Ss1.1-Pig4-TMW8037M19.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCGACACAGTATGGAAAACATGGAACTTATGAAGTTAACACCAGAAAAGGTACAAAACT GGAACAGTGAAATTCTTGCTAAACAAAAACCTCTTATGGCCAAACCTTCTGCAAAGCTCC TCTTTGTCAACAGATTGAAAGGGAAAAAATACAAAACGAATTCCTCCACTAAAGTTCTCC AAGATGCCAGTAATTCCATTGACCACCGAATTCCAAACTCTCAAAGGATCAGTGCAGATA CTATTGGAGATGAAGGGTTCTTTGACCTGTTAAGCCGATTTCAAAGCAATCGGATGGATG ATCAGAGGTGCTGCTTACAAGAAAAGAACTCTGGATCAGCTTCTACAGCAGGTTCTTCCA CTCCCCCCAGAATGATGCTAAAAACGCCCTCTGCTTCCGTGGTGTCCCCCAACACAGATG AGTTTTTAGACCTTCTCGCCAGCTCACAGAGCCGCCGTCTGGATGACCAGAGGGCCAGTT TCAGTAACTTGCCAGGACTTCGTCTGACACAAAACAACAATCAGTCACTACTTGGCCACC TGATGACTAAGGACAGCAAAGAGCCTGACGAAGATTTCTTTGACATCCTTGTAAAATGTC AGGGGTCCCGATTAGATGATCAAAGATGTGCACCACCACCTGCTGCCACAAAGGGACCAA CAGTACCGGATGACGACTTTTTCAGCCTTATTTTACGGTCTCAGGCAAAAAGAATGGATG AACAGAGAGTTCTTCTACAAAAAGATCAAAACAGAGACACTGAACTTGGGCTAAAGGACC TTTTGCAGAGTAATGCTTTGTTGGAACTTAAAAATTCAGGAAAAAAATAAGCCAACCACT AATCACTATGAATATAGTTTTTTAAAGCGACCTTATTTCCTTTCAGAATACTGCAGGGGA ATCCAATCCTTTTTTCCTTAAAAGGAGAAATTACAGCACTGTGCTCCAGTTTAAAATGTT TTTAGCGTGATGTAAATACTTAACCTTTATTAGTACTGTATTAATTAACATTCCTCTGGA CACTCGCTTGTTTCAGGGTGTGGGTGTCTTAAAAGGTGCTTCATCAACTTTCCGTGATTA CTGCTTGGGATTCTGTTCGTTGGCAGCTTGTTATGTTCCTTGACCTGGTATTTGTAAAGT AGGAAGCTAAATGAATCTAGACCAGAATTTAATCCTCTTGCTGAGCTAATATTTTTTACT CTTAACTGACCATGGCATTTTTTTTACACTTAACCATGGATGTAGTGAGAAATTAGTTTC AGAAAATAATGTACTTGACCAATGTGTAAAAAATTATATAGACTATTAAAAAAGTTAGGT ATTTTTCCCACTAAAAAAATCTCTATTTTCAACATATTTTTCGGCCAAAGGCATTATAAA AGAAACTCTTAAGAATAAACTTCGTTTAGTGTGAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCGACACAGTATGGAAAACATGGAACTTATGAAGTTAACACCAGAAAAGGTACAAAACT GGAACAGTGAAATTCTTGCTAAACAAAAACCTCTTATGGCCAAACCTTCTGCAAAGCTCC TCTTTGTCAACAGATTGAAAGGGAAAAAATACAAAACGAATTCCTCCACTAAAGTTCTCC AAGATGCCAGTAATTCCATTGACCACCGAATTCCAAACTCTCAAAGGATCAGTGCAGATA CTATTGGAGATGAAGGGTTCTTTGACCTGTTAAGCCGATTTCAAAGCAATCGGATGGATG ATCAGAGGTGCTGCTTACAAGAAAAGAACTCTGGATCAGCTTCTACAGCAGGTTCTTCCA CTCCCCCCAGAATGATGCTAAAAACGCCCTCTGCTTCCGTGGTGTCCCCCAACACAGATG AGTTTTTAGACCTTCTCGCCAGCTCACAGAGCCGCCGTCTGGATGACCAGAGGGCCAGTT TCAGTAACTTGCCAGGACTTCGTCTGACACAAAACAACAATCAGTCACTACTTGGCCACC TGATGACTAAGGACAGCAAAGAGCCTGACGAAGATTTCTTTGACATCCTTGTAAAATGTC AGGGGTCCCGATTAGATGATCAAAGATGTGCACCACCACCTGCTGCCACAAAGGGACCAA CAGTACCGGATGACGACTTTTTCAGCCTTATTTTACGGTCTCAGGCAAAAAGAATGGATG AACAGAGAGTTCTTCTACAAAAAGATCAAAACAGAGACACTGAACTTGGGCTAAAGGACC TTTTGCAGAGTAATGCTTTGTTGGAACTTAAAAATTCAGGAAAAAAATAAGCCAACCACT AATCACTATGAATATAGTTTTTTAAAGCGACCTTATTTCCTTTCAGAATACTGCAGGGGA ATCCAATCCTTTTTTCCTTAAAAGGAGAAATTACAGCACTGTGCTCCAGTTTAAAATGTT