Ss1.1-Pig4-TMW8037O16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCTCCAAGAAGGAACAAGCCCCGTCGGGAGCGGAGCTGGAGAGACAGCAAATCCTTCAG GAAATGAGGAAGAGAACATCCCTTTACGATGACAACAGCTGGATCCGACAGCGCAGTTCC AGCATAAATAAAGAGCCCATTTGTCTGCCTGGGATTATGAGAAGAGGCGAATCTCTAGAT AACCTGGATTCCCCAAGAACCAATTCTTGGCGACAGTCCCCTTGGCTCAATCAGCCTTCC GGGGTCTATGCTTCCTCCTCTGTCCAAGACTTCAGTCGCCCCCCTCCTCAGCTGCTGTCC ACGTCAAACCGAGCCTACATGCGAAGCCCATCCTCCAGCATCCCCCCGCCTTCAGCCGGT TCTGTGAAGACCACCTCGCCCTCTCCTACACCACGCGGCCATCCCCCCGCGGCTCCGCAG CCAGGCTCCCAGCCGCGCAGCAGGTCGGTCAGTGGGAAGCGCGTGTGCTCCTACTGTAAT AACATTCTGGGCAAAGGAGCTGCCATGATCATCGAGTCCCTGGGTCTTTGTTATCATTTA CATTGTTTCAAGTGTGTGTCCTGTGAGCGTGACCTCGGAGGCTCTTCCTCAGGAGCCGAA GTCAGAATCCGAAACAACCAACTGTACTGCAACGACTGCTATCTCAGATTCAAATCTGGA CGGCCAACCGCCATGTGATGTAAGCCTGCACACGAAAGCGCTGTTGCAGATAGAAGAGGA GGTGGTTGCTGCAGATGTAGATCTATAAATATATGTTGTATGTCTTTTTCGCTCTTTTTT AAAAAAGAATAACACTTTTTTTCCTGGCCTCTTTAGATTACACCAGAGCATTCTAATCTT GGTAGAACACGTATTTTTGTTGTTTATTTATAAGAAGGTAATTATGCGTGGGGGAAAGTG CCGTATTTTACTCTTTTTCAAATTCAGCATCGTTAAAGCACAAGAGAAAAATAAGAACAG CATATTTTTTTTGAGGCTGATAATGATCTTGTTTGACTTTCTAGTGGTGTTTTGAAGAGG GTTATTTTATTGGTTTTTTTTTTTAAGGTTCTGAAACATTATTTGAAATAGTTAATATAA ATATGTAATTGCATTTGCTCTGTTTATTGGAATGTATGCTAAATTAATGCAGAACCATAT GGAAAATTCCACTAAGCGCCACCTCCAAGTTTGCGTTCTGTATCCTTCTTTTCATCTATG TAACATTATGATTAATTTTTTTTTTAGCTTATGTTAACATTTTATTTGCTTGATGTGGGG AGCTCTGTTTTCTTCACCAGAATTGTCCTAAGCAATTCCCAGTAGGAAGCTGCTTCTTTT CATTCATGGAAAATCTTCATGTAAGAAGTAAGGCTTTCTGTTCCACTGCATTTGTAAATA AACTTGCTGATGCATTTAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCTCCAAGAAGGAACAAGCCCCGTCGGGAGCGGAGCTGGAGAGACAGCAAATCCTTCAG GAAATGAGGAAGAGAACATCCCTTTACGATGACAACAGCTGGATCCGACAGCGCAGTTCC AGCATAAATAAAGAGCCCATTTGTCTGCCTGGGATTATGAGAAGAGGCGAATCTCTAGAT AACCTGGATTCCCCAAGAACCAATTCTTGGCGACAGTCCCCTTGGCTCAATCAGCCTTCC GGGGTCTATGCTTCCTCCTCTGTCCAAGACTTCAGTCGCCCCCCTCCTCAGCTGCTGTCC ACGTCAAACCGAGCCTACATGCGAAGCCCATCCTCCAGCATCCCCCCGCCTTCAGCCGGT TCTGTGAAGACCACCTCGCCCTCTCCTACACCACGCGGCCATCCCCCCGCGGCTCCGCAG CCAGGCTCCCAGCCGCGCAGCAGGTCGGTCAGTGGGAAGCGCGTGTGCTCCTACTGTAAT AACATTCTGGGCAAAGGAGCTGCCATGATCATCGAGTCCCTGGGTCTTTGTTATCATTTA CATTGTTTCAAGTGTGTGTCCTGTGAGCGTGACCTCGGAGGCTCTTCCTCAGGAGCCGAA GTCAGAATCCGAAACAACCAACTGTACTGCAACGACTGCTATCTCAGATTCAAATCTGGA CGGCCAACCGCCATGTGATGTAAGCCTGCACACGAAAGCGCTGTTGCAGATAGAAGAGGA GGTGGTTGCTGCAGATGTAGATCTATAAATATATGTTGTATGTCTTTTTCGCTCTTTTTT AAAAAAGAATAACACTTTTTTTCCTGGCCTCTTTAGATTACACCAGAGCATTCTAATCTT GGTAGAACACGTATTTTTGTTGTTTATTTATAAGAAGGTAATTATGCGTGGGGGAAAGTG CCGTATTTTACTCTTTTTCAAATTCAGCATCGTTAAAGCACAAGAGAAAAATAAGAACAG CATATTTTTTTTGAGGCTGATAATGATCTTGTTTGACTTTCTAGTGGTGTTTTGAAGAGG GTTATTTTATTGGTTTTTTTTTTTAAGGTTCTGAAACATTATTTGAAATAGTTAATATAA ATATGTAATTGCATTTGCTCTGTTTATTGGAATGTATGCTAAATTAATGCAGAACCATAT GGAAAATTCCACTAAGCGCCACCTCCAAGTTTGCGTTCTGTATCCTTCTTTTCATCTATG TAACATTATGATTAATTTTTTTTTTAGCTTATGTTAACATTTTATTTGCTTGATGTGGGG AGCTCTGTTTTCTTCACCAGAATTGTCCTAAGCAATTCCCAGTAGGAAGCTGCTTCTTTT CATTCATGGAAAATCTTCATGTAAGAAGTAAGGCTTTCTGTTCCACTGCATTTGTAAATA AACTTGCTGATGCATTTAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 163-281, - strand, RNAz p=0.508498 | |
