Non-Coding RNA Search

Ss1.1-Pig4-TMW8037O12.3

Sequence:


               
               ACCTCAAGTTAGATTGTCAATTAAAACAAGAGGGAAACTGAGCTCTTCTTTCTCAAGTCG
TGGCCAACGACAAGATCCTGGAAGATATACTTCAAGGAGTCAGCAGAGTACACCCAAAAC
AACTCTTTCTTCTAAAACTACCAGTACAAGCCTAAGGAAAGATAAAATCTGCTCCTCCTA
CAGAAACTAAGTCTTTAAGAATTGCCAGTCGTTCTACTCGCCAGAGTCATGACCCACTGC
AAGCAGATGTATTCGTGGAACTACTCAGTCCTCGTAGAAAACGTAGAGGCAGGAAAAGTG
CTAATAATACACCAGAAAGTAGTCCCAACCTGCCTAACTTCAGGGTCATTGCTACAAAGT
CAAGTGAGCAATCAAGATCTCTAAATGTTGCTTCAAAACTTTCTCTGCAAGATAGTGAAT
CCAAGAGAAGAGGCAGGAAAAGACAATCTACAGAATCATCTCCTATGACACTGAATCGAA
GGAGTTCAGGCCGACAGGGAGGAGTTCATGAATTGTCTGCTTTTGAACAACTTGTTGTAG
AATTGGTACGGCATGATGACAGCTGGCCTTTTTTGAAACTTGTTTCTAAAATCCAGGTCC
CAGACTATTATGACATCATCAAAAAGCCCATTGCCTTAAATATAATTCGTGAAAAAGTGA
ACAAATGTGAATATAAATTAGCATCTGAGTTTATTGATGATATTGAGTTAATGTTTTCGA
ACTGCTTTGAATACAACCCTCGTAACACAAGTGAAGCAAAAGCTGGAAGTAGGCTTCAAG
CTTTTTTTCACATTCAGGCACAAAAACTTGGACTCCATGTCACCCCTGGGAATGTGGATC
AGGTTAGCACACCTCCGGCGGCAAAAAAGTCACGAATCTAATTTTGTCCTTCTAAAGGAT
ATATCTGAAGAAAACAAATTGTTCATGAAAATGGAACGTTAAATCATGCTCTAAAGCAGA
CATATATATATAAAGCAATAACAACTGATTGACCACATTGAAGTGTGGCCTGCACTATAT
ATATTCTCAACGTTGATATTAAGCACTCAGGAGAATGTAGGAAAGATTTCCTTTGCTACA
GTTTTGTTCAGTATCTACTAAGTTTGATAGATGTATTGGATACAGTACTGGTTTACAGAG
GTTTTTGTACATTTTGAGATCATTCATGTGTCCCCATATCTCAGAAAATATTTTTTCACC
TATGATTTATTTTGCCATTGACTTTTTTTGGAAGTGTGGTATTAAGGGAGATTTATCTAC
ACAGATCTTCCATTATAACACAGTTTAGAAAAAAGTTATGTCTGAGAATTGTTTAATGAG
CACATTCTTTCAACACTACACATGAATGAATCCAATTTTATATCCTTGAAGTGCTGTACC
AGTGCTGGCTGGAGGTATTAAGTCTGAGTTTATTAATTAGATATTTATTTAGCATTCAGA
GTAATTTGTGAATTTGTTTTGTATTTATAAAATTTGTACCTGGAAAATGTTCTTTAATTT
TTTAAACATTTTATTGTGTTTTCGTTTTATTTCTCTAACTTCCTTAATCAATCAATAAAA
GATAATACCCTCCCCTTTCCCTGGCAGTTCTTTCGGTTTTACAGAACTGTATTATAAGTT
TTTATGTACAACTTTTTAAGTGTACAAATAAAATGATACATTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCTCAAGTTAGATTGTCAATTAAAACAAGAGGGAAACTGAGCTCTTCTTTCTCAAGTCG
TGGCCAACGACAAGATCCTGGAAGATATACTTCAAGGAGTCAGCAGAGTACACCCAAAAC
AACTCTTTCTTCTAAAACTACCAGTACAAGCCTAAGGAAAGATAAAATCTGCTCCTCCTA
CAGAAACTAAGTCTTTAAGAATTGCCAGTCGTTCTACTCGCCAGAGTCATGACCCACTGC
AAGCAGATGTATTCGTGGAACTACTCAGTCCTCGTAGAAAACGTAGAGGCAGGAAAAGTG
CTAATAATACACCAGAAAGTAGTCCCAACCTGCCTAACTTCAGGGTCATTGCTACAAAGT
CAAGTGAGCAATCAAGATCTCTAAATGTTGCTTCAAAACTTTCTCTGCAAGATAGTGAAT
CCAAGAGAAGAGGCAGGAAAAGACAATCTACAGAATCATCTCCTATGACACTGAATCGAA
GGAGTTCAGGCCGACAGGGAGGAGTTCATGAATTGTCTGCTTTTGAACAACTTGTTGTAG
AATTGGTACGGCATGATGACAGCTGGCCTTTTTTGAAACTTGTTTCTAAAATCCAGGTCC
CAGACTATTATGACATCATCAAAAAGCCCATTGCCTTAAATATAATTCGTGAAAAAGTGA
ACAAATGTGAATATAAATTAGCATCTGAGTTTATTGATGATATTGAGTTAATGTTTTCGA
ACTGCTTTGAATACAACCCTCGTAACACAAGTGAAGCAAAAGCTGGAAGTAGGCTTCAAG
CTTTTTTTCACATTCAGGCACAAAAACTTGGACTCCATGTCACCCCTGGGAATGTGGATC
AGGTTAGCACACCTCCGGCGGCAAAAAAGTCACGAATCTAATTTTGTCCTTCTAAAGGAT
ATATCTGAAGAAAACAAATTGTTCATGAAAATGGAACGTTAAATCATGCTCTAAAGCAGA
CATATATATATAAAGCAATAACAACTGATTGACCACATTGAAGTGTGGCCTGCACTATAT
ATATTCTCAACGTTGATATTAAGCACTCAGGAGAATGTAGGAAAGATTTCCTTTGCTACA
GTTTTGTTCAGTATCTACTAAGTTTGATAGATGTATTGGATACAGTACTGGTTTACAGAG
GTTTTTGTACATTTTGAGATCATTCATGTGTCCCCATATCTCAGAAAATATTTTTTCACC
TATGATTTATTTTGCCATTGACTTTTTTTGGAAGTGTGGTATTAAGGGAGATTTATCTAC
ACAGATCTTCCATTATAACACAGTTTAGAAAAAAGTTATGTCTGAGAATTGTTTAATGAG
CACATTCTTTCAACACTACACATGAATGAATCCAATTTTATATCCTTGAAGTGCTGTACC
AGTGCTGGCTGGAGGTATTAAGTCTGAGTTTATTAATTAGATATTTATTTAGCATTCAGA
GTAATTTGTGAATTTGTTTTGTATTTATAAAATTTGTACCTGGAAAATGTTCTTTAATTT
TTTAAACATTTTATTGTGTTTTCGTTTTATTTCTCTAACTTCCTTAATCAATCAATAAAA
GATAATACCCTCCCCTTTCCCTGGCAGTTCTTTCGGTTTTACAGAACTGTATTATAAGTT
TTTATGTACAACTTTTTAAGTGTACAAATAAAATGATACATTTTTTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61812191|ref|XP_584190.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61812191|ref|XP_584190.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               81-200, - strand, RNAz p=0.727501
               

