Ss1.1-Pig4-TMW8037N13.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGTCGCGGCGGCACCGGTGGGAACGGGGTGCGGGGCTCAGAGTGCGGCCGGCGGGCGGAC GGTCGGCGGTGATCTCGCACCTGCGGCGGCGGGGGACGTAGGCTTTGTCGGTTGAGTGCG CGTCCCCTCAGTCCACGAGCGGCTTCTCAGCCTTTCTCCTGCCCGTCGGAGCCCCGGGGC CGGGACCCGTTCAGCCGGCGTCACCATGACCAAGGCCGGTAGCAAGGGCGGGAACCTCCG CGACAAGCTTGACGGCAACGAGCTGGACCTGAGCCTCAGCGACCTGAATGAGGTCCCTGT CAAGGAGCTGGCTGCCCTCTCCAAGGCCACCATACTGGATCTGTCCTGCAATAAACTGAC TACTCTACCGTCGGAGTTCTGTGGCCTCACACACCTGGTGAAGCTGGACCTGAGTAAGAA CAAGCTGCGGCAGCTGCCGGCGGACTTTGGCCGCCTGGTCAACCTCCAGCACCTGGACCT CCTCAACAACAGGCTGGTCACCCTGCCTGTCAGCTTTGCTCAGCTCAAGAGCCTCAAGTG GCTGGATCTGAAGGATAACCCCCTGGATCCCGTCCTGGCCAAGGTGGCAGGGGATTGCCT GGATGAGAAGCAGTGCAAGCAGTGCGCCAACAAGGTGCTGCAGCACATGAAGGCTGTGCA GGCGGATCAGGAGCGAGAGAGGCAGCGGCGGCTGGAAATAGACAGAGAGGCTGAGAAGAA GTGGGAAGCCAAGCAGCGAGCTAAGGAGGCTCAGGAGCGGGAACTGCGGAAGCGGGAGAA GGCGGAAGAGAAGGAGCGCCGGAGAAAGGAGTATGACGCCCTCAAAGCGGCCAAGCGAGA GCAGGAGAAGAAACCGAAGAAGGAAACAAATCAGGCCCCGAAATCAAAGTCCGGCTCTCG CCCCCGTAAGCCGCCACCCCGGAAACACACTCGGTCCTGGGCTGTGCTGAAGCTGCTGCT GCTGCTGCTGCTGTGTGTGGCTGGCGGGCTGGTTGCTTGTCGGGTGACAGAGCTGCAGCA GCAGCCCCTGTGCACCAGCGTGAACACCATCTACGACAACGCAGTCCGGGGCCTGCGCAG CCACGACATCGTCCAGTGGGTCCTGCAGACCGATTCTCAGCAGTGAGCTTGTCCTCAACA ACTGCTGCCTCCCAGCCTTGGAGCTTGGATTCCTATGGAATTGGGTTCTGCTGGACACAA CCTCTTTTTAGTGTCAGACCTACCTGCCATCGTCAAATGGCTGCCGTTTGGTACTTGAGA CCTCCTCTTTGTAAGACTTCTTTGTTCCTTAGTCAGGGTTCCCTGGCGGAATAAGGAGAG GCAGGAGGTGGGGACAGTTACCTGCATGCTTACAAGAATAGGCTTGGGTTGGGAGAGGAA AAACCATAGCCTTTTCTAGTTGTTACACAAAGCTGCGTAAGGGCAAGACTCATTTCTACT AAAGGTCAGCTGTCACTACATTTATACTTTTGTATGTCACCAACCCTTTCTTTCATTCCT CCCTGGGGAGCCAGGGCCGATCAGGAGGCAGTGTGTTACTGGGGACGAGGGGAGCACCAT ACTCAGCAAATCTAACCTAAATTGGGGGGGAGGGACAAACCTATTTTTTAAAGGACCTCA GACATTCAGATATTTTAATGATCATACAAAATCTCAGGCTGTGAAAGGAACTCGAAGACC ATCCATTCCAATAGAACCCTTGTCGGTGGGGAACCTGCACCTTCCATGACTTGCCTACCA TCTCCCAGCTAGTTTGAGGCAGACCTGGATTCCCACCCTGGTATCTTTCTTTCCATCATT TCGCCTCCTTTATAATGTCCCGAGACCACACAGCTTAACAGCAGAATTGAGTGTCTCTTG GCTGAAATACAGATAGTTTCATGGACGCCAGATTCACGACCCACAAATAGGAATCTCGCA GCCATGAGGGTCTGGGGCAGCTCCTGCAAAGTCCTGCCACAATTTATGTGGCTTCTATCA AGTGGGGATGCTCCAGGCCCTTTGCCTCAATTCAAGAGCATTAACTCCCTGATTGTCAGT AAACAAGACGACGGACCCTTGCAAAGCCCCATTTTCCATGACAGCTCTGTTACCTAATTG GTGTGACCACATACCTCAGAGGCAAACTGAAAACTCAAGCTTCATAGAGACCGAGGTTTA GAATTGTTTGATTCTAGTCGTACCTACGCCTGTACAATGAAGGCAAACAAGGAGCATCAT GGAGTTGAGAGGTGGTGCATTAATGGCTGCTGTGGCACCAATAGGGGCAGAACTGTCCAT