Non-Coding RNA Search

Ss1.1-Pig4-TMW8037N07.3

Sequence:


               
               AGAATTTGGCCTACTCTCACTACTCATATGTTTTCATACACATTTCTCACATGCTCTTAA
ATGCAACAAAAGAATTCTATTTTAAGAAAATGTAACTTAGCGTTACATCAAAAAAATACC
GTCTCGTAAAAGGGGATATTCAGTAGAACAGTGATCATGTAAATAAACATCTCTCTCAAA
TGTACCCAATGTGATTACTAAGCATAGTCTAGGGCCCAGAGCTTGAGCCAGGGAGGATTT
ATTTGTTCTTTTCTCTATTTTTCCGTGAATTGTGCAACTATAGGTGAGTCACTTAACCTT
TCTGTGCCTCAGTTTCTCTACCTCTAAAGGGTGGGATGGGTCTCCAAACCTACTGTGTTA
GCGCGCTCGCACGTTCAGGAGGGCAGGTAGCCTCAGACTGGAGCGCGTGTGCAGGACTGC
TCTGGAGCGATGCACTGAGCGCCATGTCTTCTCAGGACTGTGCCACAGACACGCAGCTTC
GAGCCCTGAGAAAGCGAAGGAAGCACTGGCTGTAAAGTTTGCACGATTCCATGAAGCTTT
AATTTTCCTTTTTTTGTTTTAAAAGGAAGGGTTTTTTATGTTCTGTTGTAAAATGTGGAA
ACTAAACAGGGACTGAGAAAAGCTCCACTGAGAGACCCCGCTCTGACGGTGTGATGAGCT
TCTCTGACGTTCTGCAAAGGTTTATGTTCTGCAGAAGATTCAGTGACCTGTGAACCAGAT
TGATTCTGTTTTGTTGAATTTGTAATGAATGATGCGGAACTTTCTGCTTCCAAGTGGCTC
AATCCTGACCTTGAACTACCTGACACCAGGTGAATGTCAGGAACTCCCAAACCACTAGTG
CCAAAGGGTCACATTGAAAAGTTCAGAATAGTTCTTTTATCTGTCAGACTGTAATAATTC
CCCCCCCCCACCCTCGTATCAGTGTTTTTGCACTTGGAAATATTTAAGGGTACTGTGTTT
TTGCCTTTTTAAATGATAACTATTACTTTCTTGTAAAATGGAATATAATTGTTGCAGAGA
GGAACAAAACTGGATAAAGAAAATGTAAAGTGTTGATTGGTTACATAAAATTTTTGTCAC
GTAAATGTATCAGGGGAGCTTCCACTTAGCATATTCACACACATTTGTCAATGATTAAGA
CTTGCTTATATTTTGCTTTATAGCAGTAGTCATTAGCATGTTGTAACTGCCTTATGTAAA
TAAAAAGGCTATTTATTAAGTTTTCCAATACTATTTATTAATCTGTATGTGTTTTAAAAT
AAAATAACTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAATTTGGCCTACTCTCACTACTCATATGTTTTCATACACATTTCTCACATGCTCTTAA
ATGCAACAAAAGAATTCTATTTTAAGAAAATGTAACTTAGCGTTACATCAAAAAAATACC
GTCTCGTAAAAGGGGATATTCAGTAGAACAGTGATCATGTAAATAAACATCTCTCTCAAA
TGTACCCAATGTGATTACTAAGCATAGTCTAGGGCCCAGAGCTTGAGCCAGGGAGGATTT
ATTTGTTCTTTTCTCTATTTTTCCGTGAATTGTGCAACTATAGGTGAGTCACTTAACCTT
TCTGTGCCTCAGTTTCTCTACCTCTAAAGGGTGGGATGGGTCTCCAAACCTACTGTGTTA
GCGCGCTCGCACGTTCAGGAGGGCAGGTAGCCTCAGACTGGAGCGCGTGTGCAGGACTGC
TCTGGAGCGATGCACTGAGCGCCATGTCTTCTCAGGACTGTGCCACAGACACGCAGCTTC
GAGCCCTGAGAAAGCGAAGGAAGCACTGGCTGTAAAGTTTGCACGATTCCATGAAGCTTT
AATTTTCCTTTTTTTGTTTTAAAAGGAAGGGTTTTTTATGTTCTGTTGTAAAATGTGGAA
ACTAAACAGGGACTGAGAAAAGCTCCACTGAGAGACCCCGCTCTGACGGTGTGATGAGCT
TCTCTGACGTTCTGCAAAGGTTTATGTTCTGCAGAAGATTCAGTGACCTGTGAACCAGAT
TGATTCTGTTTTGTTGAATTTGTAATGAATGATGCGGAACTTTCTGCTTCCAAGTGGCTC
AATCCTGACCTTGAACTACCTGACACCAGGTGAATGTCAGGAACTCCCAAACCACTAGTG
CCAAAGGGTCACATTGAAAAGTTCAGAATAGTTCTTTTATCTGTCAGACTGTAATAATTC
CCCCCCCCCACCCTCGTATCAGTGTTTTTGCACTTGGAAATATTTAAGGGTACTGTGTTT
TTGCCTTTTTAAATGATAACTATTACTTTCTTGTAAAATGGAATATAATTGTTGCAGAGA
GGAACAAAACTGGATAAAGAAAATGTAAAGTGTTGATTGGTTACATAAAATTTTTGTCAC
GTAAATGTATCAGGGGAGCTTCCACTTAGCATATTCACACACATTTGTCAATGATTAAGA
CTTGCTTATATTTTGCTTTATAGCAGTAGTCATTAGCATGTTGTAACTGCCTTATGTAAA
TAAAAAGGCTATTTATTAAGTTTTCCAATACTATTTATTAATCTGTATGTGTTTTAAAAT
AAAATAACTTAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               468-582, no strand, RNAz p=0.684034

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               468-582, no strand, RNAz p=0.684034

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1272, gnl|bosTau2|chr9 (24966932-24965668)
               

               
               1-1272, gnl|Hg17|chr15 (20595991-20594731)
               

               
               1-1272, gnl|Mm7|chr7 (52217473-52216020)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1272, gnl|bosTau2|chr9 (24966932-24965668)
               

               
               1-1272, gnl|Hg17|chr15 (20595991-20594731)
               

               
               1-1272, gnl|Mm7|chr7 (52217473-52216020)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               spc (0.566829)
               

               
               fco (0.314416)
               

               
               hyp (0.285673)
               

               
               cbe (0.239234)
               

               
               aor (0.195274)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.566829)
               

               
               fco (0.314416)
               

               
               hyp (0.285673)
               

               
               cbe (0.239234)
               

               
               aor (0.195274)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)

	1-1272, gnl\|bosTau2\|chr9 (24966932-24965668)
	1-1272, gnl\|Hg17\|chr15 (20595991-20594731)
	1-1272, gnl\|Mm7\|chr7 (52217473-52216020)

	spc (0.566829)
	fco (0.314416)
	hyp (0.285673)
	cbe (0.239234)
	aor (0.195274)
	ova (0.129132)
	sug (0.127291)
	ebs (0.118301)