Ss1.1-Pig4-TMW8037P12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAAAGCTGCAAAACACAGTGGAGTGTTCCCGTGTAAATAAAAAGAGGAAAAAAAAGTTT CTCAAGTCGCCGCTGCACGACGTCGGGCCGGCGCCGGGGCGGGGGTCTGCGCTCTCCCGA GCGGCCGCGCGCTGGACTTTATTGTGCCGCAACAAGCCCCCGTTCCCATTGTTTGTGTTT TTTTCAAAATATGGCAAAGGTTCAGGTGAACAATGTAGTGGTGCTGGATAACCCTTCTCC TTTCTACAACCCATTCCAGTTCGAGATCACCTTCGAGTGCATCGAGGACCTGTCTGAAGA CCTGGAATGGAAAATTATCTATGTGGGTTCTGCAGAAAGTGAAGAATACGATCAAGTTTT AGACTCTGTTTTAGTGGGCCCTGTTCCTGCAGGAAGGCATATGTTTGTATTTCAGGCTGA TGCACCTAATCCAGGACTCATTCCAGATGCAGATGCAGTAGGTGTAACAGTTGTGCTAAT TACATGCACCTATCGAGGTCAAGAATTTATTAGAGTTGGTTATTATGTAAATAATGAATA CACCGAGACAGAATTAAGGGAAAATCCGCCTGTAAAACCAGACTTTTCTAAGCTTCAAAG GAATATTTTGGCATCAAATCCCCGAGTCACAAGATTCCACATTAACTGGGAAGATAACAC AGAGAAACTGGAAGATCCAGAGAGCAGTAATCCAAATCTACAATCACTTCTTTCAACAGA TGCATTACCTTCAGCATCAAAGGGATGGTCCACGTCAGAAAACTCACTAAATGTCATGTT AGAATCCCACATGGACTGCATGTGACCACCCGCCATCCCTTTAGTACAAATTAAGCTATT AAAACACACAGAACTATTTCCCTGAAATTCCGTAAGTACATAGTCAAGATACAATGTGAA GAATTTGTTTTAAAACATCCTGTAGAAAGTTTATAAGAAAACCAGTATTTGAGCAAATTG TGGAATATAAATACAACTATTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAAAGCTGCAAAACACAGTGGAGTGTTCCCGTGTAAATAAAAAGAGGAAAAAAAAGTTT CTCAAGTCGCCGCTGCACGACGTCGGGCCGGCGCCGGGGCGGGGGTCTGCGCTCTCCCGA GCGGCCGCGCGCTGGACTTTATTGTGCCGCAACAAGCCCCCGTTCCCATTGTTTGTGTTT TTTTCAAAATATGGCAAAGGTTCAGGTGAACAATGTAGTGGTGCTGGATAACCCTTCTCC TTTCTACAACCCATTCCAGTTCGAGATCACCTTCGAGTGCATCGAGGACCTGTCTGAAGA CCTGGAATGGAAAATTATCTATGTGGGTTCTGCAGAAAGTGAAGAATACGATCAAGTTTT AGACTCTGTTTTAGTGGGCCCTGTTCCTGCAGGAAGGCATATGTTTGTATTTCAGGCTGA TGCACCTAATCCAGGACTCATTCCAGATGCAGATGCAGTAGGTGTAACAGTTGTGCTAAT TACATGCACCTATCGAGGTCAAGAATTTATTAGAGTTGGTTATTATGTAAATAATGAATA CACCGAGACAGAATTAAGGGAAAATCCGCCTGTAAAACCAGACTTTTCTAAGCTTCAAAG GAATATTTTGGCATCAAATCCCCGAGTCACAAGATTCCACATTAACTGGGAAGATAACAC AGAGAAACTGGAAGATCCAGAGAGCAGTAATCCAAATCTACAATCACTTCTTTCAACAGA TGCATTACCTTCAGCATCAAAGGGATGGTCCACGTCAGAAAACTCACTAAATGTCATGTT AGAATCCCACATGGACTGCATGTGACCACCCGCCATCCCTTTAGTACAAATTAAGCTATT AAAACACACAGAACTATTTCCCTGAAATTCCGTAAGTACATAGTCAAGATACAATGTGAA GAATTTGTTTTAAAACATCCTGTAGAAAGTTTATAAGAAAACCAGTATTTGAGCAAATTG TGGAATATAAATACAACTATTTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 710-829, - strand, RNAz p=0.992848 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 710-829, - strand, RNAz p=0.992848 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 298-416, gnl|bosTau2|chr9 (14021338-14021220) | |
| 298-416, gnl|canFam2|chr1 (61880831-61880958) | |
| 298-416, gnl|danRer3|chr10 (20431170-20431289) | |
| 298-416, gnl|dasNov1|scaffold_5910 (58324-58211) | |
| 298-416, gnl|echTel1|scaffold_300217 (15966-15839) | |
| 298-416, gnl|fr1|chrUn (79753046-79752924) | |