TCTCGTGTCTGCCAGATCCAGCGTTTTTCTTGCTCTCTGGCCTCCTTGCCTCTTTTCACA ACAGCTGGACGAAGGGATCAGCAGTGGCTGTCATGGTGCTCATTCACGGAAAACTCCCAA TTGCAAGCTCCTTGCCTCCGCCCAGGGAGAGCAAGACCCTGTCGTGTTCAGGGACAGAGT GGGCTCCAGCTTTTCAGCACTAGTGGCCCACGGAGAGGACGGACTGTCCTAATGATGGAA GGATGGACTTGTTTTCTCCCTCAAGGGTAGCTCTGCTGTGTAGACCCACACCTTACTCAG AATCACTACACATTCCTTAGTCTTCCTCCAAGCTCCAGAGCCATCGATACAAATGCTTTA TTGAAACTAAACGCATAGTACACATCATGGGGATTAAGACAGAAGTCAGCATAGCGATCG GGCCCCCGTTCCTTGGCTGGCGGAGGCAGCTTCGGCGGGTGCGAGGCAGGCCAGCGCACA CCCAGCCTCGTCTAGCAACCTGCCCAGGGCAGTTCGCTCGTGACCTCGAGATTTGATGTT GAGGTTCTTTTGGATTTCTGCAATTATTAAATACGTGTCTGAGTGGTTAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGTCGCGGCGGCACCGGTGGGAACGGGGTGCGGGGCTCAGAGTGCGGCCGGCGGGCGGAC GGTCGGCGGTGATCTCGCACCTGCGGCGGCGGGGGACGTAGGCTTTGTCGGTTGAGTGCG CGTCCCCTCAGTCCACGAGCGGCTTCTCAGCCTTTCTCCTGCCCGTCGGAGCCCCGGGGC CGGGACCCGTTCAGCCGGCGTCACCATGACCAAGGCCGGTAGCAAGGGCGGGAACCTCCG CGACAAGCTTGACGGCAACGAGCTGGACCTGAGCCTCAGCGACCTGAATGAGGTCCCTGT CAAGGAGCTGGCTGCCCTCTCCAAGGCCACCATACTGGATCTGTCCTGCAATAAACTGAC TACTCTACCGTCGGAGTTCTGTGGCCTCACACACCTGGTGAAGCTGGACCTGAGTAAGAA CAAGCTGCGGCAGCTGCCGGCGGACTTTGGCCGCCTGGTCAACCTCCAGCACCTGGACCT CCTCAACAACAGGCTGGTCACCCTGCCTGTCAGCTTTGCTCAGCTCAAGAGCCTCAAGTG GCTGGATCTGAAGGATAACCCCCTGGATCCCGTCCTGGCCAAGGTGGCAGGGGATTGCCT GGATGAGAAGCAGTGCAAGCAGTGCGCCAACAAGGTGCTGCAGCACATGAAGGCTGTGCA GGCGGATCAGGAGCGAGAGAGGCAGCGGCGGCTGGAAATAGACAGAGAGGCTGAGAAGAA GTGGGAAGCCAAGCAGCGAGCTAAGGAGGCTCAGGAGCGGGAACTGCGGAAGCGGGAGAA GGCGGAAGAGAAGGAGCGCCGGAGAAAGGAGTATGACGCCCTCAAAGCGGCCAAGCGAGA GCAGGAGAAGAAACCGAAGAAGGAAACAAATCAGGCCCCGAAATCAAAGTCCGGCTCTCG CCCCCGTAAGCCGCCACCCCGGAAACACACTCGGTCCTGGGCTGTGCTGAAGCTGCTGCT GCTGCTGCTGCTGTGTGTGGCTGGCGGGCTGGTTGCTTGTCGGGTGACAGAGCTGCAGCA GCAGCCCCTGTGCACCAGCGTGAACACCATCTACGACAACGCAGTCCGGGGCCTGCGCAG CCACGACATCGTCCAGTGGGTCCTGCAGACCGATTCTCAGCAGTGAGCTTGTCCTCAACA ACTGCTGCCTCCCAGCCTTGGAGCTTGGATTCCTATGGAATTGGGTTCTGCTGGACACAA CCTCTTTTTAGTGTCAGACCTACCTGCCATCGTCAAATGGCTGCCGTTTGGTACTTGAGA CCTCCTCTTTGTAAGACTTCTTTGTTCCTTAGTCAGGGTTCCCTGGCGGAATAAGGAGAG GCAGGAGGTGGGGACAGTTACCTGCATGCTTACAAGAATAGGCTTGGGTTGGGAGAGGAA AAACCATAGCCTTTTCTAGTTGTTACACAAAGCTGCGTAAGGGCAAGACTCATTTCTACT AAAGGTCAGCTGTCACTACATTTATACTTTTGTATGTCACCAACCCTTTCTTTCATTCCT CCCTGGGGAGCCAGGGCCGATCAGGAGGCAGTGTGTTACTGGGGACGAGGGGAGCACCAT ACTCAGCAAATCTAACCTAAATTGGGGGGGAGGGACAAACCTATTTTTTAAAGGACCTCA GACATTCAGATATTTTAATGATCATACAAAATCTCAGGCTGTGAAAGGAACTCGAAGACC ATCCATTCCAATAGAACCCTTGTCGGTGGGGAACCTGCACCTTCCATGACTTGCCTACCA