Non-Coding RNA Search

Ss1.1-Pig4-TMW8037N20.5

Sequence:


               
               GCTACATCCAGCTTGGCCAGAAGGAAGGGGCAAAACTTCTCTGTGGCGGGGAGCGTTTTG
GAGAGCGAGGCTTCTTCATCAAGCCCACGGTCTTTGGTGGAGTGCAAGATGACATGAGGA
TCGCCAAGGAGGAGATCTTTGGGCCTGTGCAGCCTCTGTTCAAGTTCAAGAGGATCGAGG
AGGTGATCGAGAGGGCCAACAACACTAGGTATGGCTTGGCGGCTGCCGTGTTCACTCAGG
ACCTGGACAAAGCCATGTACTTCACACAGGCCCTCCAAGCTGGGACAGTGTGGGTGAACA
CCTACAACATTGTCACCTGCCACACACCTTTCGGAGGCTTTAAGGAATCTGGCAATGGAA
GGGAGCTGGGGGAGGATGGGCTTAAGGCCTACACAGAGGTGAAGACAGTCACCATCAAGG
TTCCTCAGAAGGACTCCTAAGGACGGCTACCAAGCCGAGGATGCCACAACCATCTGCAAG
TGGTTGCCAAGTATTTTTTTTTAAGCCGTGGACCCCCCCTTTATTTGTTCCAGATGAACT
CTTAGAGGGAACCTCAACAAATGAAGCAGTTAAAATGGGAGCTGTTCTAGTTAAAGCAGG
ATGGGGCCTGGGCCCAGAGGCTTATCCACCTGCACCCCAACCCTGTTGATGGCCCTGTGT
TACTTCCACGACACCTTAAGAGTCTCTGGAATACAGATGAGAAGCCAATGATCAGACAGT
GGCTTTTCATTCTTCCAGCTGATCCAAGGACTTCCTGGTGGATTAATTAGTGGTTAGACA
CTTCAGAAACGGGATTAGGGCACATTAGGATTTTTAAACTAGGCCCTATGTCTTGGCCCC
ATTCCTTAGTAACCTACCCTAAAAGTCATGGGTGCTTTCCTTTTTCTAAGTACCAGTTGC
AAACTGATTTGCCTGCTTGCATTGCTTCATTTTGCTACTGATTCTCCTTAATTCAAGGGA
AGGAGTGGACAGAAAATGCATTTATATAATTGTTCCTTTAAAATACACTCAGCCCTAATG
TCATCAGTTAATGAGTGGATGAACAAAATGTTGCCATGGAATATTTCTTGTACTGTTCAA
CCTTAAAAAGGAAAAAAAAGTACTGACACATGCTACAGCATGGATGAACCTTGAAACCAT
TATGTTAAATGAAAGAAGCCAGATATACAAGGCCATGTATTGTATGATTCCATTTATATG
AAATAACCCGAATAAGCAAATCCGTTGAGACAGAAAGTGTATTAGTGGTTGCCAGGGGCT
GGGGAAGGAGAGAATGGGGAATAACTGCTAATAGGTAGAGAATTTCTTTTGGGGAGGTTT
TGAAATGCTGTGCAATTAGTGATTGTTGTATACTTCTGCGACTATACTAAAATGCACTGA
AGTAATACTTTAAAGGGGTGAATTTTATGATATGTGAGTTAATTACAATGAAAAATTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTACATCCAGCTTGGCCAGAAGGAAGGGGCAAAACTTCTCTGTGGCGGGGAGCGTTTTG
GAGAGCGAGGCTTCTTCATCAAGCCCACGGTCTTTGGTGGAGTGCAAGATGACATGAGGA
TCGCCAAGGAGGAGATCTTTGGGCCTGTGCAGCCTCTGTTCAAGTTCAAGAGGATCGAGG
AGGTGATCGAGAGGGCCAACAACACTAGGTATGGCTTGGCGGCTGCCGTGTTCACTCAGG
ACCTGGACAAAGCCATGTACTTCACACAGGCCCTCCAAGCTGGGACAGTGTGGGTGAACA
CCTACAACATTGTCACCTGCCACACACCTTTCGGAGGCTTTAAGGAATCTGGCAATGGAA
GGGAGCTGGGGGAGGATGGGCTTAAGGCCTACACAGAGGTGAAGACAGTCACCATCAAGG
TTCCTCAGAAGGACTCCTAAGGACGGCTACCAAGCCGAGGATGCCACAACCATCTGCAAG
TGGTTGCCAAGTATTTTTTTTTAAGCCGTGGACCCCCCCTTTATTTGTTCCAGATGAACT
CTTAGAGGGAACCTCAACAAATGAAGCAGTTAAAATGGGAGCTGTTCTAGTTAAAGCAGG
ATGGGGCCTGGGCCCAGAGGCTTATCCACCTGCACCCCAACCCTGTTGATGGCCCTGTGT
TACTTCCACGACACCTTAAGAGTCTCTGGAATACAGATGAGAAGCCAATGATCAGACAGT
GGCTTTTCATTCTTCCAGCTGATCCAAGGACTTCCTGGTGGATTAATTAGTGGTTAGACA
CTTCAGAAACGGGATTAGGGCACATTAGGATTTTTAAACTAGGCCCTATGTCTTGGCCCC
ATTCCTTAGTAACCTACCCTAAAAGTCATGGGTGCTTTCCTTTTTCTAAGTACCAGTTGC
AAACTGATTTGCCTGCTTGCATTGCTTCATTTTGCTACTGATTCTCCTTAATTCAAGGGA
AGGAGTGGACAGAAAATGCATTTATATAATTGTTCCTTTAAAATACACTCAGCCCTAATG
TCATCAGTTAATGAGTGGATGAACAAAATGTTGCCATGGAATATTTCTTGTACTGTTCAA
CCTTAAAAAGGAAAAAAAAGTACTGACACATGCTACAGCATGGATGAACCTTGAAACCAT
TATGTTAAATGAAAGAAGCCAGATATACAAGGCCATGTATTGTATGATTCCATTTATATG
AAATAACCCGAATAAGCAAATCCGTTGAGACAGAAAGTGTATTAGTGGTTGCCAGGGGCT
GGGGAAGGAGAGAATGGGGAATAACTGCTAATAGGTAGAGAATTTCTTTTGGGGAGGTTT
TGAAATGCTGTGCAATTAGTGATTGTTGTATACTTCTGCGACTATACTAAAATGCACTGA
AGTAATACTTTAAAGGGGTGAATTTTATGATATGTGAGTTAATTACAATGAAAAATTAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1001-1118, - strand, RNAz p=0.509772

