Ss1.1-Pig4-TMW8037P05.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACTTTACGCGTTCCGCTCGCCTCCAGGTTGCCAGTCTCGTCTCTTCTCGCCGTAGGCCG TGACGACATGAGCGGCAAAGAAGGTTCAGGAGGGTTCAGGAAAAGGAAGCATGACAATTT CCCACATAACCAAAGAAGAGAAGGGAAGGATCTTAATTCATCTTCACCTGTGATGTTGGC CTTCAAATCATTTCAGCAGGAACTTGATGCAAGACATGATAAATATGAGAGACTTGTGAA ACTTAGTCGGGATATCACTGTCGAAAGTAAAAGAACAATTTTTCTTCTCCATAGGATTAC AAGTGCTCCTGATATGGAAGAAATATTGACTGAATCAGAAATTAAATTGGATGGTGTCAG ACAAAAGATACTGCAAGTGGCCCAAGAGCTCTCTGGAGAGGACATGCATCAGTTCCATAG AGCTATCACGACAGGACTGCAGGAATACGTGGAGGCTGTCTCTTTTCAACACTTCATCAA AACACGATCACTCATCAGCATGGATGAAATTAACAAACAATTGATATTTTCAACAGAAGA AAATGGGAAAGAAAATAAGACTCCCCCCTCTGATGCACAGGATAAGCAGTGTGGTACCTG GAGCCTGAAACTCACACCTGTTGATTACCTTCTGGGAGTGGCTGATTTAACTGGAGAGTT GATGCGGATGTGTATTAACAGTGTCGGGAATGGGGACATTGACACCCCCTTTGAAGTGAG CCAGTTTTTACGTCAGGTTTATGATGGGTTTTCATTCATTGGCAATACTGGACCTTATGA GGTTTCCAAGAAGTTGTATACCTTGAAACAAAGTCTGGCCAAAGTGGAGAATGCTTGTTA TGCCTTGAAAGTCAGAGGTTCAGAAATTCCCAAACATATGCTGGCAGATGTCTTTTCAGT TAAAACAGAAATGATTGATCAAGAAGAGGGCATTTCTTAGAACCTTACTCAGTTGTTATT CTCTTAACTCATAAGAGAGACCAATTTGTAAGACTGTTATTTAGTATATCATTTGACTTT GTGGCTTTTACATAGAAATGTTTTCAGTTGTATTTGTTTAATTGTATACAGGCTGTACAT AAAATTACAGAAATGAATCATTTCTTATATCTTGTGAAAATTTGCATACAAATGTTTGCA TATAGGCCTGTTTGAACTTTTGCTGGCTCAACTTCATCATTTATCTTTGTAAATGTGAAC ATGCTTCAGAGTGCACTTTCTGCCATACCTGTGTTGATTTACTTTGTGTGAATTTTGGAG TGGTAGTATTTAGTGGAAGCCATTTATAATTTAAGGTGATGATTTCATTATATGTAGAAA AGGTTTTAGTTTTACATCTGGACTTGAGCTTCCTGTTCAAATTTCTTGGTAATCTTGTGC CAAGCCTCCAAAATAGGCTTATTCCATAGAACAAGGATTAAAAATTAAGTTATCAGTATA CTTTAATTTTATGAGATGTTGTAGTGAGAAATCATATTATAGTCTGGCTAAATTAGGCCA TTTTGAATCCATATGAAATAGCCTTCCAGAAAAATTGACCAATACCCCTGATGTTAGTTT CTGTATTTAAATTTTTGTCCCATCACAGATCTGATAGAGAGTTGGCACTAACATTGTAAT ATTTTCCCTGGTGTTTGAGTTTAATTATACACTTGCACATACAACTGAAAAGCTAGTAGT GATTTTTGTTTTTGTTGTCATTATATTTCACTAGGCATGTTTGGAGGCTTTCCTAGTCTA ACACCTATAAGAAATTACATATAAATAATTATAATGAAATTTTGAAAGTTTTGAAGTATA AAGTTAATCCAAATCTTTATAGTTGTTCAGTTGTGTTAATTGATAGTATAAAAAGTTGCC AAAGAAGAGTTATCACGTACAATTCAGCAATAAGACAATTGTCAACACAGTTGGGAATAA CAAGTAGTATCACTAGTCATAGAAGTAGTCTCACTAGTAATATTTAGAATTGGAATTTGC CTATTAAAATTAGTAATAGATTATTCCCTATGATGTGAAACTGACTTGAGCATGCCACTG TTGGCTGACAAACTAGACGTTTCCATGGGGTTTTGTGAGTTTTGAGAATCTAGATACCGG ATTTTATTTTTGGAAAGAGTAGCAGCTCTGTTTGCAAGGGCTTTTACTTGAAAGTGTAAT