Ss1.1-Pig4-TMW8037P07.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATCCTACATATATAAAGATGGAAGAAGGAGACCTCCCAACAAGATTAAAGTTATTGGAA GACTCAGTCCCTTTTGACAGTCCTTTGCTGATTGCTTATGCTACTCGATTGTATGAGAAA TTTGGAGAATCTGCCCTTCGATCCTTCATCAGATTTTACCCATCCATTTTGCCTTCGGAT GTCATGCAACTTTGTCATCATCATCCTGCTGAGTTTTTGGCCTATTTAGACAGTCTGGTG AAATCAAGGCCTGAAGATCAACGGCCATCCTTCCTTGAGTCCCTTCTGCAACCAGAGTCT TTAAGATTGGATTGGCTGCTGTTGGCCGTGTCCCACCATGCTCCCCCCAGCACCAGCACT ATGGACGATGAAGGAGACCCCAGGCCTCATTCTCACTTGTTTTCCTGGGGTTACAGTCAA TTAATCCTCCTTCTAATTAAACTTCCTGCAGATTTTACAACAAAAGAGAAAATGACTGAC ATTTGTAAGTCTCATGGTTTCTGGCCTGGATATCTTATTCTCTGTTTGGAGCTGGGGAGA AGAAGAGAGGCCTTCACCAACATTGTATATCTGAATGATATGAGCCTGATGGAAGGGGAC AGTGGTTGGATCCCGGAGACGGTGGAGGAATGGAAGCTTCTCCTGCACCTGGTACAGAAC AAGAGCACCAAGCCAGCCCCACAGAAGCCACCCAATGGGAACTTCAGCGATGGGCCTTCT CCTATCAATGTGGAGAATGTGGCACTCCTGTTAGCTAAGGCCATGGGCCCCGATCGAGCC TGGTCATTGCTAGAGGAATGTGGTTTGACCCTCGAGCTATCAGAGAGGTTTACCAGAACC TGTGATATCCTGAGGATTGCCGAGAAAAGGCAGAGAGCCTTGATACAAAGCATGCTTGAA AAATGTGATCGGTTTCTCTGGTCTCAGCAGGCATAGTTGAAGAAGATTCAGCAGGGTGTC AGGACATTTTCAGGAAAATGGAATCATGCTCCTGAACCTTCTGAATGCATTTGTTATTGA AGAAAAGGCCCCACCTGAGATCCCTGCCGCCTTATTGGAGCACTTTTGTCCATGTCTTAT AATGTCTGCATTTGTGGCTTTATCTGTGACTTCAGTGATTTTTGACTAAAGTTGAATTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATCCTACATATATAAAGATGGAAGAAGGAGACCTCCCAACAAGATTAAAGTTATTGGAA GACTCAGTCCCTTTTGACAGTCCTTTGCTGATTGCTTATGCTACTCGATTGTATGAGAAA TTTGGAGAATCTGCCCTTCGATCCTTCATCAGATTTTACCCATCCATTTTGCCTTCGGAT GTCATGCAACTTTGTCATCATCATCCTGCTGAGTTTTTGGCCTATTTAGACAGTCTGGTG AAATCAAGGCCTGAAGATCAACGGCCATCCTTCCTTGAGTCCCTTCTGCAACCAGAGTCT TTAAGATTGGATTGGCTGCTGTTGGCCGTGTCCCACCATGCTCCCCCCAGCACCAGCACT ATGGACGATGAAGGAGACCCCAGGCCTCATTCTCACTTGTTTTCCTGGGGTTACAGTCAA TTAATCCTCCTTCTAATTAAACTTCCTGCAGATTTTACAACAAAAGAGAAAATGACTGAC ATTTGTAAGTCTCATGGTTTCTGGCCTGGATATCTTATTCTCTGTTTGGAGCTGGGGAGA AGAAGAGAGGCCTTCACCAACATTGTATATCTGAATGATATGAGCCTGATGGAAGGGGAC AGTGGTTGGATCCCGGAGACGGTGGAGGAATGGAAGCTTCTCCTGCACCTGGTACAGAAC AAGAGCACCAAGCCAGCCCCACAGAAGCCACCCAATGGGAACTTCAGCGATGGGCCTTCT CCTATCAATGTGGAGAATGTGGCACTCCTGTTAGCTAAGGCCATGGGCCCCGATCGAGCC TGGTCATTGCTAGAGGAATGTGGTTTGACCCTCGAGCTATCAGAGAGGTTTACCAGAACC TGTGATATCCTGAGGATTGCCGAGAAAAGGCAGAGAGCCTTGATACAAAGCATGCTTGAA AAATGTGATCGGTTTCTCTGGTCTCAGCAGGCATAGTTGAAGAAGATTCAGCAGGGTGTC AGGACATTTTCAGGAAAATGGAATCATGCTCCTGAACCTTCTGAATGCATTTGTTATTGA AGAAAAGGCCCCACCTGAGATCCCTGCCGCCTTATTGGAGCACTTTTGTCCATGTCTTAT AATGTCTGCATTTGTGGCTTTATCTGTGACTTCAGTGATTTTTGACTAAAGTTGAATTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 683-802, + strand, RNAz p=0.825555 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 683-802, + strand, RNAz p=0.825555 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 107-264, gnl|bosTau2|chr29 (18515394-18515551) | |
