Non-Coding RNA Search

Ss1.1-Pig4-TMW8037P04.3

Sequence:


               
               ACCTATCAGAGGAAGTACCACCACCTCCATTCCTCCTTCCTCCTCCTCTTTTTACCAGGC
TCTCAGACTTAATTAACAAAGGTGTTTATATTGCTGGTCTCATCACTCGACCCAAAGGTG
TTTATATTGCTGGTCTCATCTTCTTTGGCGTAGTTAGCACTTCCCTGTTAGGCATTTCCC
TATCTCTTCCTGTGGCTAGATGAGGTGGGTCTTTACCTGACGGGAAACACAAACCCCACT
TTGTGGCCAAGGCTCTGTGTTCTTTCTTCTCCACTTCCCAAGAGAAAAAGGTTTCCAGTT
TATGAGAAGCAAGTGCTGGGCAAACAAAGCTCTTGATTGAGCCTCTTACCTCTCCAGTGC
TCCTCATCTGATTCAGAAGCATCACTTTTTTTGATAACCGGCACTGGAAAATGAAATCAT
CTGTTTGAAGTGAAGGGACTCATATTTCTTTGCTTTCAGCCTATGTAAATATTTAAATAA
TACAGTATTAACATTTTTGTGCTGCTTCCCATTAGCTTGTAGATTGAGCCATACTCTTCT
CTGGCTGCCTCTCTACCTTCCTGGGGGCAGTGTTCTTTAACTTCCAGAATAGTGGAATAG
GTTTTAAAACTAAAAAAAAAAAAACAAAACAAAACAAAAAACAAAATAACCTATCCTTAC
TTAAAAACATAACAGATTGTATTTAACTTTATCACATATGATAGAGATATATATGCTGTA
AAATTAGGGAAAGGACTTTCTAATAAACCAATGATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCTATCAGAGGAAGTACCACCACCTCCATTCCTCCTTCCTCCTCCTCTTTTTACCAGGC
TCTCAGACTTAATTAACAAAGGTGTTTATATTGCTGGTCTCATCACTCGACCCAAAGGTG
TTTATATTGCTGGTCTCATCTTCTTTGGCGTAGTTAGCACTTCCCTGTTAGGCATTTCCC
TATCTCTTCCTGTGGCTAGATGAGGTGGGTCTTTACCTGACGGGAAACACAAACCCCACT
TTGTGGCCAAGGCTCTGTGTTCTTTCTTCTCCACTTCCCAAGAGAAAAAGGTTTCCAGTT
TATGAGAAGCAAGTGCTGGGCAAACAAAGCTCTTGATTGAGCCTCTTACCTCTCCAGTGC
TCCTCATCTGATTCAGAAGCATCACTTTTTTTGATAACCGGCACTGGAAAATGAAATCAT
CTGTTTGAAGTGAAGGGACTCATATTTCTTTGCTTTCAGCCTATGTAAATATTTAAATAA
TACAGTATTAACATTTTTGTGCTGCTTCCCATTAGCTTGTAGATTGAGCCATACTCTTCT
CTGGCTGCCTCTCTACCTTCCTGGGGGCAGTGTTCTTTAACTTCCAGAATAGTGGAATAG
GTTTTAAAACTAAAAAAAAAAAAACAAAACAAAACAAAAAACAAAATAACCTATCCTTAC
TTAAAAACATAACAGATTGTATTTAACTTTATCACATATGATAGAGATATATATGCTGTA
AAATTAGGGAAAGGACTTTCTAATAAACCAATGATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               532-651, + strand, RNAz p=0.862406

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               532-651, + strand, RNAz p=0.862406

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               109-756, gnl|bosTau2|chr19 (37875769-37876389)
               

               
               109-756, gnl|Hg17|chr17 (39828781-39828183)
               

               
               109-756, gnl|Mm7|chr11 (102585545-102584962)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               109-756, gnl|bosTau2|chr19 (37875769-37876389)
               

               
               109-756, gnl|Hg17|chr17 (39828781-39828183)
               

               
               109-756, gnl|Mm7|chr11 (102585545-102584962)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               hea (0.408998)
               

               
               sin (0.174948)
               

               
               med (0.116252)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.408998)
               

               
               sin (0.174948)
               

               
               med (0.116252)

	109-756, gnl\|bosTau2\|chr19 (37875769-37876389)
	109-756, gnl\|Hg17\|chr17 (39828781-39828183)
	109-756, gnl\|Mm7\|chr11 (102585545-102584962)