TTTCCAAAAAATATCACCTAAAGGAAAATAAAATATATACATGCCTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACTTTACGCGTTCCGCTCGCCTCCAGGTTGCCAGTCTCGTCTCTTCTCGCCGTAGGCCG TGACGACATGAGCGGCAAAGAAGGTTCAGGAGGGTTCAGGAAAAGGAAGCATGACAATTT CCCACATAACCAAAGAAGAGAAGGGAAGGATCTTAATTCATCTTCACCTGTGATGTTGGC CTTCAAATCATTTCAGCAGGAACTTGATGCAAGACATGATAAATATGAGAGACTTGTGAA ACTTAGTCGGGATATCACTGTCGAAAGTAAAAGAACAATTTTTCTTCTCCATAGGATTAC AAGTGCTCCTGATATGGAAGAAATATTGACTGAATCAGAAATTAAATTGGATGGTGTCAG ACAAAAGATACTGCAAGTGGCCCAAGAGCTCTCTGGAGAGGACATGCATCAGTTCCATAG AGCTATCACGACAGGACTGCAGGAATACGTGGAGGCTGTCTCTTTTCAACACTTCATCAA AACACGATCACTCATCAGCATGGATGAAATTAACAAACAATTGATATTTTCAACAGAAGA AAATGGGAAAGAAAATAAGACTCCCCCCTCTGATGCACAGGATAAGCAGTGTGGTACCTG GAGCCTGAAACTCACACCTGTTGATTACCTTCTGGGAGTGGCTGATTTAACTGGAGAGTT GATGCGGATGTGTATTAACAGTGTCGGGAATGGGGACATTGACACCCCCTTTGAAGTGAG CCAGTTTTTACGTCAGGTTTATGATGGGTTTTCATTCATTGGCAATACTGGACCTTATGA GGTTTCCAAGAAGTTGTATACCTTGAAACAAAGTCTGGCCAAAGTGGAGAATGCTTGTTA TGCCTTGAAAGTCAGAGGTTCAGAAATTCCCAAACATATGCTGGCAGATGTCTTTTCAGT TAAAACAGAAATGATTGATCAAGAAGAGGGCATTTCTTAGAACCTTACTCAGTTGTTATT CTCTTAACTCATAAGAGAGACCAATTTGTAAGACTGTTATTTAGTATATCATTTGACTTT GTGGCTTTTACATAGAAATGTTTTCAGTTGTATTTGTTTAATTGTATACAGGCTGTACAT AAAATTACAGAAATGAATCATTTCTTATATCTTGTGAAAATTTGCATACAAATGTTTGCA TATAGGCCTGTTTGAACTTTTGCTGGCTCAACTTCATCATTTATCTTTGTAAATGTGAAC ATGCTTCAGAGTGCACTTTCTGCCATACCTGTGTTGATTTACTTTGTGTGAATTTTGGAG TGGTAGTATTTAGTGGAAGCCATTTATAATTTAAGGTGATGATTTCATTATATGTAGAAA AGGTTTTAGTTTTACATCTGGACTTGAGCTTCCTGTTCAAATTTCTTGGTAATCTTGTGC CAAGCCTCCAAAATAGGCTTATTCCATAGAACAAGGATTAAAAATTAAGTTATCAGTATA CTTTAATTTTATGAGATGTTGTAGTGAGAAATCATATTATAGTCTGGCTAAATTAGGCCA TTTTGAATCCATATGAAATAGCCTTCCAGAAAAATTGACCAATACCCCTGATGTTAGTTT CTGTATTTAAATTTTTGTCCCATCACAGATCTGATAGAGAGTTGGCACTAACATTGTAAT ATTTTCCCTGGTGTTTGAGTTTAATTATACACTTGCACATACAACTGAAAAGCTAGTAGT GATTTTTGTTTTTGTTGTCATTATATTTCACTAGGCATGTTTGGAGGCTTTCCTAGTCTA ACACCTATAAGAAATTACATATAAATAATTATAATGAAATTTTGAAAGTTTTGAAGTATA AAGTTAATCCAAATCTTTATAGTTGTTCAGTTGTGTTAATTGATAGTATAAAAAGTTGCC AAAGAAGAGTTATCACGTACAATTCAGCAATAAGACAATTGTCAACACAGTTGGGAATAA CAAGTAGTATCACTAGTCATAGAAGTAGTCTCACTAGTAATATTTAGAATTGGAATTTGC CTATTAAAATTAGTAATAGATTATTCCCTATGATGTGAAACTGACTTGAGCATGCCACTG TTGGCTGACAAACTAGACGTTTCCATGGGGTTTTGTGAGTTTTGAGAATCTAGATACCGG ATTTTATTTTTGGAAAGAGTAGCAGCTCTGTTTGCAAGGGCTTTTACTTGAAAGTGTAAT TTTCCAAAAAATATCACCTAAAGGAAAATAAAATATATACATGCCTAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1341-1440, + strand, RNAz p=0.972263 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1341-1440, + strand, RNAz p=0.972263 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BX537610, + |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 81-188, gnl|bosTau2|chr28 (1592052-1591945) | |
