Non-Coding RNA Search

Ss1.1-Pig4-TMW8037O19.3

Sequence:


               
               AGCAGCCAGTGATTGAACAGAGAGTGGATGGGTAAAAGTTTAAAGGACCTGTTTTTATGG
TAGATTTTTCTGTAAAAATCTTAAATGTTCCTTTTCAGGCTAGCCAGATATATCAATGTA
CAGATGACTACTCCATTTTCCTGACTATACTATAACATTAAAATGAGTTAAAACCAAACT
CTGCGTTTTGCTCTATGAAAAGTTATTAGTCCATAAGATTTTAAGCTGTGTGTTCACTCC
TACTCTGAAAATGCACAGCCCTGCTCTGGATACCTTTTTGGAAAGTAGAGGGCTCCTAAT
GTGTATGGCACATTGCTGGGCTTTCTCATACATTCCTGGCAGACTTGCCCAAATCCTCAG
ATGGGCTGGGTTGTACAGTATCTTTTCCCCCAAATGTGGGATCTGAAATAAATACTACAT
GGATAGTGGTGATAGATATATTAATTTTTAAAGCTATAAAGTAAATGTGGTCTTTAGTCC
TAGGTTTGTGGTGTGTTCATTTGTGTTAACGTGTAGGGAAGGGACACTGACTCGATGGTT
ATGGGGAGTGTTATCTTGATTATGTGCAGGGGTGCGAATTGCTCAATTATTAACAGCTTT
TCATTTAGGGGTGAGTCATGTGATGAGTGGCCTAATCAGAAAAATGAAGGAATGAAGATG
CAAGCTTTGCCAAGTGATCACGTGAACAAGGTTTTGTATCTTTTTAAAATCAGGTGTTGT
AAAATTTGTGCATGGCCTTTTTTGTTGTTGTTGCTTAGTAATTGATAGAGGAGAAAAAAA
TGAGGGGGACAAAAAAAAAAACCCCTCGGCTTTGCTAACCAATCTTTTCAGAGATACATG
GCTGAGGAGTAAAATCTGACTGGCGTAACGTGTTGAAAGATCCTCTATAATATTCACCCT
ATCCTGCAATCTTCCATATAGAGGACATACATTGTTGTATTCTAGTAATTCACTGTGATT
TATAACAAACCAGTGATGTCATTCTATTGTGCACTTTTGTCAAACCATTTATGTGACTTT
AATAAACATAGTAAACTTGCTGACTGCAACCAGAGGTCTGTTAGTGATTTATATATTGCA
TGACATTTTCTATTTGAGTTTGACTATTTTTAATTTCATGATAACTGACAGTCCTAATAG
CCCAGCTAATTTGAAACTAACAATATTGCTGTGTAAAAGGAAAAATTGGTGTTTGTGTTC
AGTAAATGTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAGCCAGTGATTGAACAGAGAGTGGATGGGTAAAAGTTTAAAGGACCTGTTTTTATGG
TAGATTTTTCTGTAAAAATCTTAAATGTTCCTTTTCAGGCTAGCCAGATATATCAATGTA
CAGATGACTACTCCATTTTCCTGACTATACTATAACATTAAAATGAGTTAAAACCAAACT
CTGCGTTTTGCTCTATGAAAAGTTATTAGTCCATAAGATTTTAAGCTGTGTGTTCACTCC
TACTCTGAAAATGCACAGCCCTGCTCTGGATACCTTTTTGGAAAGTAGAGGGCTCCTAAT
GTGTATGGCACATTGCTGGGCTTTCTCATACATTCCTGGCAGACTTGCCCAAATCCTCAG
ATGGGCTGGGTTGTACAGTATCTTTTCCCCCAAATGTGGGATCTGAAATAAATACTACAT
GGATAGTGGTGATAGATATATTAATTTTTAAAGCTATAAAGTAAATGTGGTCTTTAGTCC
TAGGTTTGTGGTGTGTTCATTTGTGTTAACGTGTAGGGAAGGGACACTGACTCGATGGTT
ATGGGGAGTGTTATCTTGATTATGTGCAGGGGTGCGAATTGCTCAATTATTAACAGCTTT
TCATTTAGGGGTGAGTCATGTGATGAGTGGCCTAATCAGAAAAATGAAGGAATGAAGATG
CAAGCTTTGCCAAGTGATCACGTGAACAAGGTTTTGTATCTTTTTAAAATCAGGTGTTGT
AAAATTTGTGCATGGCCTTTTTTGTTGTTGTTGCTTAGTAATTGATAGAGGAGAAAAAAA
TGAGGGGGACAAAAAAAAAAACCCCTCGGCTTTGCTAACCAATCTTTTCAGAGATACATG
GCTGAGGAGTAAAATCTGACTGGCGTAACGTGTTGAAAGATCCTCTATAATATTCACCCT
ATCCTGCAATCTTCCATATAGAGGACATACATTGTTGTATTCTAGTAATTCACTGTGATT
TATAACAAACCAGTGATGTCATTCTATTGTGCACTTTTGTCAAACCATTTATGTGACTTT
AATAAACATAGTAAACTTGCTGACTGCAACCAGAGGTCTGTTAGTGATTTATATATTGCA
TGACATTTTCTATTTGAGTTTGACTATTTTTAATTTCATGATAACTGACAGTCCTAATAG
CCCAGCTAATTTGAAACTAACAATATTGCTGTGTAAAAGGAAAAATTGGTGTTTGTGTTC
AGTAAATGTTTG

