Non-Coding RNA Search

Ss1.1-Pig4-TMW8037O23.3

Sequence:


               
               TCAGGTCGCCCTCAGCAGGTGTCAAGAAGGTGTGATTGCAGAGGGGTGTGCCCCCTGCTG
GTGGAGGAGCACAGCACAGCAGCCCTGTGCAGTGACACCAAGGGCATTCAGCACCATCAC
CGCTTCTTGCTCAGGATAGCTGGTCACCACAGAAGAAATACGTAGTGTGGACAGACATTT
CACTCCTGCCCTAGAACCTGGAACTGCTGACGACATGGAATTCCATGCAAAGTGCATCTG
GATTTCTTATGCAACCTCTGACCGTTTTCTGTAGCTGTCAGACTTCTGGGATTGCCCTTA
GGTTTGTTCTAGGAGAATAACTACGTGTGGCAGCACGTGTTGGCGCTGAACTCAGCACAG
CTCACTTTCTCTGTGCTCAGAGTCAGCTTCCTTCTCTTGAGAAGCTGCTCAGGAGCCCCT
GGAGTCGTTCAGCCTGGGGCCCTTTTGAGCCCACGCTGGCTCCTGTAGTTCTATCTTCCT
AGCAGTCTCTGCTTCCCTAATGGGTAGCAGCCAGCACCTCCTTGATTTCTGCCAGATTGG
ATTGGGCAGAAGCCTTCAAAGACAATGACATTTGTCCAGGACCTAATGTGTCAGGATGTA
TGGAGAGAGTTAGACAACTGGCAGAGAGTTTGGAGTTGAGTTATGGCGGAGAAGCAAGCA
GATGAAAAAAACAAAGCCATTATAAATTTATCAGGAAAGCAAGGGTATTGATTACATGTT
CCATGGCCCCATGGGGACTAGCATTCACCGAGGTGTGCCTTGTCAGCCTGGAATATTAAG
CCAGACGTGGACAATAGGTGTTTGGAAAGCATGTTGGCAGGAAAAATTCAGGGTTTGAGG
GTAGGTTAGAAAGGCAGGCAGTTTATATTTGGTAGTGGAAAATCAGTAATGCCTAAAATT
ACAAAAGCAGGAAATCACAATATAGGCTTAAAAAGAGAGGTATATCCTATCGTTGTTTCT
ATCAATGAAAAATCATTGTTTCAGGAGAGCAAAAGAGAAAAGATTGCTTTTTTTCCATAA
CAAGTCTTGTAGAGCTTTTGACTTTATATCAAGAAATTGTGTAACTTTTGATTAAAAATT
AAAACCAACAACAACAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGGTCGCCCTCAGCAGGTGTCAAGAAGGTGTGATTGCAGAGGGGTGTGCCCCCTGCTG
GTGGAGGAGCACAGCACAGCAGCCCTGTGCAGTGACACCAAGGGCATTCAGCACCATCAC
CGCTTCTTGCTCAGGATAGCTGGTCACCACAGAAGAAATACGTAGTGTGGACAGACATTT
CACTCCTGCCCTAGAACCTGGAACTGCTGACGACATGGAATTCCATGCAAAGTGCATCTG
GATTTCTTATGCAACCTCTGACCGTTTTCTGTAGCTGTCAGACTTCTGGGATTGCCCTTA
GGTTTGTTCTAGGAGAATAACTACGTGTGGCAGCACGTGTTGGCGCTGAACTCAGCACAG
CTCACTTTCTCTGTGCTCAGAGTCAGCTTCCTTCTCTTGAGAAGCTGCTCAGGAGCCCCT
GGAGTCGTTCAGCCTGGGGCCCTTTTGAGCCCACGCTGGCTCCTGTAGTTCTATCTTCCT
AGCAGTCTCTGCTTCCCTAATGGGTAGCAGCCAGCACCTCCTTGATTTCTGCCAGATTGG
ATTGGGCAGAAGCCTTCAAAGACAATGACATTTGTCCAGGACCTAATGTGTCAGGATGTA
TGGAGAGAGTTAGACAACTGGCAGAGAGTTTGGAGTTGAGTTATGGCGGAGAAGCAAGCA
GATGAAAAAAACAAAGCCATTATAAATTTATCAGGAAAGCAAGGGTATTGATTACATGTT
CCATGGCCCCATGGGGACTAGCATTCACCGAGGTGTGCCTTGTCAGCCTGGAATATTAAG
CCAGACGTGGACAATAGGTGTTTGGAAAGCATGTTGGCAGGAAAAATTCAGGGTTTGAGG
GTAGGTTAGAAAGGCAGGCAGTTTATATTTGGTAGTGGAAAATCAGTAATGCCTAAAATT
ACAAAAGCAGGAAATCACAATATAGGCTTAAAAAGAGAGGTATATCCTATCGTTGTTTCT
ATCAATGAAAAATCATTGTTTCAGGAGAGCAAAAGAGAAAAGATTGCTTTTTTTCCATAA
CAAGTCTTGTAGAGCTTTTGACTTTATATCAAGAAATTGTGTAACTTTTGATTAAAAATT
AAAACCAACAACAACAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               133-1099, gnl|bosTau2|chr7 (23425476-23426449)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               133-1099, gnl|bosTau2|chr7 (23425476-23426449)

Expressed library(ies): 39 entry(ies)

More info

Expressed library(ies): 39 entry(ies)

Help | Less info


               
               sag (1.64444)
               

               
               lyg (1.33103)
               

               
               cmu (0.745573)
               

               
               sug (0.636456)
               

               
               ski (0.586941)
               

               
               cte (0.58548)
               

               
               fbs (0.526039)
               

               
               tra (0.492368)
               

               
               lun (0.451467)
               

               
               fat (0.442282)
               

               
               aor (0.390549)
               

               
               spc (0.340097)
               

               
               cki (0.330469)
               

               
               cje (0.330469)
               

               
               isp (0.300752)
               

               
               csk (0.281492)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

Expressed library(ies): 39 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (1.64444)
               

               
               lyg (1.33103)
               

               
               cmu (0.745573)
               

               
               sug (0.636456)
               

               
               ski (0.586941)
               

               
               cte (0.58548)
               

               
               fbs (0.526039)
               

               
               tra (0.492368)
               

               
               lun (0.451467)
               

               
               fat (0.442282)
               

               
               aor (0.390549)
               

               
               spc (0.340097)
               

               
               cki (0.330469)
               

               
               cje (0.330469)
               

               
               isp (0.300752)
               

               
               csk (0.281492)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

	sag (1.64444)
	lyg (1.33103)
	cmu (0.745573)
	sug (0.636456)
	ski (0.586941)
	cte (0.58548)
	fbs (0.526039)
	tra (0.492368)
	lun (0.451467)
	fat (0.442282)
	aor (0.390549)
	spc (0.340097)
	cki (0.330469)
	cje (0.330469)
	isp (0.300752)
	csk (0.281492)
	mgp (0.230681)
	hea (0.204499)
	fcc (0.197785)
	mgm (0.180343)
	gul (0.177588)
	rec (0.17307)
	fhi (0.169578)
	mga (0.160205)
	fco (0.157208)
	liv (0.146284)
	lin (0.145603)
	hyp (0.142837)
	pty (0.142714)
	cst (0.140036)
	hlv (0.139256)
	ssp (0.13552)
	nmm (0.132802)
	kid (0.129735)
	ova (0.129132)
	thg (0.126791)
	ese (0.126502)
	eru (0.120048)
	jca (0.11396)