Non-Coding RNA Search

Ss1.1-Pig4-TMW8037P17.3

Sequence:


               
               CCGTTGCAGGCCAACTGAGCAACTCTGTGGCCACCAAACTCACAGCCGTGGAGGGCAGCA
TGAAAGAGAGTATCTCCAAGCTGCTCAAGTCCAAGAACCTGACAGATGCCATTGCCCGAG
CAGCTGCAGACACATTACAGGGGCCAATGCAGGCCGCCTACCGTGAAGCCTTCCAGAGCG
TGGTGCTGCCCGCCTTTGAGAAGAGCTGCCAGGCCATGTTCCAGCAGATCAATGATAGCT
TCCGCCTGGGCACACAGGAATACTTGCAGCAGCTGGAGAGCCACATGAAGAGCCGAAAGG
CACGAGAGCAAGAGGCACGGGAGCCTGTGTTGGCCCAGCTGCGGGGCCTGGTCAGCACAC
TGCAGGGGGCCACTGAGCAGATGGCAGCTACTGTGTCCAGCAGCGTTCGGGCTGAGGTGC
AGCACCAGCTTCACGTGGCTGTGGGCAGCCTGCAGGAGTCAATTTTAGCACAGGTACAGC
GCATTGTTAAGGGTGAGGTGAGTGTGGCACTCAAGGAGCAGCAGGCCGCCGTCACCTCTA
GCATCATGCAGGCCATGCGCTCAGCTGCTGGCACACCTGTCCCTGCTGCCCACCTCGACT
GCCAAGCCCAGCAAGCCCATATCCTGCAGCTGCTGCAGCAGGGCCACCTCAATCAGGCCT
TCCAGCAGGCCCTAACAGCTGCTGACCTGAACCTGGTGCTGTATGTGTGTGAAACTGTGG
ACCCAGGCCAGGTTTTTGGGCAGCCACCCTGCCCCCTCTCCCAGCCTGTACTTCTTTCAC
TCATCCAGCAGCTGGCTTCTGACCTTGGCACTCGAACTGACCTCAAGCTCAGCTACCTAG
AAGAGGCTGTGATGCACCTGGACCACAGTGACCCCATCACTCGGGACCACATGGGCTCCG
TCATGGCCCAGGTGCGCCAGAAGCTCTTTCAGTTCTTGCAGGCTGAGCCACACAACTCAC
TTGGCAAAGCGGCCCGGCGTCTCAGCCTCATGCTGCACGGCCTTATGACCCCCAGCCTCC
CTTAGCTAAGCCTGCCTCGCCCAGGGGTTGGATGGCACTGAAGGCCAGAAGACGGGCCTA
GGTCAAAGCAGGTCATGTCCACCCATAACCTGCTCAGGCTCCCACCTCTGGCATGATGAA
TGGGGGTAGCACTGGCTGTGGTCTACAGGTTTTGGTAGCCAGCAGGTTTAGGCTGGGCCC
AGGGTGGGTGTTGTGCCTTCTTGGGTTCTGCCATGCCTCGAGCATGACCACCGAGATTGT
GACACCACTTGAGTTGAATTTTCCATGTTCCTTTTTACCTCCAATTTGGGTCTTTTTGTT
TTGAAAAACATTGAGAAATTCAATTAAATGCTTTTGGAATAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGTTGCAGGCCAACTGAGCAACTCTGTGGCCACCAAACTCACAGCCGTGGAGGGCAGCA
TGAAAGAGAGTATCTCCAAGCTGCTCAAGTCCAAGAACCTGACAGATGCCATTGCCCGAG
CAGCTGCAGACACATTACAGGGGCCAATGCAGGCCGCCTACCGTGAAGCCTTCCAGAGCG
TGGTGCTGCCCGCCTTTGAGAAGAGCTGCCAGGCCATGTTCCAGCAGATCAATGATAGCT
TCCGCCTGGGCACACAGGAATACTTGCAGCAGCTGGAGAGCCACATGAAGAGCCGAAAGG
CACGAGAGCAAGAGGCACGGGAGCCTGTGTTGGCCCAGCTGCGGGGCCTGGTCAGCACAC
TGCAGGGGGCCACTGAGCAGATGGCAGCTACTGTGTCCAGCAGCGTTCGGGCTGAGGTGC
AGCACCAGCTTCACGTGGCTGTGGGCAGCCTGCAGGAGTCAATTTTAGCACAGGTACAGC
GCATTGTTAAGGGTGAGGTGAGTGTGGCACTCAAGGAGCAGCAGGCCGCCGTCACCTCTA
GCATCATGCAGGCCATGCGCTCAGCTGCTGGCACACCTGTCCCTGCTGCCCACCTCGACT
GCCAAGCCCAGCAAGCCCATATCCTGCAGCTGCTGCAGCAGGGCCACCTCAATCAGGCCT
TCCAGCAGGCCCTAACAGCTGCTGACCTGAACCTGGTGCTGTATGTGTGTGAAACTGTGG
ACCCAGGCCAGGTTTTTGGGCAGCCACCCTGCCCCCTCTCCCAGCCTGTACTTCTTTCAC
TCATCCAGCAGCTGGCTTCTGACCTTGGCACTCGAACTGACCTCAAGCTCAGCTACCTAG
AAGAGGCTGTGATGCACCTGGACCACAGTGACCCCATCACTCGGGACCACATGGGCTCCG
TCATGGCCCAGGTGCGCCAGAAGCTCTTTCAGTTCTTGCAGGCTGAGCCACACAACTCAC
TTGGCAAAGCGGCCCGGCGTCTCAGCCTCATGCTGCACGGCCTTATGACCCCCAGCCTCC
CTTAGCTAAGCCTGCCTCGCCCAGGGGTTGGATGGCACTGAAGGCCAGAAGACGGGCCTA
GGTCAAAGCAGGTCATGTCCACCCATAACCTGCTCAGGCTCCCACCTCTGGCATGATGAA
TGGGGGTAGCACTGGCTGTGGTCTACAGGTTTTGGTAGCCAGCAGGTTTAGGCTGGGCCC
AGGGTGGGTGTTGTGCCTTCTTGGGTTCTGCCATGCCTCGAGCATGACCACCGAGATTGT
GACACCACTTGAGTTGAATTTTCCATGTTCCTTTTTACCTCCAATTTGGGTCTTTTTGTT
TTGAAAAACATTGAGAAATTCAATTAAATGCTTTTGGAATAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|18490739|gb|AAH22641.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|18490739|gb|AAH22641.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               830-948, - strand, RNAz p=0.994691
               

