Ss1.1-Pig4-TMW8037N24.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAACGGGGAGCGAACCCAGGCCGCAGCTTTTAGGTCCACCGCATGGCAGAAATGGCAGA TTTTGGGATCTCGGCTGGCCAGTCGGTGGCAGTGGTCTGGGATAAGTCATCCCCGGTGGA GGCCCTGAAAGATCTGGTGGACAAGCTTCAAGCGTTAACTGGCGACAAGGGCCAAGTGTC CGTGGAAAACATTAACCAGCTGCTGCAGTCTGCCCACAAAGAATCTAGCTTTGACGTTGT CTTGTCGGGTGTAATTCCTGGAAGCACCACTGCACACAGTGCTGAGATTTTGGCCGAGAT GGCCCGGATCCTTCGGCCTGGTGGATGTCTTTTTCTCAAAGAGCCAGTAGAGACAGCTGT AGTTAACAACAGCAAAGTGAAGACAGCGTCTAAGCTGTGTTCAGCCCTGACTCTTTCTGG TCTTGTGGAAGTAAAAGAGCTGCAGCGCGAGTCCTTGAGCCCCGAGGAGACTGGATCTGT CCAGGAACATCTGGGTTACCGCAGCGACAGCCTCCTCTTTGTGCGGATCACAGGCAGGAA GCCCAACTTTGAAGTGGGTTCTTCTAGTCAGCTTAAGCTTCCTGTTGCCAAGAAGTCTTC AGGGAAGCCTGCTGTGGACCCTGCAGCTGCCAAGCTCTGGACCCTCTCGGCCAACGATAT GGAGGATGAGAGCGTGGATCTCATCGACTCGGATGAACTGCTGGATCCGGAAGATCTGAA GAAGCCAGACCCAGCTTCCTTGCGGGCTGCCCCATGCGGGGAAGGGAAAAAGAGAAAGGC CTGCAAGAACTGCACCTGTGGCCTCGCAGAAGAACTGGAAAAAGAGAAGTCGAGGGACCA GATGAGCTCCCAGCCCAAGTCAGCTTGCGGAAACTGCTACCTGGGTGATGCCTTCCGCTG TGCCAGCTGCCCCTACCTTGGGATGCCAGCCTTCAAACCCGGGGAGAAGGTGCTCCTGAG CAACAGCAACCTCAACGACGCCTAGGCAGGCCGGCCTGGGACACCCCTGCTCCTCGCCAG CTCCTGCCCCTCGATCCTCCCGCTGCCTCTGGATGGGCTCCCTGTCTCGGGTCCATCGGG TGGTGAAGCTGGCTGGGGCACAGTGGTGCAGGTGCTGCTCTAGATCAAGACCACGGTATC CGGGCCCCGCTACCCTGAGTGGGCACCTCCTTCATCCAGTGTTAGGCAAACGGAGTGTGT CCCCAAGAGGCCCTCTCCCGATGTCCAAATGGTGACAGTAACCATCTCTGAGCCCGCCCC TGTGGGCCAGTGCTTCAGGTTGTTTTCCAGAGGTGGTGGTTTATTCATATTGTTCTTGGT GACAGGAGGCAAGTGTCCCATGGCCACCTCAGAGCACCGGGGGAATCACTCATCGGTTGC TGTGATCACATCCAGCATCCCTCCGCCCCCTCCACTCCTACCCTTGTTTTACTGTGTCCA TCTGCGTCCTGTTGTCATTTCCGTTACTCTCCAGGTATTAAACTTATGTACTTATGCATA TTCACTGAAGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAACGGGGAGCGAACCCAGGCCGCAGCTTTTAGGTCCACCGCATGGCAGAAATGGCAGA TTTTGGGATCTCGGCTGGCCAGTCGGTGGCAGTGGTCTGGGATAAGTCATCCCCGGTGGA GGCCCTGAAAGATCTGGTGGACAAGCTTCAAGCGTTAACTGGCGACAAGGGCCAAGTGTC CGTGGAAAACATTAACCAGCTGCTGCAGTCTGCCCACAAAGAATCTAGCTTTGACGTTGT CTTGTCGGGTGTAATTCCTGGAAGCACCACTGCACACAGTGCTGAGATTTTGGCCGAGAT GGCCCGGATCCTTCGGCCTGGTGGATGTCTTTTTCTCAAAGAGCCAGTAGAGACAGCTGT AGTTAACAACAGCAAAGTGAAGACAGCGTCTAAGCTGTGTTCAGCCCTGACTCTTTCTGG TCTTGTGGAAGTAAAAGAGCTGCAGCGCGAGTCCTTGAGCCCCGAGGAGACTGGATCTGT CCAGGAACATCTGGGTTACCGCAGCGACAGCCTCCTCTTTGTGCGGATCACAGGCAGGAA GCCCAACTTTGAAGTGGGTTCTTCTAGTCAGCTTAAGCTTCCTGTTGCCAAGAAGTCTTC AGGGAAGCCTGCTGTGGACCCTGCAGCTGCCAAGCTCTGGACCCTCTCGGCCAACGATAT GGAGGATGAGAGCGTGGATCTCATCGACTCGGATGAACTGCTGGATCCGGAAGATCTGAA GAAGCCAGACCCAGCTTCCTTGCGGGCTGCCCCATGCGGGGAAGGGAAAAAGAGAAAGGC CTGCAAGAACTGCACCTGTGGCCTCGCAGAAGAACTGGAAAAAGAGAAGTCGAGGGACCA