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1001-1118, - strand, RNAz p=0.509772

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1000-1440, gnl|bosTau2|chrX (33672465-33672913)
               

               
               1000-1440, gnl|Hg17|chrX (114546965-114546551)
               


               
               1001-1438, gnl|bosTau2|chrX (26288978-26288535)
               


               
               1098-1435, gnl|bosTau2|chrX (20654682-20655026)
               

               
               1098-1435, gnl|Mm7|chrX (95905884-95905553)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1000-1440, gnl|bosTau2|chrX (33672465-33672913)
               

               
               1000-1440, gnl|Hg17|chrX (114546965-114546551)
               


               
               1001-1438, gnl|bosTau2|chrX (26288978-26288535)
               


               
               1098-1435, gnl|bosTau2|chrX (20654682-20655026)
               

               
               1098-1435, gnl|Mm7|chrX (95905884-95905553)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               cki (0.826173)
               

               
               sin (0.524843)
               

               
               fcc (0.39557)
               

               
               kid (0.389206)
               

               
               aor (0.195274)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               jej (0.0989218)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.826173)
               

               
               sin (0.524843)
               

               
               fcc (0.39557)
               

               
               kid (0.389206)
               

               
               aor (0.195274)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               jej (0.0989218)

	1000-1440, gnl\|bosTau2\|chrX (33672465-33672913)
	1000-1440, gnl\|Hg17\|chrX (114546965-114546551)

	1001-1438, gnl\|bosTau2\|chrX (26288978-26288535)

	1098-1435, gnl\|bosTau2\|chrX (20654682-20655026)
	1098-1435, gnl\|Mm7\|chrX (95905884-95905553)

	cki (0.826173)
	sin (0.524843)
	fcc (0.39557)
	kid (0.389206)
	aor (0.195274)
	ill (0.175593)
	duo (0.172801)
	che (0.136314)
	pla (0.133672)
	thg (0.126791)
	bla (0.124347)
	jej (0.0989218)