TCTCCCAGCTAGTTTGAGGCAGACCTGGATTCCCACCCTGGTATCTTTCTTTCCATCATT TCGCCTCCTTTATAATGTCCCGAGACCACACAGCTTAACAGCAGAATTGAGTGTCTCTTG GCTGAAATACAGATAGTTTCATGGACGCCAGATTCACGACCCACAAATAGGAATCTCGCA GCCATGAGGGTCTGGGGCAGCTCCTGCAAAGTCCTGCCACAATTTATGTGGCTTCTATCA AGTGGGGATGCTCCAGGCCCTTTGCCTCAATTCAAGAGCATTAACTCCCTGATTGTCAGT AAACAAGACGACGGACCCTTGCAAAGCCCCATTTTCCATGACAGCTCTGTTACCTAATTG GTGTGACCACATACCTCAGAGGCAAACTGAAAACTCAAGCTTCATAGAGACCGAGGTTTA GAATTGTTTGATTCTAGTCGTACCTACGCCTGTACAATGAAGGCAAACAAGGAGCATCAT GGAGTTGAGAGGTGGTGCATTAATGGCTGCTGTGGCACCAATAGGGGCAGAACTGTCCAT TCTCGTGTCTGCCAGATCCAGCGTTTTTCTTGCTCTCTGGCCTCCTTGCCTCTTTTCACA ACAGCTGGACGAAGGGATCAGCAGTGGCTGTCATGGTGCTCATTCACGGAAAACTCCCAA TTGCAAGCTCCTTGCCTCCGCCCAGGGAGAGCAAGACCCTGTCGTGTTCAGGGACAGAGT GGGCTCCAGCTTTTCAGCACTAGTGGCCCACGGAGAGGACGGACTGTCCTAATGATGGAA GGATGGACTTGTTTTCTCCCTCAAGGGTAGCTCTGCTGTGTAGACCCACACCTTACTCAG AATCACTACACATTCCTTAGTCTTCCTCCAAGCTCCAGAGCCATCGATACAAATGCTTTA TTGAAACTAAACGCATAGTACACATCATGGGGATTAAGACAGAAGTCAGCATAGCGATCG GGCCCCCGTTCCTTGGCTGGCGGAGGCAGCTTCGGCGGGTGCGAGGCAGGCCAGCGCACA CCCAGCCTCGTCTAGCAACCTGCCCAGGGCAGTTCGCTCGTGACCTCGAGATTTGATGTT GAGGTTCTTTTGGATTTCTGCAATTATTAAATACGTGTCTGAGTGGTTAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 921-1077, - strand, RNAz p=0.848461 | |
| 1198-1422, - strand, RNAz p=0.998254 | |
| 1967-2084, - strand, RNAz p=0.894157 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 921-1077, - strand, RNAz p=0.848461 | |
| 1198-1422, - strand, RNAz p=0.998254 | |
| 1967-2084, - strand, RNAz p=0.894157 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 240-531, gnl|bosTau2|chr17 (30351852-30352127) | |
| 240-531, gnl|Hg17|chr6 (64208650-64209259) | |
| 706-881, gnl|bosTau2|chr19 (29009836-29010011) | |
| 706-881, gnl|canFam2|chr9 (29678323-29678464) | |
| 706-881, gnl|canFam2|chr9 (29678497-29678354) | |
| 706-881, gnl|dasNov1|scaffold_6172 (91866-91725) | |
| 706-881, gnl|dasNov1|scaffold_6172 (91692-91835) | |
| 706-881, gnl|echTel1|scaffold_301208 (16955-16820) | |
| 706-881, gnl|echTel1|scaffold_301208 (16787-16930) | |
| 706-881, gnl|galGal2|chr3_random (1087766-1087625) | |
| 706-881, gnl|hg17|chr17 (45817480-45817621) | |
| 706-881, gnl|Hg17|chr17 (45817653-45817478) | |
| 706-881, gnl|hg17|chr19 (9139912-9140048) | |
| 706-881, gnl|hg17|chr6 (64209434-64209573) | |
| 706-881, gnl|loxAfr1|scaffold_14582 (30547-30436) | |
| 706-881, gnl|loxAfr1|scaffold_14582 (30421-30524) | |
| 706-881, gnl|mm7|chr11 (94750432-94750291) | |