GATGAGCTCCCAGCCCAAGTCAGCTTGCGGAAACTGCTACCTGGGTGATGCCTTCCGCTG TGCCAGCTGCCCCTACCTTGGGATGCCAGCCTTCAAACCCGGGGAGAAGGTGCTCCTGAG CAACAGCAACCTCAACGACGCCTAGGCAGGCCGGCCTGGGACACCCCTGCTCCTCGCCAG CTCCTGCCCCTCGATCCTCCCGCTGCCTCTGGATGGGCTCCCTGTCTCGGGTCCATCGGG TGGTGAAGCTGGCTGGGGCACAGTGGTGCAGGTGCTGCTCTAGATCAAGACCACGGTATC CGGGCCCCGCTACCCTGAGTGGGCACCTCCTTCATCCAGTGTTAGGCAAACGGAGTGTGT CCCCAAGAGGCCCTCTCCCGATGTCCAAATGGTGACAGTAACCATCTCTGAGCCCGCCCC TGTGGGCCAGTGCTTCAGGTTGTTTTCCAGAGGTGGTGGTTTATTCATATTGTTCTTGGT GACAGGAGGCAAGTGTCCCATGGCCACCTCAGAGCACCGGGGGAATCACTCATCGGTTGC TGTGATCACATCCAGCATCCCTCCGCCCCCTCCACTCCTACCCTTGTTTTACTGTGTCCA TCTGCGTCCTGTTGTCATTTCCGTTACTCTCCAGGTATTAAACTTATGTACTTATGCATA TTCACTGAAGAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 59-178, + strand, RNAz p=0.552791 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 59-178, + strand, RNAz p=0.552791 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of CR605182, + |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 26-209, gnl|bosTau2|chr18 (21497563-21497746) | |
| 26-209, gnl|canFam2|chr2 (61862944-61862779) | |
| 26-209, gnl|canFam2|chr2 (61862757-61862938) | |
| 26-209, gnl|echTel1|scaffold_280747 (32826-32983) | |
| 26-209, gnl|echTel1|scaffold_280747 (33006-32826) | |
| 26-209, gnl|fr1|chrUn (201361571-201361406) | |
| 26-209, gnl|fr1|chrUn (201361407-201361565) | |
| 26-209, gnl|galGal2|chr11 (541357-541192) | |
| 26-209, gnl|hg17|chr15 (66913169-66913353) | |
| 26-209, gnl|hg17|chr16 (56032180-56032345) | |
| 26-209, gnl|Hg17|chr16 (56032374-56032185) | |
| 26-209, gnl|loxAfr1|scaffold_11869 (70447-70612) | |
| 26-209, gnl|loxAfr1|scaffold_11869 (70635-70453) | |
| 26-209, gnl|mm7|chr8 (93421554-93421719) | |
| 26-209, gnl|mm7|chr8 (93421740-93421560) | |
| 26-209, gnl|Mm7|chr8 (93421743-93421559) | |
| 26-209, gnl|monDom2|scaffold_35 (24450952-24451117) | |
| 26-209, gnl|monDom2|scaffold_35 (24451139-24450958) | |
| 26-209, gnl|oryCun1|scaffold_200270 (43348-43513) | |
| 26-209, gnl|panTro1|chr16 (67432388-67432572) | |
| 26-209, gnl|panTro1|chr18 (50138999-50139164) | |
| 26-209, gnl|rheMac2|chr20 (55787562-55787727) | |
| 26-209, gnl|rheMac2|chr7 (47452325-47452512) | |
| 26-209, gnl|rn3|chr19 (10628324-10628159) | |
| 26-209, gnl|rn3|chr19 (10628136-10628318) | |
| 26-209, gnl|tetNig1|chr13 (678965-679127) | |
| 26-209, gnl|tetNig1|chr13 (679133-678991) | |
| 210-366, gnl|bosTau2|chr18 (21498405-21498561) | |
| 210-366, gnl|canFam2|chr2 (61863578-61863390) | |
| 210-366, gnl|canFam2|chr2 (61863404-61863557) | |