| 81-188, gnl|canFam2|chr4 (10967200-10967068) | |
| 81-188, gnl|dasNov1|scaffold_110867 (4096-4228) | |
| 81-188, gnl|echTel1|scaffold_320609 (2737-2585) | |
| 81-188, gnl|galGal2|chr3 (35802978-35802826) | |
| 81-188, gnl|hg17|chr1 (227971719-227971851) | |
| 81-188, gnl|Hg17|chr1 (227971733-227971840) | |
| 81-188, gnl|loxAfr1|scaffold_436 (51361-51493) | |
| 81-188, gnl|mm7|chr8 (123600891-123601023) | |
| 81-188, gnl|Mm7|chr8 (123600905-123601012) | |
| 81-188, gnl|monDom2|scaffold_13 (55952438-55952307) | |
| 81-188, gnl|oryCun1|scaffold_175452 (48031-47899) | |
| 81-188, gnl|panTro1|chr1 (211836226-211836358) | |
| 81-188, gnl|rheMac2|chr1 (225418784-225418652) | |
| 81-188, gnl|rn3|chr19_random (555508-555376) | |
| 189-303, gnl|bosTau2|chr28 (1589048-1588934) | |
| 189-303, gnl|canFam2|chr4 (10964082-10963964) | |
| 189-303, gnl|danRer3|chr13 (47168907-47169025) | |
| 189-303, gnl|dasNov1|scaffold_248476 (1218-1336) | |
| 189-303, gnl|echTel1|scaffold_166109 (3024-2906) | |
| 189-303, gnl|fr1|chrUn (297759460-297759342) | |
| 189-303, gnl|galGal2|chr3 (35800977-35800859) | |
| 189-303, gnl|hg17|chr1 (227979693-227979811) | |
| 189-303, gnl|Hg17|chr1 (227979694-227979808) | |
| 189-303, gnl|loxAfr1|scaffold_436 (56743-56861) | |
| 189-303, gnl|mm7|chr8 (123603052-123603170) | |
| 189-303, gnl|Mm7|chr8 (123603053-123603167) | |
| 189-303, gnl|monDom2|scaffold_13 (55937329-55937211) | |
| 189-303, gnl|oryCun1|scaffold_109845 (942-1060) | |
| 189-303, gnl|panTro1|chr1 (211844201-211844319) | |
| 189-303, gnl|rheMac2|chr1 (225411199-225411081) | |
| 189-303, gnl|rn3|chr19_random (554958-554840) | |
| 189-303, gnl|tetNig1|chr17 (1891856-1891738) | |
| 189-303, gnl|xenTro1|scaffold_986 (178853-178735) | |
| 432-562, gnl|bosTau2|chr28 (1562007-1561877) | |
| 432-562, gnl|canFam2|chr4 (10943256-10943117) | |
| 432-562, gnl|danRer3|chrNA (175134178-175134042) | |
| 432-562, gnl|dasNov1|scaffold_34763 (1727-1855) | |
| 432-562, gnl|echTel1|scaffold_231369 (10385-10246) | |
| 432-562, gnl|galGal2|chr3 (35785309-35785179) | |