| 107-264, gnl|canFam2|chr21 (43925451-43925647) | |
| 107-264, gnl|dasNov1|scaffold_7177 (59266-59103) | |
| 107-264, gnl|echTel1|scaffold_320861 (91219-91023) | |
| 107-264, gnl|fr1|chrUn (153236654-153236499) | |
| 107-264, gnl|galGal2|chr5 (10057841-10058047) | |
| 107-264, gnl|hg17|chr11 (18265629-18265826) | |
| 107-264, gnl|Hg17|chr11 (18265814-18265657) | |
| 107-264, gnl|loxAfr1|scaffold_1205 (113464-113267) | |
| 107-264, gnl|mm7|chr7 (42945109-42945306) | |
| 107-264, gnl|Mm7|chr7 (42945294-42945137) | |
| 107-264, gnl|monDom2|scaffold_10 (53254849-53254670) | |
| 107-264, gnl|oryCun1|scaffold_172798 (52013-52223) | |
| 107-264, gnl|panTro1|chr9 (18497309-18497506) | |
| 107-264, gnl|rheMac2|chr14 (53613084-53612887) | |
| 107-264, gnl|rn3|chr1 (97399379-97399576) | |
| 107-264, gnl|tetNig1|chr13 (10989702-10989858) | |
| 107-264, gnl|xenTro1|scaffold_457 (1006218-1006037) | |
| 381-497, gnl|bosTau2|chr29 (18518204-18518320) | |
| 381-497, gnl|canFam2|chr21 (43923284-43923417) | |
| 381-497, gnl|danRer3|chrNA (241888967-241888839) | |
| 381-497, gnl|dasNov1|scaffold_7177 (62156-62022) | |
| 381-497, gnl|echTel1|scaffold_320861 (93944-93810) | |
| 381-497, gnl|fr1|chrUn (153237042-153236924) | |
| 381-497, gnl|galGal2|chr5 (10056846-10056980) | |
| 381-497, gnl|hg17|chr11 (18263452-18263585) | |
| 381-497, gnl|Hg17|chr11 (18263585-18263469) | |
| 381-497, gnl|loxAfr1|scaffold_1205 (115127-114993) | |
| 381-497, gnl|mm7|chr7 (42943277-42943411) | |
| 381-497, gnl|Mm7|chr7 (42943413-42943295) | |
| 381-497, gnl|monDom2|scaffold_10 (53258995-53258861) | |
| 381-497, gnl|oryCun1|scaffold_172798 (49835-49969) | |
| 381-497, gnl|panTro1|chr9 (18495073-18495206) | |
| 381-497, gnl|rheMac2|chr14 (53615291-53615157) | |
| 381-497, gnl|rn3|chr1 (97397582-97397716) | |
| 381-497, gnl|tetNig1|chr13 (10989343-10989447) | |
| 381-497, gnl|xenTro1|scaffold_457 (1007475-1007342) | |
| 604-875, gnl|bosTau2|chr29 (18526933-18527204) | |
| 604-875, gnl|Hg17|chr11 (18260344-18260073) | |