| 210-366, gnl|danRer3|chr25 (16818350-16818124) | |
| 210-366, gnl|danRer3|chr25 (16818137-16818299) | |
| 210-366, gnl|dasNov1|scaffold_70770 (3578-3390) | |
| 210-366, gnl|dasNov1|scaffold_70770 (3404-3557) | |
| 210-366, gnl|echTel1|scaffold_280747 (32689-32825) | |
| 210-366, gnl|echTel1|scaffold_280747 (32825-32689) | |
| 210-366, gnl|fr1|chrUn (201361803-201361637) | |
| 210-366, gnl|fr1|chrUn (201361576-201361789) | |
| 210-366, gnl|galGal2|chr11 (542313-542133) | |
| 210-366, gnl|hg17|chr15 (66913354-66913507) | |
| 210-366, gnl|hg17|chr16 (56030574-56030761) | |
| 210-366, gnl|Hg17|chr16 (56030747-56030591) | |
| 210-366, gnl|mm7|chr8 (93420796-93420981) | |
| 210-366, gnl|mm7|chr8 (93420970-93420817) | |
| 210-366, gnl|Mm7|chr8 (93420969-93420813) | |
| 210-366, gnl|monDom2|scaffold_35 (24450265-24450452) | |
| 210-366, gnl|monDom2|scaffold_35 (24450434-24450281) | |
| 210-366, gnl|oryCun1|scaffold_200270 (42745-42930) | |
| 210-366, gnl|panTro1|chr16 (67432573-67432726) | |
| 210-366, gnl|panTro1|chr18 (50137383-50137570) | |
| 210-366, gnl|rheMac2|chr20 (55787017-55787204) | |
| 210-366, gnl|rheMac2|chr7 (47452513-47452666) | |
| 210-366, gnl|rn3|chr19 (10628878-10628709) | |
| 210-366, gnl|rn3|chr19 (10628720-10628873) | |
| 438-603, gnl|bosTau2|chr18 (21501508-21501673) | |
| 438-603, gnl|Hg17|chr16 (56025627-56025456) | |
| 438-603, gnl|Mm7|chr8 (93417485-93417320) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 26-209, gnl|bosTau2|chr18 (21497563-21497746) | |
| 26-209, gnl|canFam2|chr2 (61862944-61862779) | |
| 26-209, gnl|canFam2|chr2 (61862757-61862938) | |
| 26-209, gnl|echTel1|scaffold_280747 (32826-32983) | |
| 26-209, gnl|echTel1|scaffold_280747 (33006-32826) | |
| 26-209, gnl|fr1|chrUn (201361571-201361406) | |
| 26-209, gnl|fr1|chrUn (201361407-201361565) | |
| 26-209, gnl|galGal2|chr11 (541357-541192) | |
| 26-209, gnl|hg17|chr15 (66913169-66913353) | |
| 26-209, gnl|hg17|chr16 (56032180-56032345) | |
| 26-209, gnl|Hg17|chr16 (56032374-56032185) | |
| 26-209, gnl|loxAfr1|scaffold_11869 (70447-70612) | |
| 26-209, gnl|loxAfr1|scaffold_11869 (70635-70453) | |
| 26-209, gnl|mm7|chr8 (93421554-93421719) | |
| 26-209, gnl|mm7|chr8 (93421740-93421560) | |
| 26-209, gnl|Mm7|chr8 (93421743-93421559) | |
| 26-209, gnl|monDom2|scaffold_35 (24450952-24451117) | |
| 26-209, gnl|monDom2|scaffold_35 (24451139-24450958) | |
| 26-209, gnl|oryCun1|scaffold_200270 (43348-43513) | |
| 26-209, gnl|panTro1|chr16 (67432388-67432572) | |
| 26-209, gnl|panTro1|chr18 (50138999-50139164) | |