| 298-416, gnl|galGal2|chr3 (61250019-61249892) | |
| 298-416, gnl|hg17|chr6 (119263629-119263756) | |
| 298-416, gnl|Hg17|chr6 (119263628-119263746) | |
| 298-416, gnl|loxAfr1|scaffold_1449 (50718-50842) | |
| 298-416, gnl|mm7|chr10 (53419405-53419532) | |
| 298-416, gnl|Mm7|chr10 (53419404-53419522) | |
| 298-416, gnl|monDom2|scaffold_0 (98212129-98212002) | |
| 298-416, gnl|oryCun1|scaffold_25661 (1312-1439) | |
| 298-416, gnl|panTro1|chr5 (121726497-121726624) | |
| 298-416, gnl|rheMac2|chr4 (145091131-145091004) | |
| 298-416, gnl|rn3|chr20 (32280848-32280975) | |
| 298-416, gnl|tetNig1|chr18 (2246015-2246137) | |
| 298-416, gnl|xenTro1|scaffold_88 (1911652-1911778) | |
| 591-984, gnl|bosTau2|chr9 (14015064-14014670) | |
| 591-984, gnl|Hg17|chr6 (119270264-119270658) | |
| 591-984, gnl|Mm7|chr10 (53424721-53425112) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 298-416, gnl|bosTau2|chr9 (14021338-14021220) | |
| 298-416, gnl|canFam2|chr1 (61880831-61880958) | |
| 298-416, gnl|danRer3|chr10 (20431170-20431289) | |
| 298-416, gnl|dasNov1|scaffold_5910 (58324-58211) | |
| 298-416, gnl|echTel1|scaffold_300217 (15966-15839) | |
| 298-416, gnl|fr1|chrUn (79753046-79752924) | |
| 298-416, gnl|galGal2|chr3 (61250019-61249892) | |
| 298-416, gnl|hg17|chr6 (119263629-119263756) | |
| 298-416, gnl|Hg17|chr6 (119263628-119263746) | |
| 298-416, gnl|loxAfr1|scaffold_1449 (50718-50842) | |
| 298-416, gnl|mm7|chr10 (53419405-53419532) | |
| 298-416, gnl|Mm7|chr10 (53419404-53419522) | |
| 298-416, gnl|monDom2|scaffold_0 (98212129-98212002) | |
| 298-416, gnl|oryCun1|scaffold_25661 (1312-1439) | |
| 298-416, gnl|panTro1|chr5 (121726497-121726624) | |
| 298-416, gnl|rheMac2|chr4 (145091131-145091004) | |
| 298-416, gnl|rn3|chr20 (32280848-32280975) | |
| 298-416, gnl|tetNig1|chr18 (2246015-2246137) | |
| 298-416, gnl|xenTro1|scaffold_88 (1911652-1911778) | |
| 591-984, gnl|bosTau2|chr9 (14015064-14014670) | |
| 591-984, gnl|Hg17|chr6 (119270264-119270658) | |
| 591-984, gnl|Mm7|chr10 (53424721-53425112) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| mgp (0.461361) | |
| thg (0.380373) | |
| kid (0.259471) | |
| nco (0.161734) | |
| lin (0.145603) | |
| spl (0.143184) | |
| lyg (0.133103) | |
| bla (0.124347) | |
| tra (0.123092) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| jej (0.0989218) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgp (0.461361) | |
| thg (0.380373) | |
| kid (0.259471) | |
| nco (0.161734) | |
| lin (0.145603) | |
| spl (0.143184) | |
| lyg (0.133103) | |
| bla (0.124347) | |
| tra (0.123092) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| jej (0.0989218) |