Non-Coding RNA Search

Ss1.1-Pig4-TMW8037M16.3

Sequence:


               
               TTAGATATCATATCTGAAGATATTAGTGAATTACAGAAGAATCAAACTACAACTATGGCC
AAAATTGCACAGTACAAGAGGAAACTCATGGATCTTTCCCACAGAACCTTACAGGTCCTA
ATCAAACAGGAAATTCAGAGGAAGAGTGGATATGCCATCCAAGCTGATGAAGAGCAGTTG
CGAGTTCAGCTAGATACAATTCAGTGTGAACTAAATGCCCCCACTCAGTTTAAGGGCCGA
CTCAATGAACTGATGTCCCAAATCAGGATGCAGAATCATTTTGGAGCAGTCAGATCTGAA
GAAAGATATTATATAGATGCAGATCTGTTGCGAGAAATCAAGCAGCATTTGAAACAACAA
CAGGAAGGCCTTAGCCACTTGATTAGCATCATAAAAGATGACCTAGAAGATATCAAGTTG
GTAGAACACGGATTGAATGAAACCCTCCACATCAGAAGTGGTGTCTTCAGTTGACAGTTC
ACAAACTCATGTTTAAGGTTTGTGACGTACATCTTCTTGTTATACACCAAGCTTTCCTTA
AGAATGAAACTGACCACATGGAGGGGGGGAAAAAACCAATCCTCTCTCCTGGCTTGGTTT
TTGAGAAGGTTACTGGTAAATTATTAATCATCGAATCTGAAATGAGTCATTTAACTGCTC
TTCAGAGATAGCCTTTGAAAGATTTACATCTAAAAGCTGTAATTACTTTAAGAGAATATG
TAATTACAAAAAATATGTACTATTGTACATTTTTACAGCAGCATCATTCAAAACAATCAG
TGTTTAATGATTATTCTCCATTGAGCCTGAACTCTGCTTTCCGTGGCAAGTAAATATGAA
ATATCAACTTTGCACATAACAAAATAAACTGTATAATCATTTGGCTGTTGGAGATTTGTA
CTTCAAAATGTAAATGTACATCAGTTTTTATATTTGTGAATTCATCTGTGGGAAGAGGAG
CAAAGAAAAATCTAAGTATTTAATGATTAATGTGGTTTTCTTTTCATTCTATAAAGATTT
GAAAATATATTTTTATATTATTTTACTTATTTGGAATTTACAGAACACACCTAAGCAATT
AGGATATAACAAAGTTATGTTTTATCATTTTTCAACTTTTTTGTTTTTTAAACTTTTTTA
TTTCTAAAAAAGATAAACATGAATAAATTGTTGATTGTAATTACTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAGATATCATATCTGAAGATATTAGTGAATTACAGAAGAATCAAACTACAACTATGGCC
AAAATTGCACAGTACAAGAGGAAACTCATGGATCTTTCCCACAGAACCTTACAGGTCCTA
ATCAAACAGGAAATTCAGAGGAAGAGTGGATATGCCATCCAAGCTGATGAAGAGCAGTTG
CGAGTTCAGCTAGATACAATTCAGTGTGAACTAAATGCCCCCACTCAGTTTAAGGGCCGA
CTCAATGAACTGATGTCCCAAATCAGGATGCAGAATCATTTTGGAGCAGTCAGATCTGAA
GAAAGATATTATATAGATGCAGATCTGTTGCGAGAAATCAAGCAGCATTTGAAACAACAA
CAGGAAGGCCTTAGCCACTTGATTAGCATCATAAAAGATGACCTAGAAGATATCAAGTTG
GTAGAACACGGATTGAATGAAACCCTCCACATCAGAAGTGGTGTCTTCAGTTGACAGTTC
ACAAACTCATGTTTAAGGTTTGTGACGTACATCTTCTTGTTATACACCAAGCTTTCCTTA
AGAATGAAACTGACCACATGGAGGGGGGGAAAAAACCAATCCTCTCTCCTGGCTTGGTTT
TTGAGAAGGTTACTGGTAAATTATTAATCATCGAATCTGAAATGAGTCATTTAACTGCTC
TTCAGAGATAGCCTTTGAAAGATTTACATCTAAAAGCTGTAATTACTTTAAGAGAATATG
TAATTACAAAAAATATGTACTATTGTACATTTTTACAGCAGCATCATTCAAAACAATCAG
TGTTTAATGATTATTCTCCATTGAGCCTGAACTCTGCTTTCCGTGGCAAGTAAATATGAA
ATATCAACTTTGCACATAACAAAATAAACTGTATAATCATTTGGCTGTTGGAGATTTGTA
CTTCAAAATGTAAATGTACATCAGTTTTTATATTTGTGAATTCATCTGTGGGAAGAGGAG
CAAAGAAAAATCTAAGTATTTAATGATTAATGTGGTTTTCTTTTCATTCTATAAAGATTT
GAAAATATATTTTTATATTATTTTACTTATTTGGAATTTACAGAACACACCTAAGCAATT
AGGATATAACAAAGTTATGTTTTATCATTTTTCAACTTTTTTGTTTTTTAAACTTTTTTA
TTTCTAAAAAAGATAAACATGAATAAATTGTTGATTGTAATTACTTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61819937|ref|XP_583434.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61819937|ref|XP_583434.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               403-522, - strand, RNAz p=0.885705

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               403-522, - strand, RNAz p=0.885705

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-885, gnl|bosTau2|chr26 (26168172-26169054)
               

               
               1-885, gnl|Hg17|chr4 (77408993-77393289)
               

               
               1-885, gnl|Mm7|chr1 (129680166-129679333)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-885, gnl|bosTau2|chr26 (26168172-26169054)
               

               
               1-885, gnl|Hg17|chr4 (77408993-77393289)
               

               
               1-885, gnl|Mm7|chr1 (129680166-129679333)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               lin (0.291206)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               jej (0.0989218)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.291206)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               jej (0.0989218)

	1-885, gnl\|bosTau2\|chr26 (26168172-26169054)
	1-885, gnl\|Hg17\|chr4 (77408993-77393289)
	1-885, gnl\|Mm7\|chr1 (129680166-129679333)

	lin (0.291206)
	sag (0.182715)
	mgm (0.180343)
	gul (0.177588)
	lnt (0.142308)
	pla (0.133672)
	kid (0.129735)
	ova (0.129132)
	jej (0.0989218)