               
               989-1254, + strand, RNAz p=0.98034

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               830-948, - strand, RNAz p=0.994691
               

               
               989-1254, + strand, RNAz p=0.98034

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC043616, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC043616, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               81-259, gnl|bosTau2|chr18 (14977804-14977626)
               

               
               81-259, gnl|Hg17|chr16 (66473817-66473996)
               

               
               81-259, gnl|Mm7|chr8 (104489808-104489986)
               


               
               447-669, gnl|bosTau2|chr18 (14977263-14977041)
               

               
               447-669, gnl|Hg17|chr16 (66474360-66474582)
               

               
               447-669, gnl|Mm7|chr8 (104490349-104490571)
               


               
               830-1364, gnl|bosTau2|chr18 (14976275-14975753)
               

               
               830-1364, gnl|Hg17|chr16 (66475357-66475903)
               

               
               830-1364, gnl|Mm7|chr8 (104491522-104492059)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               81-259, gnl|bosTau2|chr18 (14977804-14977626)
               

               
               81-259, gnl|Hg17|chr16 (66473817-66473996)
               

               
               81-259, gnl|Mm7|chr8 (104489808-104489986)
               


               
               447-669, gnl|bosTau2|chr18 (14977263-14977041)
               

               
               447-669, gnl|Hg17|chr16 (66474360-66474582)
               

               
               447-669, gnl|Mm7|chr8 (104490349-104490571)
               


               
               830-1364, gnl|bosTau2|chr18 (14976275-14975753)
               

               
               830-1364, gnl|Hg17|chr16 (66475357-66475903)
               

               
               830-1364, gnl|Mm7|chr8 (104491522-104492059)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

	830-948, - strand, RNAz p=0.994691
	989-1254, + strand, RNAz p=0.98034

	81-259, gnl\|bosTau2\|chr18 (14977804-14977626)
	81-259, gnl\|Hg17\|chr16 (66473817-66473996)
	81-259, gnl\|Mm7\|chr8 (104489808-104489986)

	447-669, gnl\|bosTau2\|chr18 (14977263-14977041)
	447-669, gnl\|Hg17\|chr16 (66474360-66474582)
	447-669, gnl\|Mm7\|chr8 (104490349-104490571)

	830-1364, gnl\|bosTau2\|chr18 (14976275-14975753)
	830-1364, gnl\|Hg17\|chr16 (66475357-66475903)
	830-1364, gnl\|Mm7\|chr8 (104491522-104492059)

	hyp (0.285673)
	fce (0.271592)
	ece (0.229305)
	nlu (0.191681)
	nep (0.183925)
	fbs (0.175346)
	eye (0.170503)
	fhi (0.169578)
	cag (0.151194)
	lnt (0.142308)
	cst (0.140036)
	hlv (0.139256)
	pla (0.133672)
	cly (0.120642)
	eru (0.120048)
	ecc (0.115035)