Non-Coding RNA Search

Ss1.1-Pig4-TMW8037M20.3

Sequence:


               
               AAAAAAAATCCTATATGCCCACTATAGATGTTTCTCTGTTTGCCATTTGTGGTAACTATC
ACGACTAAATTGGATAGCTTTATTTTACAAAGGTATGGCAAGTTTACAGAGTGGTGTCTA
AATCTACATTAGTTGCATTTGCACTAAATGTTAATAATACTTTTGCAATTTATTCTGTAA
ATAAAATGATTACACTAAAAATATTTGTATTTAAAAAAGAAGAAAAAGATACATATAACC
TTCGGATATAATCCTGCCCAACCAGATTTAGGACTGAGTTAGGGAGTATGAAAGGAGTTG
AAACGAGATCAAAATTTGGAGAGGTACTAGCCCTTGACACAACATTCAGACCCTTTAGAA
TTATTTCTGTATGGCTGATGCTATGCTGAATACACATGATGTTTTTCTAAACTATAGTTA
TTTCTCTTCCCCATGCCCCCCCCCCAAAAAAAATCATTTTACTCGCTTTTCTACTCACTC
TTTTGTACTCTGATAGAAACATGAAAATATTGGTGATGAGGGGTTTTGTCCCTGAGTGCC
CACTGTACAGTTCAGGAAAGCACAGTGTTTCACTTGGAATCAGAGCTCCTGGTTTTGAGG
TGAAGAGTGATCCTAGCAGCTCTTGATTTGGGTTCGCCGTGGGGCAGCCAGACCAAGGAG
GAGGACGACTGGGAGAGCTCTAAGACTGTAAAACAAGGAAGAGGAGGAATGGGGTTCCCA
TTTGTTCGGTGTCATCCGCTAATTTGTACTCCTACACAACATCAGTGTCAATGGCTAATG
AGAAAATTTTAGTTGGGCTGAGCTGGTTCTCTTGTGAAATTGTGCTGGTTATCTTTAAGC
TTATCAGTTGTTTGTCCAGTTAAACACTTTCACCAGTATTTGATCCAAGTTGTACAGACG
ATGTATTTGGATTGTCATTGTTCATCTGCAGACTCAAAACATAATCATTTTAAAGTACCT
TGGGAGTGTGTAGAGTGTAACTATTCTATAATAGCTTTATGATCCTGATGATGTTTTTAA
AAAGTAATTAAGTTGGATCTTCCATGTTACAATCACAAAATTAAACCCAGTATTTAAAAG
TGGAAAAGTATTAAAATATTATGGACAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAATCCTATATGCCCACTATAGATGTTTCTCTGTTTGCCATTTGTGGTAACTATC
ACGACTAAATTGGATAGCTTTATTTTACAAAGGTATGGCAAGTTTACAGAGTGGTGTCTA
AATCTACATTAGTTGCATTTGCACTAAATGTTAATAATACTTTTGCAATTTATTCTGTAA
ATAAAATGATTACACTAAAAATATTTGTATTTAAAAAAGAAGAAAAAGATACATATAACC
TTCGGATATAATCCTGCCCAACCAGATTTAGGACTGAGTTAGGGAGTATGAAAGGAGTTG
AAACGAGATCAAAATTTGGAGAGGTACTAGCCCTTGACACAACATTCAGACCCTTTAGAA
TTATTTCTGTATGGCTGATGCTATGCTGAATACACATGATGTTTTTCTAAACTATAGTTA
TTTCTCTTCCCCATGCCCCCCCCCCAAAAAAAATCATTTTACTCGCTTTTCTACTCACTC
TTTTGTACTCTGATAGAAACATGAAAATATTGGTGATGAGGGGTTTTGTCCCTGAGTGCC
CACTGTACAGTTCAGGAAAGCACAGTGTTTCACTTGGAATCAGAGCTCCTGGTTTTGAGG
TGAAGAGTGATCCTAGCAGCTCTTGATTTGGGTTCGCCGTGGGGCAGCCAGACCAAGGAG
GAGGACGACTGGGAGAGCTCTAAGACTGTAAAACAAGGAAGAGGAGGAATGGGGTTCCCA
TTTGTTCGGTGTCATCCGCTAATTTGTACTCCTACACAACATCAGTGTCAATGGCTAATG
AGAAAATTTTAGTTGGGCTGAGCTGGTTCTCTTGTGAAATTGTGCTGGTTATCTTTAAGC
TTATCAGTTGTTTGTCCAGTTAAACACTTTCACCAGTATTTGATCCAAGTTGTACAGACG
ATGTATTTGGATTGTCATTGTTCATCTGCAGACTCAAAACATAATCATTTTAAAGTACCT
TGGGAGTGTGTAGAGTGTAACTATTCTATAATAGCTTTATGATCCTGATGATGTTTTTAA
AAAGTAATTAAGTTGGATCTTCCATGTTACAATCACAAAATTAAACCCAGTATTTAAAAG
TGGAAAAGTATTAAAATATTATGGACAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               510-626, + strand, RNAz p=0.96051

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               510-626, + strand, RNAz p=0.96051

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-248, gnl|bosTau2|chr10 (1883269-1883514)
               

               
               3-248, gnl|Hg17|chr5 (74703852-74703580)
               

               
               3-248, gnl|Mm7|chr13 (93708381-93708658)
               


               
               249-1109, gnl|bosTau2|chr10 (1883539-1884414)
               

               
               249-1109, gnl|Hg17|chr5 (74703555-74702686)
               

               
               249-1109, gnl|Mm7|chr13 (93708681-93709516)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-248, gnl|bosTau2|chr10 (1883269-1883514)
               

               
               3-248, gnl|Hg17|chr5 (74703852-74703580)
               

               
               3-248, gnl|Mm7|chr13 (93708381-93708658)
               


               
               249-1109, gnl|bosTau2|chr10 (1883539-1884414)
               

               
               249-1109, gnl|Hg17|chr5 (74703555-74702686)
               

               
               249-1109, gnl|Mm7|chr13 (93708681-93709516)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               lyg (0.665513)
               

               
               fco (0.471624)
               

               
               mga (0.32041)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               lin (0.291206)
               

               
               ova (0.258264)
               

               
               tra (0.246184)
               

               
               spc (0.226732)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               ute (0.132784)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.665513)
               

               
               fco (0.471624)
               

               
               mga (0.32041)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               lin (0.291206)
               

               
               ova (0.258264)
               

               
               tra (0.246184)
               

               
               spc (0.226732)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               ute (0.132784)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

	3-248, gnl\|bosTau2\|chr10 (1883269-1883514)
	3-248, gnl\|Hg17\|chr5 (74703852-74703580)
	3-248, gnl\|Mm7\|chr13 (93708381-93708658)

	249-1109, gnl\|bosTau2\|chr10 (1883539-1884414)
	249-1109, gnl\|Hg17\|chr5 (74703555-74702686)
	249-1109, gnl\|Mm7\|chr13 (93708681-93709516)

	lyg (0.665513)
	fco (0.471624)
	mga (0.32041)
	sme (0.305437)
	cte (0.29274)
	lin (0.291206)
	ova (0.258264)
	tra (0.246184)
	spc (0.226732)
	cmu (0.186393)
	sag (0.182715)
	sin (0.174948)
	nje (0.16592)
	cki (0.165235)
	lun (0.150489)
	bfe (0.149858)
	ski (0.146735)
	spl (0.143184)
	ute (0.132784)
	pgl (0.118483)
	jej (0.0989218)