Non-Coding RNA Search

Ss1.1-Pig4-TMW8037O07.3

Sequence:


               
               CCTCTCTGAGCCAGGCGAAGGAGCCCCCAGCCCTGGCCCTGTGGGCACCGTCCCTTCCCA
CCTACCCACAGACCCAGGCTCTGGAGTGGGGACTCGAATGCACAGCCTGGACGGCACCCC
CACTCACTCTGCTGCGGCCCAGAGCCCTGCCCCACGCGGCCCTGCACCCATGAACTGACC
TTACAGGCAAAGGAGCCGCAGCCGGAAACACTACCTCATCCAACCTGGCGGAGGGGAGGC
CCCTGGAACCAGCCCCCAGTTGGTTTCTGCTTCAGCCACCAAAATATCCCCATCATCTCC
CCTCACCCAGAGAGGACCTTGGCCACTCACAGCATCAAGCAGCGTCAGATTTTTGTTGCT
CAAGTGGCCACCGGTGGAGGAGGCAGCCCCCACTGCCCGTGGCAGGCTCCGTACTGTCCA
GGGAGCTGGTGGGTGGAGGATGTGGGGACAGGTGCTGGGCGATCCTGGTCTCTAGGGAGA
AGAGGGGAGGGGGCTGAGTTGCACCAAGGCTGTAGCTGGGCTACTTGATCTTGCTGTAAG
TGTTTCTACAGATAGCACCACTTTTTTTTGTTTGTTTTTTTAAAAAAGCTTTTTTATATG
TTAAAAAAACTTACCATGCGCCAACTGTGAATAGCTGCCGCTAGTGCAGAGGACCCAGGA
GAGGTCCCCGAGGGCTCCCAGCACAACACTGGAAATAATGGTGCCAGGGATGGACAGGCC
TGGCGGAGACCCCCGGCGCCCTGAGAACATCACCTTTTCTGTTGCCATTAGAATCGGTGT
CTGGCTGACCCGGGGCCTGTGCAGACCCAGCCAGCGCAGGGACAGGCGGGGCCTGCTGGG
CTAGAGGGGGAGGCTGGGATGCTCTGGAATCTTCTTTATAATAAAAGCCTGATGGGAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCTCTGAGCCAGGCGAAGGAGCCCCCAGCCCTGGCCCTGTGGGCACCGTCCCTTCCCA
CCTACCCACAGACCCAGGCTCTGGAGTGGGGACTCGAATGCACAGCCTGGACGGCACCCC
CACTCACTCTGCTGCGGCCCAGAGCCCTGCCCCACGCGGCCCTGCACCCATGAACTGACC
TTACAGGCAAAGGAGCCGCAGCCGGAAACACTACCTCATCCAACCTGGCGGAGGGGAGGC
CCCTGGAACCAGCCCCCAGTTGGTTTCTGCTTCAGCCACCAAAATATCCCCATCATCTCC
CCTCACCCAGAGAGGACCTTGGCCACTCACAGCATCAAGCAGCGTCAGATTTTTGTTGCT
CAAGTGGCCACCGGTGGAGGAGGCAGCCCCCACTGCCCGTGGCAGGCTCCGTACTGTCCA
GGGAGCTGGTGGGTGGAGGATGTGGGGACAGGTGCTGGGCGATCCTGGTCTCTAGGGAGA
AGAGGGGAGGGGGCTGAGTTGCACCAAGGCTGTAGCTGGGCTACTTGATCTTGCTGTAAG
TGTTTCTACAGATAGCACCACTTTTTTTTGTTTGTTTTTTTAAAAAAGCTTTTTTATATG
TTAAAAAAACTTACCATGCGCCAACTGTGAATAGCTGCCGCTAGTGCAGAGGACCCAGGA
GAGGTCCCCGAGGGCTCCCAGCACAACACTGGAAATAATGGTGCCAGGGATGGACAGGCC
TGGCGGAGACCCCCGGCGCCCTGAGAACATCACCTTTTCTGTTGCCATTAGAATCGGTGT
CTGGCTGACCCGGGGCCTGTGCAGACCCAGCCAGCGCAGGGACAGGCGGGGCCTGCTGGG
CTAGAGGGGGAGGCTGGGATGCTCTGGAATCTTCTTTATAATAAAAGCCTGATGGGAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               574-692, - strand, RNAz p=0.987613

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               574-692, - strand, RNAz p=0.987613

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               360-900, gnl|bosTau2|chr8 (40920493-40919975)
               

               
               360-900, gnl|Hg17|chr3 (130757327-130756759)
               

               
               360-900, gnl|Mm7|chr6 (115980930-115980488)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               360-900, gnl|bosTau2|chr8 (40920493-40919975)
               

               
               360-900, gnl|Hg17|chr3 (130757327-130756759)
               

               
               360-900, gnl|Mm7|chr6 (115980930-115980488)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cly (0.482567)
               

               
               eru (0.240096)
               

               
               nlu (0.191681)
               

               
               che (0.136314)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               jca (0.11396)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.482567)
               

               
               eru (0.240096)
               

               
               nlu (0.191681)
               

               
               che (0.136314)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               jca (0.11396)

	360-900, gnl\|bosTau2\|chr8 (40920493-40919975)
	360-900, gnl\|Hg17\|chr3 (130757327-130756759)
	360-900, gnl\|Mm7\|chr6 (115980930-115980488)

	cly (0.482567)
	eru (0.240096)
	nlu (0.191681)
	che (0.136314)
	cov (0.132153)
	ese (0.126502)
	jca (0.11396)