Non-Coding RNA Search

Ss1.1-Pig4-TMW8037O14.3

Sequence:


               
               GTGCAGTGCAAGTTCAGTAGTTTCTGGAGCAGTTGGTCAAAGGAGGAATTGTTCCTGCAG
ATTACCAGCCATGGTTTGGGCAATCTGATTTCTATCCTGAAGGGTAGGGAGGAACAGTTA
TGGAAAGAGGGATAGGCAAGGGCCACCATGGAAAATTTTGTCCTTAAAGATCTTTAACAT
GGTTTTTAAAGGAAATTTTCAAGCCTTAACCTAATGAGAGTCAAATAGCTCTTCAACATT
CTCTTTTTGGAATTCCCATTGTGGCTCAGTGGTTAACCTGACTAGTATCCCTGAAGACGC
AGGTTCGATCCCTGGCCTCGTTCAGTGGGTAAGGATCTGGTATTGCCGTGAGCTGTAGTG
TAGGTCACAGATAAGGCATGGATCCCGCCTTGCTATAGCTGTGGAGTAGGCCAGCAGCTA
CAGCTCCAATTCAGTCTCTGCCGTGGGAACCTTCATGTCACCAGTATGGCCCTCGTCTTC
GTGCTGGCGGACGACCTGGGCTGGAACGACGTGGGCTTCCACGGCTCGGAAATCCGCACG
CCGCACCTGGACGCGCTGGCGGCCGGCGGAGTGCTGCTGGACAACTACTACACGCAGCCG
CTGTGCACGCCATCGCGGAGCCAGCTGCTCACCGGCCGCTACCAGGTACGCAGCGCCCCC
GGCGGCCCGCCGCGCCCCGCGCCCGGCTCCGCCCCCGCCTCCGGCCGCGGCCCTCCTCCT
CCGGCCGCCCCGCTCCGCTCCGATCCGGGCCTGCCCGGCCCGCGACCTTCCTAGAAGTGG
GGCCCGAGACCCAGGCGGCGACAGGCCAGTCGGGGTTTTGACACTTACTTTGGCTACCTT
CTAGGTAGTGAAGATTACTATTACCATGAGCGCTGAACGTTAATCAATGCTCTGAATGTC
ACACGATGTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGCAGTGCAAGTTCAGTAGTTTCTGGAGCAGTTGGTCAAAGGAGGAATTGTTCCTGCAG
ATTACCAGCCATGGTTTGGGCAATCTGATTTCTATCCTGAAGGGTAGGGAGGAACAGTTA
TGGAAAGAGGGATAGGCAAGGGCCACCATGGAAAATTTTGTCCTTAAAGATCTTTAACAT
GGTTTTTAAAGGAAATTTTCAAGCCTTAACCTAATGAGAGTCAAATAGCTCTTCAACATT
CTCTTTTTGGAATTCCCATTGTGGCTCAGTGGTTAACCTGACTAGTATCCCTGAAGACGC
AGGTTCGATCCCTGGCCTCGTTCAGTGGGTAAGGATCTGGTATTGCCGTGAGCTGTAGTG
TAGGTCACAGATAAGGCATGGATCCCGCCTTGCTATAGCTGTGGAGTAGGCCAGCAGCTA
CAGCTCCAATTCAGTCTCTGCCGTGGGAACCTTCATGTCACCAGTATGGCCCTCGTCTTC
GTGCTGGCGGACGACCTGGGCTGGAACGACGTGGGCTTCCACGGCTCGGAAATCCGCACG
CCGCACCTGGACGCGCTGGCGGCCGGCGGAGTGCTGCTGGACAACTACTACACGCAGCCG
CTGTGCACGCCATCGCGGAGCCAGCTGCTCACCGGCCGCTACCAGGTACGCAGCGCCCCC
GGCGGCCCGCCGCGCCCCGCGCCCGGCTCCGCCCCCGCCTCCGGCCGCGGCCCTCCTCCT
CCGGCCGCCCCGCTCCGCTCCGATCCGGGCCTGCCCGGCCCGCGACCTTCCTAGAAGTGG
GGCCCGAGACCCAGGCGGCGACAGGCCAGTCGGGGTTTTGACACTTACTTTGGCTACCTT
CTAGGTAGTGAAGATTACTATTACCATGAGCGCTGAACGTTAATCAATGCTCTGAATGTC
ACACGATGTGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|236698|gb|AAB19988.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|236698|gb|AAB19988.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               471-681, gnl|bosTau2|chr10 (5865131-5864923)
               

               
               471-681, gnl|Hg17|chr5 (78316690-78316482)
               

               
               471-681, gnl|Mm7|chr13 (90834907-90835116)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               471-681, gnl|bosTau2|chr10 (5865131-5864923)
               

               
               471-681, gnl|Hg17|chr5 (78316690-78316482)
               

               
               471-681, gnl|Mm7|chr13 (90834907-90835116)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cst (0.140036)
               

               
               cly (0.120642)
               

               
               spc (0.113366)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)
               

               
               cly (0.120642)
               

               
               spc (0.113366)

	471-681, gnl\|bosTau2\|chr10 (5865131-5864923)
	471-681, gnl\|Hg17\|chr5 (78316690-78316482)
	471-681, gnl\|Mm7\|chr13 (90834907-90835116)