| 26-209, gnl|rheMac2|chr20 (55787562-55787727) | |
| 26-209, gnl|rheMac2|chr7 (47452325-47452512) | |
| 26-209, gnl|rn3|chr19 (10628324-10628159) | |
| 26-209, gnl|rn3|chr19 (10628136-10628318) | |
| 26-209, gnl|tetNig1|chr13 (678965-679127) | |
| 26-209, gnl|tetNig1|chr13 (679133-678991) | |
| 210-366, gnl|bosTau2|chr18 (21498405-21498561) | |
| 210-366, gnl|canFam2|chr2 (61863578-61863390) | |
| 210-366, gnl|canFam2|chr2 (61863404-61863557) | |
| 210-366, gnl|danRer3|chr25 (16818350-16818124) | |
| 210-366, gnl|danRer3|chr25 (16818137-16818299) | |
| 210-366, gnl|dasNov1|scaffold_70770 (3578-3390) | |
| 210-366, gnl|dasNov1|scaffold_70770 (3404-3557) | |
| 210-366, gnl|echTel1|scaffold_280747 (32689-32825) | |
| 210-366, gnl|echTel1|scaffold_280747 (32825-32689) | |
| 210-366, gnl|fr1|chrUn (201361803-201361637) | |
| 210-366, gnl|fr1|chrUn (201361576-201361789) | |
| 210-366, gnl|galGal2|chr11 (542313-542133) | |
| 210-366, gnl|hg17|chr15 (66913354-66913507) | |
| 210-366, gnl|hg17|chr16 (56030574-56030761) | |
| 210-366, gnl|Hg17|chr16 (56030747-56030591) | |
| 210-366, gnl|mm7|chr8 (93420796-93420981) | |
| 210-366, gnl|mm7|chr8 (93420970-93420817) | |
| 210-366, gnl|Mm7|chr8 (93420969-93420813) | |
| 210-366, gnl|monDom2|scaffold_35 (24450265-24450452) | |
| 210-366, gnl|monDom2|scaffold_35 (24450434-24450281) | |
| 210-366, gnl|oryCun1|scaffold_200270 (42745-42930) | |
| 210-366, gnl|panTro1|chr16 (67432573-67432726) | |
| 210-366, gnl|panTro1|chr18 (50137383-50137570) | |
| 210-366, gnl|rheMac2|chr20 (55787017-55787204) | |
| 210-366, gnl|rheMac2|chr7 (47452513-47452666) | |
| 210-366, gnl|rn3|chr19 (10628878-10628709) | |
| 210-366, gnl|rn3|chr19 (10628720-10628873) | |
| 438-603, gnl|bosTau2|chr18 (21501508-21501673) | |
| 438-603, gnl|Hg17|chr16 (56025627-56025456) | |
| 438-603, gnl|Mm7|chr8 (93417485-93417320) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| lnt (0.284616) | |
| nca (0.273748) | |
| ute (0.265569) | |
| cov (0.264306) | |
| mas (0.210305) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| ton (0.1755) | |
| cst (0.140036) | |
| ese (0.126502) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| ecc (0.115035) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lnt (0.284616) | |
| nca (0.273748) | |
| ute (0.265569) | |
| cov (0.264306) | |
| mas (0.210305) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| ton (0.1755) | |
| cst (0.140036) | |
| ese (0.126502) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| ecc (0.115035) |