Ss1.1-Pig4-TMW8037P02.5
|
GTCTGGCCTGGGCGCCGGAGGAACTGCCGCCCTCGCCGCTGCCACCACCAACCTGTCCTC
GGTGCCCCGTGCCCTGTCCCCATCTAGTCATGACCCTGCGCCCCTCATTTCTGCCCCTCC
GGCTGCTGCTGCTGCTGCTGCTCAGTGGGGCGATGTGCCGGGCTGAGGCTGGGTTCGAAA
CCGAAAGTCCCGTCCGGACCCTGCAAGTGGAGACCCTGGTGGAGCCCCCTGAACCGTGTG
CTGAGCCGGCTGCCTTTGGAGACACGCTGCACATACACTACTCGGGCAGCTTGGTAGATG
GCCGCATCTTTGACACTTCTCTGAGCAGAGACCCTCTGGTTATAGAACTTGGTCAAAAGC
AGGTGATACCAGGTCTGGAGCAGAGCCTTCTAGACATGTGTGTGGGAGAGAAGCGAAGGG
TAATCATCCCTTCTCATCTGGCCTATGGCAAACGGGGATTCCCGCCATCTATCCCAGCGG
ATGCAGAGCTGCATTTTGACGTGGAGCTGATTGCACTCATCCGAGCCAACTACTGGCAAA
AGCTGGTGAAGGGCATTTTGCCTCTGGTAGGCATGGCCATGGTGCCAGCCCTCTTGGGCC
TCATTGGGTATCACCTATACAAAAAGGCCAGCAGACCTAAAGTCTCCAAAAAGAAGCTCA
AGGAAGAGAAACGAAACAAGAGCAAAAAGAAATAATAAATAATAGTAATTTTTAAAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GTCTGGCCTGGGCGCCGGAGGAACTGCCGCCCTCGCCGCTGCCACCACCAACCTGTCCTC
GGTGCCCCGTGCCCTGTCCCCATCTAGTCATGACCCTGCGCCCCTCATTTCTGCCCCTCC
GGCTGCTGCTGCTGCTGCTGCTCAGTGGGGCGATGTGCCGGGCTGAGGCTGGGTTCGAAA
CCGAAAGTCCCGTCCGGACCCTGCAAGTGGAGACCCTGGTGGAGCCCCCTGAACCGTGTG
CTGAGCCGGCTGCCTTTGGAGACACGCTGCACATACACTACTCGGGCAGCTTGGTAGATG
GCCGCATCTTTGACACTTCTCTGAGCAGAGACCCTCTGGTTATAGAACTTGGTCAAAAGC
AGGTGATACCAGGTCTGGAGCAGAGCCTTCTAGACATGTGTGTGGGAGAGAAGCGAAGGG
TAATCATCCCTTCTCATCTGGCCTATGGCAAACGGGGATTCCCGCCATCTATCCCAGCGG
ATGCAGAGCTGCATTTTGACGTGGAGCTGATTGCACTCATCCGAGCCAACTACTGGCAAA
AGCTGGTGAAGGGCATTTTGCCTCTGGTAGGCATGGCCATGGTGCCAGCCCTCTTGGGCC
TCATTGGGTATCACCTATACAAAAAGGCCAGCAGACCTAAAGTCTCCAAAAAGAAGCTCA
AGGAAGAGAAACGAAACAAGAGCAAAAAGAAATAATAAATAATAGTAATTTTTAAAAAAA
AAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
1-221, gnl|bosTau2|chr5 (26203103-26203327) |
|
1-221, gnl|canFam2|chr27 (8646674-8646423) |
|
1-221, gnl|hg17|chr12 (47605319-47605587) |
|
1-221, gnl|Hg17|chr12 (47605569-47605347) |
|
1-221, gnl|mm7|chr15 (98713419-98713694) |
|
1-221, gnl|Mm7|chr15 (98713673-98713455) |
|
1-221, gnl|panTro1|chr10 (48778444-48778709) |
|
1-221, gnl|rheMac2|chr11 (46050693-46050970) |
|
1-221, gnl|rn3|chr7 (137570601-137570870) |
| |
|
474-703, gnl|bosTau2|chr5 (26206328-26206557) |
|
474-703, gnl|Hg17|chr12 (47602257-47602026) |
|
474-703, gnl|Mm7|chr15 (98710108-98709879) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-221, gnl|bosTau2|chr5 (26203103-26203327) |
|
1-221, gnl|canFam2|chr27 (8646674-8646423) |
|
1-221, gnl|hg17|chr12 (47605319-47605587) |
|
1-221, gnl|Hg17|chr12 (47605569-47605347) |
|
1-221, gnl|mm7|chr15 (98713419-98713694) |
|
1-221, gnl|Mm7|chr15 (98713673-98713455) |
|
1-221, gnl|panTro1|chr10 (48778444-48778709) |
|
1-221, gnl|rheMac2|chr11 (46050693-46050970) |
|
1-221, gnl|rn3|chr7 (137570601-137570870) |
| |
|
474-703, gnl|bosTau2|chr5 (26206328-26206557) |
|
474-703, gnl|Hg17|chr12 (47602257-47602026) |
|
474-703, gnl|Mm7|chr15 (98710108-98709879) |
|
pty (0.999001) |
|
cga (0.558191) |
|
mcp (0.511945) |
|
cje (0.495704) |
|
pgl (0.473934) |
|
fat (0.442282) |
|
ute (0.398353) |
|
nep (0.36785) |
|
csp (0.322373) |
|
cte (0.29274) |
|
nca (0.273748) |
|
thg (0.253582) |
|
ese (0.253004) |
|
tes (0.207814) |
|
eje (0.197668) |
|
col (0.195008) |
|
sag (0.182715) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
eye (0.170503) |
|
cut (0.169924) |
|
nje (0.16592) |
|
cli (0.152812) |
|
eli (0.151814) |
|
cag (0.151194) |
|
csk (0.140746) |
|
cst (0.140036) |
|
che (0.136314) |
|
nmm (0.132802) |
|
cov (0.132153) |
|
ret (0.128733) |
|
eru (0.120048) |
|
jca (0.11396) |
|
spc (0.113366) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
|
pty (0.999001) |
|
cga (0.558191) |
|
mcp (0.511945) |
|
cje (0.495704) |
|
pgl (0.473934) |
|
fat (0.442282) |
|
ute (0.398353) |
|
nep (0.36785) |
|
csp (0.322373) |
|
cte (0.29274) |
|
nca (0.273748) |
|
thg (0.253582) |
|
ese (0.253004) |
|
tes (0.207814) |
|
eje (0.197668) |
|
col (0.195008) |
|
sag (0.182715) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
eye (0.170503) |
|
cut (0.169924) |
|
nje (0.16592) |
|
cli (0.152812) |
|
eli (0.151814) |
|
cag (0.151194) |
|
csk (0.140746) |
|
cst (0.140036) |
|
che (0.136314) |
|
nmm (0.132802) |
|
cov (0.132153) |
|
ret (0.128733) |
|
eru (0.120048) |
|
jca (0.11396) |
|
spc (0.113366) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