| 706-881, gnl|mm7|chr11 (94750258-94750401) | |
| 706-881, gnl|Mm7|chr11 (94750257-94750432) | |
| 706-881, gnl|monDom2|scaffold_230 (113633-113777) | |
| 706-881, gnl|monDom2|scaffold_7 (12913420-12913569) | |
| 706-881, gnl|oryCun1|scaffold_142187 (7297-7417) | |
| 706-881, gnl|oryCun1|scaffold_142187 (7447-7307) | |
| 706-881, gnl|oryCun1|scaffold_172145 (23325-23433) | |
| 706-881, gnl|panTro1|chr19_random (31454424-31454565) | |
| 706-881, gnl|panTro1|chr20 (9503467-9503603) | |
| 706-881, gnl|panTro1|chr5 (64950252-64950394) | |
| 706-881, gnl|rheMac2|chr16 (34631847-34631988) | |
| 706-881, gnl|rheMac2|chr4 (59863265-59863410) | |
| 706-881, gnl|rheMac2|chr8 (96233821-96233948) | |
| 706-881, gnl|rn3|chr10 (83289887-83289746) | |
| 706-881, gnl|rn3|chr10 (83289713-83289856) | |
| 706-881, gnl|xenTro1|scaffold_485 (672739-672611) | |
| 882-2166, gnl|bosTau2|chr19 (29011241-29012506) | |
| 882-2166, gnl|Hg17|chr17 (45815595-45814283) | |
| 882-2166, gnl|Mm7|chr11 (94752333-94753577) | |
| 1486-2046, gnl|bosTau2|chr17 (30351175-30350654) | |
| 1486-2046, gnl|Hg17|chr12 (109236913-109237416) | |
| 1486-2046, gnl|Mm7|chr11 (94752939-94753483) | |
| 2215-2867, gnl|bosTau2|chr19 (29012515-29013154) | |
| 2215-2867, gnl|Hg17|chr17 (45814224-45813598) | |
| 2215-2867, gnl|Mm7|chr11 (94753586-94754254) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 240-531, gnl|bosTau2|chr17 (30351852-30352127) | |
| 240-531, gnl|Hg17|chr6 (64208650-64209259) | |
| 706-881, gnl|bosTau2|chr19 (29009836-29010011) | |
| 706-881, gnl|canFam2|chr9 (29678323-29678464) | |
| 706-881, gnl|canFam2|chr9 (29678497-29678354) | |
| 706-881, gnl|dasNov1|scaffold_6172 (91866-91725) | |
| 706-881, gnl|dasNov1|scaffold_6172 (91692-91835) | |
| 706-881, gnl|echTel1|scaffold_301208 (16955-16820) | |
| 706-881, gnl|echTel1|scaffold_301208 (16787-16930) | |
| 706-881, gnl|galGal2|chr3_random (1087766-1087625) | |
| 706-881, gnl|hg17|chr17 (45817480-45817621) | |
| 706-881, gnl|Hg17|chr17 (45817653-45817478) | |
| 706-881, gnl|hg17|chr19 (9139912-9140048) | |
| 706-881, gnl|hg17|chr6 (64209434-64209573) | |
| 706-881, gnl|loxAfr1|scaffold_14582 (30547-30436) | |
| 706-881, gnl|loxAfr1|scaffold_14582 (30421-30524) | |
| 706-881, gnl|mm7|chr11 (94750432-94750291) | |
| 706-881, gnl|mm7|chr11 (94750258-94750401) | |
| 706-881, gnl|Mm7|chr11 (94750257-94750432) | |
