Non-Coding RNA Search

Ss1.1-Pig4-TMW8037P22.3

Sequence:


               
               TGGTGGCGCCACGTCCCCTGCCGCGGCGGGAGAGGGATCGGCTGGGCCTTGGGGCGGTTG
GCTATGGCCTTTACGCTGTACTCGCTGCTGCAGGCAGCCCTGCTCTGCGTCAATGCCATC
GCCGTGCTGCACGAGGAGCGCTTCCTCAAGAACATTGGCTGGGGAACAGACCAGGGAATT
GGTGGATTCGGAGAAGAGCCAGGAATTAAATCTCAACTAATGAATCTGATTCGATCTGTA
AGAACCGTGATGAGAGTGCCATTGATAATAGTAAACTCAATTGCAATTGTATTACTTTTA
CTATTTGGGTGAAGATCCACAGAGGAAATGGAGACTCATCAGAGGAAGAGCTGCCAGCAG
AAGTTACTACTTCAGTCTTTGTTGGAATATACATATCTTAGCTGGCTCTCCTTGGACTTG
ACAAAGTGTAAACCTGAGAGTAAAACCAGAGTCCCTATTTATCTGATTTTTTAAAATATT
GCACTTATGGTTTCATTACAAAAAGGTCAGATCATCAGAGGCAGTAACTATGCAGGATTG
GAATACATTTGATTGCTAACTTTTAATAAAAGTTCACGCTATGGTAAAGATTGTTTAATG
GGTACAGGACTGTCACTTATGTGTTATTGGAGATTTTTCTCTTTCACTTCTCAGGGATGA
ATTTTTTTTTTCAAAGTTTTGAAGTTCCTTGTGACTTAGTTATGATGTGAGAATGATTAT
CCTTCTAGACAAAATTTAAACATTTTTTTAAAAAGTTATTACTACATATAAAGTGATTTT
ATTTTGAGCTCTTTGGTTAAATATTTTGTCTGTATACTGTCTCATATGAAAAATCAAATT
TTTGCTAACTATTGAGGAGTAATACTCTCTGATTTCAGGGAGAATTCTAATTTTGTAAGT
CAGATAGTCACACGGATGATTGTGTTTTTAAGTTTGTTCATGCATTTGTTATTTTATTAA
TTGGCCTGAATGATGAGACCAGAATAGTATCTACATATGTCCATTGGTAAAGATATCTGT
GTAGAAAAGTCTATGCCCTTTTAAACAATGATGGGTTATTTTTTACAATCAGCATAAAAG
CCTACAGGAGCAGTCCTAAATAATCACCCTTAAGCTGTACTGTATAAGAAGACTTTATCG
TGAAGCATTTACCTCCCCAAATCATCACATTTCTGTTTCTTGAAGTAGCACATTAAGGGA
CGTGATTTGTAATTCTTCATTCTGTCAGTCAATAGAGCATTCGTGGCGGATAAATTGGTT
ATTATTTTGTTTTTATGTCTTTGACCATCCCATATTTTCTTATCCCATAATTCTGCTTTG
TGCAGAAAGATTAAAACTATATAAATGGTTTTTTTCTGGAAATTATCAGTTATAATATTT
TAAAGGGGGGTGGAATGGCATCTTTGTTTATAGGAGAACACTTGTAAATAAAGTTAAATT
TCCAAGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTGGCGCCACGTCCCCTGCCGCGGCGGGAGAGGGATCGGCTGGGCCTTGGGGCGGTTG
GCTATGGCCTTTACGCTGTACTCGCTGCTGCAGGCAGCCCTGCTCTGCGTCAATGCCATC
GCCGTGCTGCACGAGGAGCGCTTCCTCAAGAACATTGGCTGGGGAACAGACCAGGGAATT
GGTGGATTCGGAGAAGAGCCAGGAATTAAATCTCAACTAATGAATCTGATTCGATCTGTA
AGAACCGTGATGAGAGTGCCATTGATAATAGTAAACTCAATTGCAATTGTATTACTTTTA
CTATTTGGGTGAAGATCCACAGAGGAAATGGAGACTCATCAGAGGAAGAGCTGCCAGCAG
AAGTTACTACTTCAGTCTTTGTTGGAATATACATATCTTAGCTGGCTCTCCTTGGACTTG
ACAAAGTGTAAACCTGAGAGTAAAACCAGAGTCCCTATTTATCTGATTTTTTAAAATATT
GCACTTATGGTTTCATTACAAAAAGGTCAGATCATCAGAGGCAGTAACTATGCAGGATTG
GAATACATTTGATTGCTAACTTTTAATAAAAGTTCACGCTATGGTAAAGATTGTTTAATG
GGTACAGGACTGTCACTTATGTGTTATTGGAGATTTTTCTCTTTCACTTCTCAGGGATGA
ATTTTTTTTTTCAAAGTTTTGAAGTTCCTTGTGACTTAGTTATGATGTGAGAATGATTAT
CCTTCTAGACAAAATTTAAACATTTTTTTAAAAAGTTATTACTACATATAAAGTGATTTT
ATTTTGAGCTCTTTGGTTAAATATTTTGTCTGTATACTGTCTCATATGAAAAATCAAATT
TTTGCTAACTATTGAGGAGTAATACTCTCTGATTTCAGGGAGAATTCTAATTTTGTAAGT
CAGATAGTCACACGGATGATTGTGTTTTTAAGTTTGTTCATGCATTTGTTATTTTATTAA
TTGGCCTGAATGATGAGACCAGAATAGTATCTACATATGTCCATTGGTAAAGATATCTGT
GTAGAAAAGTCTATGCCCTTTTAAACAATGATGGGTTATTTTTTACAATCAGCATAAAAG
CCTACAGGAGCAGTCCTAAATAATCACCCTTAAGCTGTACTGTATAAGAAGACTTTATCG
TGAAGCATTTACCTCCCCAAATCATCACATTTCTGTTTCTTGAAGTAGCACATTAAGGGA
CGTGATTTGTAATTCTTCATTCTGTCAGTCAATAGAGCATTCGTGGCGGATAAATTGGTT
ATTATTTTGTTTTTATGTCTTTGACCATCCCATATTTTCTTATCCCATAATTCTGCTTTG
TGCAGAAAGATTAAAACTATATAAATGGTTTTTTTCTGGAAATTATCAGTTATAATATTT
TAAAGGGGGGTGGAATGGCATCTTTGTTTATAGGAGAACACTTGTAAATAAAGTTAAATT
TCCAAGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|12052858|emb|CAB66602.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12052858|emb|CAB66602.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-164, gnl|bosTau2|chr24 (38469385-38469548)
               