| 163-276, - strand, RNAz p=0.703477 | |
| 317-433, - strand, RNAz p=0.568604 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 163-281, - strand, RNAz p=0.508498 | |
| 163-276, - strand, RNAz p=0.703477 | |
| 317-433, - strand, RNAz p=0.568604 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 163-445, gnl|bosTau2|chr12 (26563603-26563321) | |
| 163-445, gnl|canFam2|chr22 (32560340-32560584) | |
| 163-445, gnl|dasNov1|scaffold_15729 (46909-47141) | |
| 163-445, gnl|echTel1|scaffold_302073 (7346-7111) | |
| 163-445, gnl|galGal2|chr1 (151570788-151570565) | |
| 163-445, gnl|hg17|chr13 (75325206-75325438) | |
| 163-445, gnl|Hg17|chr13 (75325227-75325527) | |
| 163-445, gnl|mm7|chr14 (96345175-96345405) | |
| 163-445, gnl|Mm7|chr14 (96345197-96345476) | |
| 163-445, gnl|monDom2|scaffold_8 (12851487-12851734) | |
| 163-445, gnl|oryCun1|scaffold_159732 (377-144) | |
| 163-445, gnl|panTro1|chr14 (57908065-57908297) | |
| 163-445, gnl|rheMac2|chr17 (56304118-56304350) | |
| 163-445, gnl|rn3|chr15 (85939438-85939667) | |
| 163-445, gnl|xenTro1|scaffold_107 (131900-131683) | |
| 551-655, gnl|bosTau2|chr12 (26560396-26560292) | |
| 551-655, gnl|canFam2|chr22 (32563682-32563811) | |
| 551-655, gnl|danRer3|chr11 (25295003-25295132) | |
| 551-655, gnl|dasNov1|scaffold_15729 (51110-51237) | |
| 551-655, gnl|echTel1|scaffold_302073 (3216-3086) | |
| 551-655, gnl|fr1|chrUn (155181693-155181818) | |
| 551-655, gnl|galGal2|chr1 (151567916-151567787) | |
| 551-655, gnl|hg17|chr13 (75328626-75328756) | |
| 551-655, gnl|Hg17|chr13 (75328641-75328745) | |
| 551-655, gnl|loxAfr1|scaffold_16666 (19712-19588) | |
| 551-655, gnl|mm7|chr14 (96348577-96348706) | |
| 551-655, gnl|Mm7|chr14 (96348591-96348695) | |
| 551-655, gnl|monDom2|scaffold_8 (12860141-12860261) | |
| 551-655, gnl|oryCun1|scaffold_210433 (5552-5428) | |
| 551-655, gnl|panTro1|chr14 (57911485-57911614) | |
| 551-655, gnl|rheMac2|chr17 (56307536-56307665) | |
| 551-655, gnl|rn3|chr15 (85942901-85943030) | |
| 551-655, gnl|tetNig1|chr2 (8144576-8144703) | |
| 551-655, gnl|xenTro1|scaffold_107 (129717-129590) | |
| 656-1341, gnl|bosTau2|chr12 (26558915-26558234) | |
| 656-1341, gnl|Hg17|chr13 (75330058-75330730) | |
| 656-1341, gnl|Mm7|chr14 (96349919-96350628) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 163-445, gnl|bosTau2|chr12 (26563603-26563321) | |
| 163-445, gnl|canFam2|chr22 (32560340-32560584) | |