| 706-881, gnl|monDom2|scaffold_230 (113633-113777) | |
| 706-881, gnl|monDom2|scaffold_7 (12913420-12913569) | |
| 706-881, gnl|oryCun1|scaffold_142187 (7297-7417) | |
| 706-881, gnl|oryCun1|scaffold_142187 (7447-7307) | |
| 706-881, gnl|oryCun1|scaffold_172145 (23325-23433) | |
| 706-881, gnl|panTro1|chr19_random (31454424-31454565) | |
| 706-881, gnl|panTro1|chr20 (9503467-9503603) | |
| 706-881, gnl|panTro1|chr5 (64950252-64950394) | |
| 706-881, gnl|rheMac2|chr16 (34631847-34631988) | |
| 706-881, gnl|rheMac2|chr4 (59863265-59863410) | |
| 706-881, gnl|rheMac2|chr8 (96233821-96233948) | |
| 706-881, gnl|rn3|chr10 (83289887-83289746) | |
| 706-881, gnl|rn3|chr10 (83289713-83289856) | |
| 706-881, gnl|xenTro1|scaffold_485 (672739-672611) | |
| 882-2166, gnl|bosTau2|chr19 (29011241-29012506) | |
| 882-2166, gnl|Hg17|chr17 (45815595-45814283) | |
| 882-2166, gnl|Mm7|chr11 (94752333-94753577) | |
| 1486-2046, gnl|bosTau2|chr17 (30351175-30350654) | |
| 1486-2046, gnl|Hg17|chr12 (109236913-109237416) | |
| 1486-2046, gnl|Mm7|chr11 (94752939-94753483) | |
| 2215-2867, gnl|bosTau2|chr19 (29012515-29013154) | |
| 2215-2867, gnl|Hg17|chr17 (45814224-45813598) | |
| 2215-2867, gnl|Mm7|chr11 (94753586-94754254) |
| Expressed library(ies): 31 entry(ies) | More info |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
| fhi (0.508733) | |
| amn (0.417711) | |
| elu (0.385356) | |
| sto (0.359648) | |
| csp (0.322373) | |
| nca (0.273748) | |
| eep (0.245128) | |
| ece (0.229305) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| ill (0.175593) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cut (0.169924) | |
| cje (0.165235) | |
| cli (0.152812) | |
| fat (0.147427) | |
| liv (0.146284) | |
| lin (0.145603) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| che (0.136314) | |
| ese (0.126502) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.508733) | |
| amn (0.417711) | |
| elu (0.385356) | |
| sto (0.359648) | |
| csp (0.322373) | |
| nca (0.273748) | |
| eep (0.245128) | |
| ece (0.229305) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| ill (0.175593) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cut (0.169924) | |
| cje (0.165235) | |
| cli (0.152812) | |
| fat (0.147427) | |
| liv (0.146284) | |
| lin (0.145603) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| che (0.136314) | |
| ese (0.126502) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| jej (0.0989218) |