               
               1-164, gnl|Hg17|chr18 (42956715-42956546)
               

               
               1-164, gnl|Mm7|chr18 (77211887-77212054)
               


               
               255-1451, gnl|bosTau2|chr24 (38485435-38486630)
               

               
               255-1451, gnl|Hg17|chr18 (42936603-42935410)
               

               
               255-1451, gnl|Mm7|chr18 (77222341-77223445)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-164, gnl|bosTau2|chr24 (38469385-38469548)
               

               
               1-164, gnl|Hg17|chr18 (42956715-42956546)
               

               
               1-164, gnl|Mm7|chr18 (77211887-77212054)
               


               
               255-1451, gnl|bosTau2|chr24 (38485435-38486630)
               

               
               255-1451, gnl|Hg17|chr18 (42936603-42935410)
               

               
               255-1451, gnl|Mm7|chr18 (77222341-77223445)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

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               sin (0.524843)
               

               
               fli (0.405762)
               

               
               tra (0.369276)
               

               
               ctl (0.306138)
               

               
               sme (0.305437)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               fce (0.271592)
               

               
               nmm (0.265604)
               

               
               ret (0.257467)
               

               
               eru (0.240096)
               

               
               ecc (0.23007)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.524843)
               

               
               fli (0.405762)
               

               
               tra (0.369276)
               

               
               ctl (0.306138)
               

               
               sme (0.305437)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               fce (0.271592)
               

               
               nmm (0.265604)
               

               
               ret (0.257467)
               

               
               eru (0.240096)
               

               
               ecc (0.23007)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)

	1-164, gnl\|bosTau2\|chr24 (38469385-38469548)
	1-164, gnl\|Hg17\|chr18 (42956715-42956546)
	1-164, gnl\|Mm7\|chr18 (77211887-77212054)

	255-1451, gnl\|bosTau2\|chr24 (38485435-38486630)
	255-1451, gnl\|Hg17\|chr18 (42936603-42935410)
	255-1451, gnl\|Mm7\|chr18 (77222341-77223445)

	sin (0.524843)
	fli (0.405762)
	tra (0.369276)
	ctl (0.306138)
	sme (0.305437)
	liv (0.292569)
	lin (0.291206)
	spl (0.286369)
	fce (0.271592)
	nmm (0.265604)
	ret (0.257467)
	eru (0.240096)
	ecc (0.23007)
	hea (0.204499)
	col (0.195008)
	mcp (0.170648)
	eye (0.170503)
	nje (0.16592)
	cje (0.165235)
	nco (0.161734)
	fco (0.157208)
	bfe (0.149858)
	clu (0.119646)
	cbl (0.114797)