TTTAGCGTGATGTAAATACTTAACCTTTATTAGTACTGTATTAATTAACATTCCTCTGGA CACTCGCTTGTTTCAGGGTGTGGGTGTCTTAAAAGGTGCTTCATCAACTTTCCGTGATTA CTGCTTGGGATTCTGTTCGTTGGCAGCTTGTTATGTTCCTTGACCTGGTATTTGTAAAGT AGGAAGCTAAATGAATCTAGACCAGAATTTAATCCTCTTGCTGAGCTAATATTTTTTACT CTTAACTGACCATGGCATTTTTTTTACACTTAACCATGGATGTAGTGAGAAATTAGTTTC AGAAAATAATGTACTTGACCAATGTGTAAAAAATTATATAGACTATTAAAAAAGTTAGGT ATTTTTCCCACTAAAAAAATCTCTATTTTCAACATATTTTTCGGCCAAAGGCATTATAAA AGAAACTCTTAAGAATAAACTTCGTTTAGTGTGAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 852-965, - strand, RNAz p=0.89261 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 852-965, - strand, RNAz p=0.89261 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 49-227, gnl|bosTau2|chr3 (31389840-31389662) | |
| 49-227, gnl|canFam2|chr6 (45902044-45901884) | |
| 49-227, gnl|danRer3|chr2 (40662152-40662308) | |
| 49-227, gnl|dasNov1|scaffold_11908 (10132-9972) | |
| 49-227, gnl|echTel1|scaffold_309299 (111045-110885) | |
| 49-227, gnl|fr1|chrUn (136105796-136105633) | |
| 49-227, gnl|galGal2|chr8 (1298281-1298441) | |
| 49-227, gnl|hg17|chr1 (109173270-109173430) | |
| 49-227, gnl|Hg17|chr1 (109173275-109173453) | |
| 49-227, gnl|mm7|chr3 (108505295-108505133) | |
| 49-227, gnl|Mm7|chr3 (108505289-108505108) | |
| 49-227, gnl|monDom2|scaffold_0 (7798357-7798197) | |
| 49-227, gnl|oryCun1|scaffold_213145 (1651-1491) | |
| 49-227, gnl|panTro1|chr1 (108101223-108101383) | |
| 49-227, gnl|rn3|chr2 (204254497-204254335) | |
| 49-227, gnl|tetNig1|chr15 (4989381-4989544) | |
| 49-227, gnl|xenTro1|scaffold_388 (110427-110267) | |
| 228-384, gnl|bosTau2|chr3 (31387342-31387186) | |
| 228-384, gnl|canFam2|chr6 (45899446-45899320) | |
| 228-384, gnl|danRer3|chr2 (40663185-40663308) | |
| 228-384, gnl|dasNov1|scaffold_11908 (5176-5050) | |
| 228-384, gnl|echTel1|scaffold_309299 (108253-108127) | |
| 228-384, gnl|fr1|chrUn (136105507-136105404) | |
| 228-384, gnl|galGal2|chr8 (1299205-1299332) | |
| 228-384, gnl|hg17|chr1 (109177063-109177189) | |
| 228-384, gnl|Hg17|chr1 (109177084-109177240) | |
| 228-384, gnl|loxAfr1|scaffold_42504 (38068-37942) | |
| 228-384, gnl|mm7|chr3 (108501129-108501010) | |
| 228-384, gnl|Mm7|chr3 (108501110-108500960) | |
| 228-384, gnl|monDom2|scaffold_0 (7796107-7795981) | |
| 228-384, gnl|oryCun1|scaffold_213145 (645-518) | |
| 228-384, gnl|panTro1|chr1 (108105015-108105141) | |
| 228-384, gnl|rheMac2|chr1 (111936566-111936692) | |
| 228-384, gnl|rn3|chr2 (204244678-204244562) | |
| 228-384, gnl|tetNig1|chr15 (4989631-4989757) | |