| 604-875, gnl|Mm7|chr7 (42939415-42939144) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 107-264, gnl|bosTau2|chr29 (18515394-18515551) | |
| 107-264, gnl|canFam2|chr21 (43925451-43925647) | |
| 107-264, gnl|dasNov1|scaffold_7177 (59266-59103) | |
| 107-264, gnl|echTel1|scaffold_320861 (91219-91023) | |
| 107-264, gnl|fr1|chrUn (153236654-153236499) | |
| 107-264, gnl|galGal2|chr5 (10057841-10058047) | |
| 107-264, gnl|hg17|chr11 (18265629-18265826) | |
| 107-264, gnl|Hg17|chr11 (18265814-18265657) | |
| 107-264, gnl|loxAfr1|scaffold_1205 (113464-113267) | |
| 107-264, gnl|mm7|chr7 (42945109-42945306) | |
| 107-264, gnl|Mm7|chr7 (42945294-42945137) | |
| 107-264, gnl|monDom2|scaffold_10 (53254849-53254670) | |
| 107-264, gnl|oryCun1|scaffold_172798 (52013-52223) | |
| 107-264, gnl|panTro1|chr9 (18497309-18497506) | |
| 107-264, gnl|rheMac2|chr14 (53613084-53612887) | |
| 107-264, gnl|rn3|chr1 (97399379-97399576) | |
| 107-264, gnl|tetNig1|chr13 (10989702-10989858) | |
| 107-264, gnl|xenTro1|scaffold_457 (1006218-1006037) | |
| 381-497, gnl|bosTau2|chr29 (18518204-18518320) | |
| 381-497, gnl|canFam2|chr21 (43923284-43923417) | |
| 381-497, gnl|danRer3|chrNA (241888967-241888839) | |
| 381-497, gnl|dasNov1|scaffold_7177 (62156-62022) | |
| 381-497, gnl|echTel1|scaffold_320861 (93944-93810) | |
| 381-497, gnl|fr1|chrUn (153237042-153236924) | |
| 381-497, gnl|galGal2|chr5 (10056846-10056980) | |
| 381-497, gnl|hg17|chr11 (18263452-18263585) | |
| 381-497, gnl|Hg17|chr11 (18263585-18263469) | |
| 381-497, gnl|loxAfr1|scaffold_1205 (115127-114993) | |
| 381-497, gnl|mm7|chr7 (42943277-42943411) | |
| 381-497, gnl|Mm7|chr7 (42943413-42943295) | |
| 381-497, gnl|monDom2|scaffold_10 (53258995-53258861) | |
| 381-497, gnl|oryCun1|scaffold_172798 (49835-49969) | |
| 381-497, gnl|panTro1|chr9 (18495073-18495206) | |
| 381-497, gnl|rheMac2|chr14 (53615291-53615157) | |
| 381-497, gnl|rn3|chr1 (97397582-97397716) | |
| 381-497, gnl|tetNig1|chr13 (10989343-10989447) | |
| 381-497, gnl|xenTro1|scaffold_457 (1007475-1007342) | |
| 604-875, gnl|bosTau2|chr29 (18526933-18527204) | |
| 604-875, gnl|Hg17|chr11 (18260344-18260073) | |
| 604-875, gnl|Mm7|chr7 (42939415-42939144) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cki (0.330469) | |
| mgp (0.230681) | |
| pgl (0.118483) | |
| spc (0.113366) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.330469) | |
| mgp (0.230681) | |
| pgl (0.118483) | |
| spc (0.113366) |