-2094)
               

               
               58-254, gnl|echTel1|scaffold_311727 (28332-28492)
               

               
               58-254, gnl|fr1|chrUn (278898489-278898333)
               

               
               58-254, gnl|galGal2|chr8 (7516500-7516646)
               

               
               58-254, gnl|hg17|chr1 (179827999-179828159)
               

               
               58-254, gnl|Hg17|chr1 (179828018-179828215)
               

               
               58-254, gnl|loxAfr1|scaffold_21044 (34668-34828)
               

               
               58-254, gnl|mm7|chr1 (153201582-153201426)
               

               
               58-254, gnl|Mm7|chr1 (153201565-153201368)
               

               
               58-254, gnl|monDom2|scaffold_16 (36978505-36978665)
               

               
               58-254, gnl|oryCun1|scaffold_135878 (5421-5579)
               

               
               58-254, gnl|panTro1|chr1 (162445522-162445682)
               

               
               58-254, gnl|rheMac2|chr1 (187535154-187534994)
               

               
               58-254, gnl|rn3|chr13 (68278870-68278710)
               

               
               58-254, gnl|tetNig1|chr15_random (62755-62598)
               

               
               58-254, gnl|xenTro1|scaffold_126 (546677-546837)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               58-254, gnl|bosTau2|chr16 (45007343-45007540)
               

               
               58-254, gnl|canFam2|chr7 (19466117-19466277)
               

               
               58-254, gnl|danRer3|chr2 (28824115-28824292)
               

               
               58-254, gnl|dasNov1|scaffold_125692 (2254-2094)
               

               
               58-254, gnl|echTel1|scaffold_311727 (28332-28492)
               

               
               58-254, gnl|fr1|chrUn (278898489-278898333)
               

               
               58-254, gnl|galGal2|chr8 (7516500-7516646)
               

               
               58-254, gnl|hg17|chr1 (179827999-179828159)
               

               
               58-254, gnl|Hg17|chr1 (179828018-179828215)
               

               
               58-254, gnl|loxAfr1|scaffold_21044 (34668-34828)
               

               
               58-254, gnl|mm7|chr1 (153201582-153201426)
               

               
               58-254, gnl|Mm7|chr1 (153201565-153201368)
               

               
               58-254, gnl|monDom2|scaffold_16 (36978505-36978665)
               

               
               58-254, gnl|oryCun1|scaffold_135878 (5421-5579)
               

               
               58-254, gnl|panTro1|chr1 (162445522-162445682)
               

               
               58-254, gnl|rheMac2|chr1 (187535154-187534994)
               

               
               58-254, gnl|rn3|chr13 (68278870-68278710)
               

               
               58-254, gnl|tetNig1|chr15_random (62755-62598)
               

               
               58-254, gnl|xenTro1|scaffold_126 (546677-546837)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	58-254, gnl\|bosTau2\|chr16 (45007343-45007540)
	58-254, gnl\|canFam2\|chr7 (19466117-19466277)
	58-254, gnl\|danRer3\|chr2 (28824115-28824292)
	58-254, gnl\|dasNov1\|scaffold_125692 (2254-2094)
	58-254, gnl\|echTel1\|scaffold_311727 (28332-28492)
	58-254, gnl\|fr1\|chrUn (278898489-278898333)
	58-254, gnl\|galGal2\|chr8 (7516500-7516646)
	58-254, gnl\|hg17\|chr1 (179827999-179828159)
	58-254, gnl\|Hg17\|chr1 (179828018-179828215)
	58-254, gnl\|loxAfr1\|scaffold_21044 (34668-34828)
	58-254, gnl\|mm7\|chr1 (153201582-153201426)
	58-254, gnl\|Mm7\|chr1 (153201565-153201368)
	58-254, gnl\|monDom2\|scaffold_16 (36978505-36978665)
	58-254, gnl\|oryCun1\|scaffold_135878 (5421-5579)
	58-254, gnl\|panTro1\|chr1 (162445522-162445682)
	58-254, gnl\|rheMac2\|chr1 (187535154-187534994)
	58-254, gnl\|rn3\|chr13 (68278870-68278710)
	58-254, gnl\|tetNig1\|chr15_random (62755-62598)
	58-254, gnl\|xenTro1\|scaffold_126 (546677-546837)