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

Help | Less info


               
               38-136, - strand, RNAz p=0.551478
               

               
               229-386, + strand, RNAz p=0.999541
               

               
               881-996, - strand, RNAz p=0.716192
               

               
               1037-1147, - strand, RNAz p=0.783289

Predicted RNA structure(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               38-136, - strand, RNAz p=0.551478
               

               
               229-386, + strand, RNAz p=0.999541
               

               
               881-996, - strand, RNAz p=0.716192
               

               
               1037-1147, - strand, RNAz p=0.783289

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               1079-1175, + strand, RNAmicro p=0.993212

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1079-1175, + strand, RNAmicro p=0.993212

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               1-1212, gnl|bosTau2|chr10 (9833385-9832182)
               

               
               1-1212, gnl|canFam2|chr30 (35307344-35308423)
               

               
               1-1212, gnl|echTel1|scaffold_256764 (876-1805)
               

               
               1-1212, gnl|hg17|chr15 (66373963-66375012)
               

               
               1-1212, gnl|Hg17|chr15 (66374053-66375247)
               

               
               1-1212, gnl|loxAfr1|scaffold_130598 (1043-4)
               

               
               1-1212, gnl|mm7|chr9 (62821435-62820421)
               

               
               1-1212, gnl|Mm7|chr9 (62821354-62820187)
               

               
               1-1212, gnl|monDom2|scaffold_12 (43804489-43803410)
               

               
               1-1212, gnl|oryCun1|scaffold_158439 (5435-6475)
               

               
               1-1212, gnl|panTro1|chr16 (66893148-66894196)
               

               
               1-1212, gnl|rheMac2|chr7 (46903045-46904109)
               

               
               1-1212, gnl|rn3|chr8 (66964875-66963868)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1212, gnl|bosTau2|chr10 (9833385-9832182)
               

               
               1-1212, gnl|canFam2|chr30 (35307344-35308423)
               

               
               1-1212, gnl|echTel1|scaffold_256764 (876-1805)
               

               
               1-1212, gnl|hg17|chr15 (66373963-66375012)
               

               
               1-1212, gnl|Hg17|chr15 (66374053-66375247)
               

               
               1-1212, gnl|loxAfr1|scaffold_130598 (1043-4)
               

               
               1-1212, gnl|mm7|chr9 (62821435-62820421)
               

               
               1-1212, gnl|Mm7|chr9 (62821354-62820187)
               

               
               1-1212, gnl|monDom2|scaffold_12 (43804489-43803410)
               

               
               1-1212, gnl|oryCun1|scaffold_158439 (5435-6475)
               

               
               1-1212, gnl|panTro1|chr16 (66893148-66894196)
               

               
               1-1212, gnl|rheMac2|chr7 (46903045-46904109)
               

               
               1-1212, gnl|rn3|chr8 (66964875-66963868)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

Help | Less info


               
               mgp (0.461361)
               

               
               gul (0.355177)
               

               
               spl (0.286369)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.461361)
               

               
               gul (0.355177)
               

               
               spl (0.286369)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

	38-136, - strand, RNAz p=0.551478
	229-386, + strand, RNAz p=0.999541
	881-996, - strand, RNAz p=0.716192
	1037-1147, - strand, RNAz p=0.783289

	1-1212, gnl\|bosTau2\|chr10 (9833385-9832182)
	1-1212, gnl\|canFam2\|chr30 (35307344-35308423)
	1-1212, gnl\|echTel1\|scaffold_256764 (876-1805)
	1-1212, gnl\|hg17\|chr15 (66373963-66375012)
	1-1212, gnl\|Hg17\|chr15 (66374053-66375247)
	1-1212, gnl\|loxAfr1\|scaffold_130598 (1043-4)
	1-1212, gnl\|mm7\|chr9 (62821435-62820421)
	1-1212, gnl\|Mm7\|chr9 (62821354-62820187)
	1-1212, gnl\|monDom2\|scaffold_12 (43804489-43803410)
	1-1212, gnl\|oryCun1\|scaffold_158439 (5435-6475)
	1-1212, gnl\|panTro1\|chr16 (66893148-66894196)
	1-1212, gnl\|rheMac2\|chr7 (46903045-46904109)
	1-1212, gnl\|rn3\|chr8 (66964875-66963868)

	mgp (0.461361)
	gul (0.355177)
	spl (0.286369)
	ece (0.229305)
	spc (0.226732)
	tes (0.207814)
	fcc (0.197785)
	fbs (0.175346)
	fhi (0.169578)
	fco (0.157208)
	lin (0.145603)
	ret (0.128733)
	cbr (0.127975)
	tra (0.123092)
	eru (0.120048)
	clu (0.119646)
	ebs (0.118301)
	ldo (0.0970026)