| 432-562, gnl|hg17|chr1 (228003597-228003736) | |
| 432-562, gnl|Hg17|chr1 (228003606-228003736) | |
| 432-562, gnl|loxAfr1|scaffold_436 (90265-90404) | |
| 432-562, gnl|mm7|chr8 (123616158-123616293) | |
| 432-562, gnl|Mm7|chr8 (123616163-123616293) | |
| 432-562, gnl|monDom2|scaffold_13 (55919881-55919742) | |
| 432-562, gnl|oryCun1|scaffold_178296 (40987-41104) | |
| 432-562, gnl|panTro1|chr1 (211868087-211868226) | |
| 432-562, gnl|rheMac2|chr1 (225385836-225385697) | |
| 432-562, gnl|rn3|chr19_random (546334-546199) | |
| 432-562, gnl|xenTro1|scaffold_986 (171240-171114) | |
| 567-2208, gnl|bosTau2|chr28 (1558261-1556604) | |
| 567-2208, gnl|Hg17|chr1 (228007013-228009001) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 81-188, gnl|bosTau2|chr28 (1592052-1591945) | |
| 81-188, gnl|canFam2|chr4 (10967200-10967068) | |
| 81-188, gnl|dasNov1|scaffold_110867 (4096-4228) | |
| 81-188, gnl|echTel1|scaffold_320609 (2737-2585) | |
| 81-188, gnl|galGal2|chr3 (35802978-35802826) | |
| 81-188, gnl|hg17|chr1 (227971719-227971851) | |
| 81-188, gnl|Hg17|chr1 (227971733-227971840) | |
| 81-188, gnl|loxAfr1|scaffold_436 (51361-51493) | |
| 81-188, gnl|mm7|chr8 (123600891-123601023) | |
| 81-188, gnl|Mm7|chr8 (123600905-123601012) | |
| 81-188, gnl|monDom2|scaffold_13 (55952438-55952307) | |
| 81-188, gnl|oryCun1|scaffold_175452 (48031-47899) | |
| 81-188, gnl|panTro1|chr1 (211836226-211836358) | |
| 81-188, gnl|rheMac2|chr1 (225418784-225418652) | |
| 81-188, gnl|rn3|chr19_random (555508-555376) | |
| 189-303, gnl|bosTau2|chr28 (1589048-1588934) | |
| 189-303, gnl|canFam2|chr4 (10964082-10963964) | |
| 189-303, gnl|danRer3|chr13 (47168907-47169025) | |
| 189-303, gnl|dasNov1|scaffold_248476 (1218-1336) | |
| 189-303, gnl|echTel1|scaffold_166109 (3024-2906) | |
| 189-303, gnl|fr1|chrUn (297759460-297759342) | |
| 189-303, gnl|galGal2|chr3 (35800977-35800859) | |
| 189-303, gnl|hg17|chr1 (227979693-227979811) | |
| 189-303, gnl|Hg17|chr1 (227979694-227979808) | |
| 189-303, gnl|loxAfr1|scaffold_436 (56743-56861) | |
| 189-303, gnl|mm7|chr8 (123603052-123603170) | |
| 189-303, gnl|Mm7|chr8 (123603053-123603167) | |
| 189-303, gnl|monDom2|scaffold_13 (55937329-55937211) | |
| 189-303, gnl|oryCun1|scaffold_109845 (942-1060) | |
| 189-303, gnl|panTro1|chr1 (211844201-211844319) | |
| 189-303, gnl|rheMac2|chr1 (225411199-225411081) | |