               
               922-1159, + strand, RNAz p=0.941434

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-200, - strand, RNAz p=0.727501
               

               
               922-1159, + strand, RNAz p=0.941434

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_182648, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_182648, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-453, gnl|bosTau2|chr21 (29537043-29536592)
               

               
               1-453, gnl|Hg17|chr14 (34301162-34300714)
               

               
               1-453, gnl|Mm7|chr12 (52867132-52866690)
               


               
               685-1668, gnl|bosTau2|chr21 (29533016-29532031)
               

               
               685-1668, gnl|Hg17|chr14 (34292661-34291697)
               

               
               685-1668, gnl|Mm7|chr12 (52862853-52861908)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-453, gnl|bosTau2|chr21 (29537043-29536592)
               

               
               1-453, gnl|Hg17|chr14 (34301162-34300714)
               

               
               1-453, gnl|Mm7|chr12 (52867132-52866690)
               


               
               685-1668, gnl|bosTau2|chr21 (29533016-29532031)
               

               
               685-1668, gnl|Hg17|chr14 (34292661-34291697)
               

               
               685-1668, gnl|Mm7|chr12 (52862853-52861908)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               sin (0.349895)
               

               
               nje (0.33184)
               

               
               cbl (0.229595)
               

               
               tes (0.207814)
               

               
               ton (0.1755)
               

               
               spl (0.143184)
               

               
               ecc (0.115035)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.349895)
               

               
               nje (0.33184)
               

               
               cbl (0.229595)
               

               
               tes (0.207814)
               

               
               ton (0.1755)
               

               
               spl (0.143184)
               

               
               ecc (0.115035)

	81-200, - strand, RNAz p=0.727501
	922-1159, + strand, RNAz p=0.941434

	1-453, gnl\|bosTau2\|chr21 (29537043-29536592)
	1-453, gnl\|Hg17\|chr14 (34301162-34300714)
	1-453, gnl\|Mm7\|chr12 (52867132-52866690)

	685-1668, gnl\|bosTau2\|chr21 (29533016-29532031)
	685-1668, gnl\|Hg17\|chr14 (34292661-34291697)
	685-1668, gnl\|Mm7\|chr12 (52862853-52861908)

	sin (0.349895)
	nje (0.33184)
	cbl (0.229595)
	tes (0.207814)
	ton (0.1755)
	spl (0.143184)
	ecc (0.115035)