| 163-445, gnl|dasNov1|scaffold_15729 (46909-47141) | |
| 163-445, gnl|echTel1|scaffold_302073 (7346-7111) | |
| 163-445, gnl|galGal2|chr1 (151570788-151570565) | |
| 163-445, gnl|hg17|chr13 (75325206-75325438) | |
| 163-445, gnl|Hg17|chr13 (75325227-75325527) | |
| 163-445, gnl|mm7|chr14 (96345175-96345405) | |
| 163-445, gnl|Mm7|chr14 (96345197-96345476) | |
| 163-445, gnl|monDom2|scaffold_8 (12851487-12851734) | |
| 163-445, gnl|oryCun1|scaffold_159732 (377-144) | |
| 163-445, gnl|panTro1|chr14 (57908065-57908297) | |
| 163-445, gnl|rheMac2|chr17 (56304118-56304350) | |
| 163-445, gnl|rn3|chr15 (85939438-85939667) | |
| 163-445, gnl|xenTro1|scaffold_107 (131900-131683) | |
| 551-655, gnl|bosTau2|chr12 (26560396-26560292) | |
| 551-655, gnl|canFam2|chr22 (32563682-32563811) | |
| 551-655, gnl|danRer3|chr11 (25295003-25295132) | |
| 551-655, gnl|dasNov1|scaffold_15729 (51110-51237) | |
| 551-655, gnl|echTel1|scaffold_302073 (3216-3086) | |
| 551-655, gnl|fr1|chrUn (155181693-155181818) | |
| 551-655, gnl|galGal2|chr1 (151567916-151567787) | |
| 551-655, gnl|hg17|chr13 (75328626-75328756) | |
| 551-655, gnl|Hg17|chr13 (75328641-75328745) | |
| 551-655, gnl|loxAfr1|scaffold_16666 (19712-19588) | |
| 551-655, gnl|mm7|chr14 (96348577-96348706) | |
| 551-655, gnl|Mm7|chr14 (96348591-96348695) | |
| 551-655, gnl|monDom2|scaffold_8 (12860141-12860261) | |
| 551-655, gnl|oryCun1|scaffold_210433 (5552-5428) | |
| 551-655, gnl|panTro1|chr14 (57911485-57911614) | |
| 551-655, gnl|rheMac2|chr17 (56307536-56307665) | |
| 551-655, gnl|rn3|chr15 (85942901-85943030) | |
| 551-655, gnl|tetNig1|chr2 (8144576-8144703) | |
| 551-655, gnl|xenTro1|scaffold_107 (129717-129590) | |
| 656-1341, gnl|bosTau2|chr12 (26558915-26558234) | |
| 656-1341, gnl|Hg17|chr13 (75330058-75330730) | |
| 656-1341, gnl|Mm7|chr14 (96349919-96350628) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| tbr (0.616713) | |
| pro (0.512033) | |
| hea (0.408998) | |
| rec (0.346141) | |
| vin (0.332557) | |
| mgp (0.230681) | |
| col (0.195008) | |
| duo (0.172801) | |
| isp (0.150376) | |
| ski (0.146735) | |
| liv (0.146284) | |
| lin (0.145603) | |
| hlv (0.139256) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| thg (0.126791) | |
| tra (0.123092) | |
| cty (0.10408) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tbr (0.616713) | |
| pro (0.512033) | |
| hea (0.408998) | |
| rec (0.346141) | |
| vin (0.332557) | |
| mgp (0.230681) | |
| col (0.195008) | |
| duo (0.172801) | |
| isp (0.150376) | |
| ski (0.146735) | |
| liv (0.146284) | |
| lin (0.145603) | |
| hlv (0.139256) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| thg (0.126791) | |
| tra (0.123092) | |
| cty (0.10408) |