| 189-303, gnl|rn3|chr19_random (554958-554840) | |
| 189-303, gnl|tetNig1|chr17 (1891856-1891738) | |
| 189-303, gnl|xenTro1|scaffold_986 (178853-178735) | |
| 432-562, gnl|bosTau2|chr28 (1562007-1561877) | |
| 432-562, gnl|canFam2|chr4 (10943256-10943117) | |
| 432-562, gnl|danRer3|chrNA (175134178-175134042) | |
| 432-562, gnl|dasNov1|scaffold_34763 (1727-1855) | |
| 432-562, gnl|echTel1|scaffold_231369 (10385-10246) | |
| 432-562, gnl|galGal2|chr3 (35785309-35785179) | |
| 432-562, gnl|hg17|chr1 (228003597-228003736) | |
| 432-562, gnl|Hg17|chr1 (228003606-228003736) | |
| 432-562, gnl|loxAfr1|scaffold_436 (90265-90404) | |
| 432-562, gnl|mm7|chr8 (123616158-123616293) | |
| 432-562, gnl|Mm7|chr8 (123616163-123616293) | |
| 432-562, gnl|monDom2|scaffold_13 (55919881-55919742) | |
| 432-562, gnl|oryCun1|scaffold_178296 (40987-41104) | |
| 432-562, gnl|panTro1|chr1 (211868087-211868226) | |
| 432-562, gnl|rheMac2|chr1 (225385836-225385697) | |
| 432-562, gnl|rn3|chr19_random (546334-546199) | |
| 432-562, gnl|xenTro1|scaffold_986 (171240-171114) | |
| 567-2208, gnl|bosTau2|chr28 (1558261-1556604) | |
| 567-2208, gnl|Hg17|chr1 (228007013-228009001) |
| Expressed library(ies): 27 entry(ies) | More info |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
| cbe (0.478469) | |
| lyg (0.399308) | |
| nje (0.33184) | |
| tbr (0.308356) | |
| ski (0.29347) | |
| liv (0.292569) | |
| lin (0.291206) | |
| kid (0.259471) | |
| ret (0.257467) | |
| sug (0.254582) | |
| ese (0.253004) | |
| tra (0.246184) | |
| pan (0.23596) | |
| aor (0.195274) | |
| gul (0.177588) | |
| nco (0.161734) | |
| mga (0.160205) | |
| lun (0.150489) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| ova (0.129132) | |
| thg (0.126791) | |
| cbl (0.114797) | |
| spc (0.113366) |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (0.478469) | |
| lyg (0.399308) | |
| nje (0.33184) | |
| tbr (0.308356) | |
| ski (0.29347) | |
| liv (0.292569) | |
| lin (0.291206) | |
| kid (0.259471) | |
| ret (0.257467) | |
| sug (0.254582) | |
| ese (0.253004) | |
| tra (0.246184) | |
| pan (0.23596) | |
| aor (0.195274) | |
| gul (0.177588) | |
| nco (0.161734) | |
| mga (0.160205) | |
| lun (0.150489) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| ova (0.129132) | |
| thg (0.126791) | |
| cbl (0.114797) | |
| spc (0.113366) |