| 228-384, gnl|xenTro1|scaffold_388 (109220-109108) | |
| 577-1413, gnl|bosTau2|chr3 (31381424-31380582) | |
| 577-1413, gnl|Hg17|chr1 (109184337-109185126) | |
| 577-1413, gnl|Mm7|chr3 (108498116-108497379) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 49-227, gnl|bosTau2|chr3 (31389840-31389662) | |
| 49-227, gnl|canFam2|chr6 (45902044-45901884) | |
| 49-227, gnl|danRer3|chr2 (40662152-40662308) | |
| 49-227, gnl|dasNov1|scaffold_11908 (10132-9972) | |
| 49-227, gnl|echTel1|scaffold_309299 (111045-110885) | |
| 49-227, gnl|fr1|chrUn (136105796-136105633) | |
| 49-227, gnl|galGal2|chr8 (1298281-1298441) | |
| 49-227, gnl|hg17|chr1 (109173270-109173430) | |
| 49-227, gnl|Hg17|chr1 (109173275-109173453) | |
| 49-227, gnl|mm7|chr3 (108505295-108505133) | |
| 49-227, gnl|Mm7|chr3 (108505289-108505108) | |
| 49-227, gnl|monDom2|scaffold_0 (7798357-7798197) | |
| 49-227, gnl|oryCun1|scaffold_213145 (1651-1491) | |
| 49-227, gnl|panTro1|chr1 (108101223-108101383) | |
| 49-227, gnl|rn3|chr2 (204254497-204254335) | |
| 49-227, gnl|tetNig1|chr15 (4989381-4989544) | |
| 49-227, gnl|xenTro1|scaffold_388 (110427-110267) | |
| 228-384, gnl|bosTau2|chr3 (31387342-31387186) | |
| 228-384, gnl|canFam2|chr6 (45899446-45899320) | |
| 228-384, gnl|danRer3|chr2 (40663185-40663308) | |
| 228-384, gnl|dasNov1|scaffold_11908 (5176-5050) | |
| 228-384, gnl|echTel1|scaffold_309299 (108253-108127) | |
| 228-384, gnl|fr1|chrUn (136105507-136105404) | |
| 228-384, gnl|galGal2|chr8 (1299205-1299332) | |
| 228-384, gnl|hg17|chr1 (109177063-109177189) | |
| 228-384, gnl|Hg17|chr1 (109177084-109177240) | |
| 228-384, gnl|loxAfr1|scaffold_42504 (38068-37942) | |
| 228-384, gnl|mm7|chr3 (108501129-108501010) | |
| 228-384, gnl|Mm7|chr3 (108501110-108500960) | |
| 228-384, gnl|monDom2|scaffold_0 (7796107-7795981) | |
| 228-384, gnl|oryCun1|scaffold_213145 (645-518) | |
| 228-384, gnl|panTro1|chr1 (108105015-108105141) | |
| 228-384, gnl|rheMac2|chr1 (111936566-111936692) | |
| 228-384, gnl|rn3|chr2 (204244678-204244562) | |
| 228-384, gnl|tetNig1|chr15 (4989631-4989757) | |
| 228-384, gnl|xenTro1|scaffold_388 (109220-109108) | |
| 577-1413, gnl|bosTau2|chr3 (31381424-31380582) | |
| 577-1413, gnl|Hg17|chr1 (109184337-109185126) | |
| 577-1413, gnl|Mm7|chr3 (108498116-108497379) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ret (0.257467) | |
| nca (0.136874) | |
| ova (0.129132) | |
| nbm (0.0993246) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ret (0.257467) | |
| nca (0.136874) | |
| ova (0.129132) | |
| nbm (0.0993246) |