Non-Coding RNA Search

Ss1.1-Pig4-TMW8037P03.3

Sequence:


               
               TGCACCGCGCCGCCGCCATTTTGTGTCCGAGCCTGTGGAGCGATTAAACCGTGCGCGGAG
CTGCTTCTTTGGCGGCAGCGGCGGCGGCGGCAGCCCGTGCGGGTGCGCGGAGCTGGCTAG
AGACGCCGGGTGGCCGGAGCGGTGGAGCGGCGGCGGAGCGAGCGCTGCGGGGGGTGTGGC
GCGGAGAATGGTAGCAGACCTGGGGCCAAAGAACAAGATGCAGTAGTGGACAGATTGCTG
ACCAGGGGATTGAGAACTGAGTTCTGTTTGCCCTCCTCAAACTGACTTTGCAACCACGGA
GAGGAAGGGGAAATGGAAGGTGAGGCGGTTGAAGCCATTGTGGAAGAGTCTGAAACTTTC
ATTAAAGGAAAGGAGAGAAAGACTTACCAGAGACGCCGGGAAGGGGGCCAGGAAGAGGAC
ACTTGCCATCTACCCCAGAACCAGACTGATGGGGGTGAGGTGGTCCAGGATGTCAATAGT
AGTGTACAGATGGTAATGATGGAACAGCTGGATCCTACCCTTCTTCAGATGAAGACTGAA
GTAATGGAGGGTGCAGTTGCACCAGAAACGGAGGCTGCTGTGGACGATACCCAGATTATA
ACCTTGCAGGTTGTAAATATGGAGGAACAGCCTATAAACATAGGAGAGCTGCAGCTTGTG
CAAGTACCCGTTCCTGTGACAGTACCTGTTGCTACCACTTCAGTAGAAGAACTTCAGGGG
GCTTATGAGAATGAAGTGTCTAAAGAGGGCCTTGCAGAAAGTGAACCCATGATATGTCAC
ACCTTGCCTTTGCCTGAAGGGTTTCAAGTGGTAAAAGTGGGGGCCAATGGAGAGGTGGAG
ACACTAGAACAAGGGGAACTTCCACCTCAGGAAGATCCTAGTTGGCAGAAAGACCCAGAC
TATCAGCCACCAGCCAAAAAAACAAAGAAAACCAAAAAGAGCAAATTGCGTTACACAGAG
GAGGGCAAAGATGTGGATGTATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCACCGCGCCGCCGCCATTTTGTGTCCGAGCCTGTGGAGCGATTAAACCGTGCGCGGAG
CTGCTTCTTTGGCGGCAGCGGCGGCGGCGGCAGCCCGTGCGGGTGCGCGGAGCTGGCTAG
AGACGCCGGGTGGCCGGAGCGGTGGAGCGGCGGCGGAGCGAGCGCTGCGGGGGGTGTGGC
GCGGAGAATGGTAGCAGACCTGGGGCCAAAGAACAAGATGCAGTAGTGGACAGATTGCTG
ACCAGGGGATTGAGAACTGAGTTCTGTTTGCCCTCCTCAAACTGACTTTGCAACCACGGA
GAGGAAGGGGAAATGGAAGGTGAGGCGGTTGAAGCCATTGTGGAAGAGTCTGAAACTTTC
ATTAAAGGAAAGGAGAGAAAGACTTACCAGAGACGCCGGGAAGGGGGCCAGGAAGAGGAC
ACTTGCCATCTACCCCAGAACCAGACTGATGGGGGTGAGGTGGTCCAGGATGTCAATAGT
AGTGTACAGATGGTAATGATGGAACAGCTGGATCCTACCCTTCTTCAGATGAAGACTGAA
GTAATGGAGGGTGCAGTTGCACCAGAAACGGAGGCTGCTGTGGACGATACCCAGATTATA
ACCTTGCAGGTTGTAAATATGGAGGAACAGCCTATAAACATAGGAGAGCTGCAGCTTGTG
CAAGTACCCGTTCCTGTGACAGTACCTGTTGCTACCACTTCAGTAGAAGAACTTCAGGGG
GCTTATGAGAATGAAGTGTCTAAAGAGGGCCTTGCAGAAAGTGAACCCATGATATGTCAC
ACCTTGCCTTTGCCTGAAGGGTTTCAAGTGGTAAAAGTGGGGGCCAATGGAGAGGTGGAG
ACACTAGAACAAGGGGAACTTCCACCTCAGGAAGATCCTAGTTGGCAGAAAGACCCAGAC
TATCAGCCACCAGCCAAAAAAACAAAGAAAACCAAAAAGAGCAAATTGCGTTACACAGAG
GAGGGCAAAGATGTGGATGTATCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q865P7_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q865P7_BOVIN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               341-460, - strand, RNAz p=0.896002
               

               
               741-900, - strand, RNAz p=0.985236

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               341-460, - strand, RNAz p=0.896002
               

               
               741-900, - strand, RNAz p=0.985236

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-141, gnl|bosTau2|chr27 (27192758-27192618)
               

               
               1-141, gnl|Hg17|chr16 (66153943-66154082)
               

               
               1-141, gnl|Mm7|chr8 (104235173-104235314)
               


               
               302-984, gnl|bosTau2|chr18 (15194522-15193840)
               

               
               302-984, gnl|Hg17|chr16 (66202226-66202908)
               

               
               302-984, gnl|Mm7|chr8 (104262391-104263073)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-141, gnl|bosTau2|chr27 (27192758-27192618)
               

               
               1-141, gnl|Hg17|chr16 (66153943-66154082)
               

               
               1-141, gnl|Mm7|chr8 (104235173-104235314)
               


               
               302-984, gnl|bosTau2|chr18 (15194522-15193840)
               

               
               302-984, gnl|Hg17|chr16 (66202226-66202908)
               

               
               302-984, gnl|Mm7|chr8 (104262391-104263073)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ova (0.129132)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.129132)

	341-460, - strand, RNAz p=0.896002
	741-900, - strand, RNAz p=0.985236

	1-141, gnl\|bosTau2\|chr27 (27192758-27192618)
	1-141, gnl\|Hg17\|chr16 (66153943-66154082)
	1-141, gnl\|Mm7\|chr8 (104235173-104235314)

	302-984, gnl\|bosTau2\|chr18 (15194522-15193840)
	302-984, gnl\|Hg17\|chr16 (66202226-66202908)
	302-984, gnl\|Mm7\|chr8 (104262391-104263073)