Ss1.1-Pig4-TMW8038A02.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCTCCGCGCTGGAAGGACAGCGGAATCTCGAGGGCCCGCTGCCTGGGTCGGCCTTGGCG AGGCGCTCGGCCTCGGCGCGCGGCACTTGGAAAGGATCCCGGCCGGGCCAGCTCCGCGAC GCCGCCGCCGCCGCCGCCGAGATGCTCCAGACCTTATATGACTACTTCTGGTGGGAACGG TTATGGCTGCCTGTGAACCTAACCTGGGCTGATCTAGAAGACCGAGATGGGCGTGTCTAC GCCAAAGCCTCAGACCTCTATATCACACTACCCCTGGCCTTGGTCTTCCTCATCATTCGA TACTTCTTTGAGCTTTATGTGGCTACACCACTGGCTGCCCTCCTAAATGTAAAAGAGAAA ACTCGGCTGCGGGCATCTCCCAACCCTACTTTGGAGCACTTCTACCTGACCAGTGGCAAG CAGCCCAAACAGGTGGAGGTAGAGCTTTTGTCACGGCAGAGCGGGCTCTCTGCCCGCCAG GTAGAGCGCTGGTTCCGCCGCCGCCGCAACCAGGACCGGCCCAGTCTCCTCAAGAAGTTC CGAGAAGCCAGCTGGAGATTCACATTTTACCTGATTGCTTTCATCGCCGGCATGGCGGTC ATTGTAGATAAACCCTGGTTCTATGACATGAGGAAAGTTTGGGAGGGATATCCCATCCAG AGCACCATCCCTTCCCAATATTGGTACTACATGATTGAACTGTCTTTCTACTGGTCCCTG CTCTTCAGCATTGCTTCTGATGTCAAAAGAAAGGATTTCAAGGAACAGATCATCCACCAC GTGGCCACCATCATCCTCATTAGCTTCTCCTGGTTCGCCAATTACGTCCGAGCAGGAACT CTTATCATGGCTCTTCATGACTCCTCTGACTACCTGCTAGAGTCAGCCAAGATGTTTAAC TATGCTGGATGGAAAAACACCTGCAACAACATCTTCATCGTCTTCGCCATTGTCTTCATT ATCACCCGACTGGTCATCCTGCCCTTCTGGATCCTGCATTGCACCCTGGTGTACCCACTG GAGCTTTATCCTGCCTTCTTTGGCTATTACTTCTTCAATTTCATGATGGGAGTGTTACAG CTGCTGCATATCTTCTGGGCCTACCTCATTTTGCGCATGGCTCACAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCTCCGCGCTGGAAGGACAGCGGAATCTCGAGGGCCCGCTGCCTGGGTCGGCCTTGGCG AGGCGCTCGGCCTCGGCGCGCGGCACTTGGAAAGGATCCCGGCCGGGCCAGCTCCGCGAC GCCGCCGCCGCCGCCGCCGAGATGCTCCAGACCTTATATGACTACTTCTGGTGGGAACGG TTATGGCTGCCTGTGAACCTAACCTGGGCTGATCTAGAAGACCGAGATGGGCGTGTCTAC GCCAAAGCCTCAGACCTCTATATCACACTACCCCTGGCCTTGGTCTTCCTCATCATTCGA TACTTCTTTGAGCTTTATGTGGCTACACCACTGGCTGCCCTCCTAAATGTAAAAGAGAAA ACTCGGCTGCGGGCATCTCCCAACCCTACTTTGGAGCACTTCTACCTGACCAGTGGCAAG CAGCCCAAACAGGTGGAGGTAGAGCTTTTGTCACGGCAGAGCGGGCTCTCTGCCCGCCAG GTAGAGCGCTGGTTCCGCCGCCGCCGCAACCAGGACCGGCCCAGTCTCCTCAAGAAGTTC CGAGAAGCCAGCTGGAGATTCACATTTTACCTGATTGCTTTCATCGCCGGCATGGCGGTC ATTGTAGATAAACCCTGGTTCTATGACATGAGGAAAGTTTGGGAGGGATATCCCATCCAG AGCACCATCCCTTCCCAATATTGGTACTACATGATTGAACTGTCTTTCTACTGGTCCCTG CTCTTCAGCATTGCTTCTGATGTCAAAAGAAAGGATTTCAAGGAACAGATCATCCACCAC GTGGCCACCATCATCCTCATTAGCTTCTCCTGGTTCGCCAATTACGTCCGAGCAGGAACT CTTATCATGGCTCTTCATGACTCCTCTGACTACCTGCTAGAGTCAGCCAAGATGTTTAAC TATGCTGGATGGAAAAACACCTGCAACAACATCTTCATCGTCTTCGCCATTGTCTTCATT ATCACCCGACTGGTCATCCTGCCCTTCTGGATCCTGCATTGCACCCTGGTGTACCCACTG GAGCTTTATCCTGCCTTCTTTGGCTATTACTTCTTCAATTTCATGATGGGAGTGTTACAG CTGCTGCATATCTTCTGGGCCTACCTCATTTTGCGCATGGCTCACAAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1011-1128, - strand, RNAz p=0.653734 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1011-1128, - strand, RNAz p=0.653734 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 141-314, gnl|bosTau2|chr3 (16582439-16582612) | |
| 141-314, gnl|canFam2|chr17 (63152313-63152498) | |
| 141-314, gnl|danRer3|chrUn (48114100-48113915) | |
| 141-314, gnl|dasNov1|scaffold_10698 (12334-12507) | |
| 141-314, gnl|echTel1|scaffold_292971 (9212-9034) | |
| 141-314, gnl|fr1|chrUn (290381302-290381504) | |
| 141-314, gnl|galGal2|chr28 (491582-491398) | |
| 141-314, gnl|hg17|chr1 (147754431-147754616) | |
| 141-314, gnl|Hg17|chr1 (147754640-147754467) | |
| 141-314, gnl|loxAfr1|scaffold_174452 (883-703) | |
| 141-314, gnl|mm7|chr3 (95194214-95194037) | |
| 141-314, gnl|Mm7|chr3 (95194011-95194184) | |
| 141-314, gnl|monDom2|scaffold_44 (4140094-4140275) | |
| 141-314, gnl|oryCun1|scaffold_169723 (4324-4479) | |
| 141-314, gnl|panTro1|chr1 (129488556-129488741) | |
| 141-314, gnl|rheMac2|chr1 (129377482-129377667) | |
| 141-314, gnl|rn3|chr2 (190191711-190191534) | |
| 141-314, gnl|tetNig1|chr8 (8694365-8694526) | |
| 141-314, gnl|xenTro1|scaffold_122 (2081671-2081515) | |
| 421-551, gnl|bosTau2|chr3 (16583322-16583452) | |
| 421-551, gnl|canFam2|chr17 (63151482-63151633) | |
| 421-551, gnl|danRer3|chrUn (48116391-48116274) | |
| 421-551, gnl|dasNov1|scaffold_10698 (11449-11602) | |
| 421-551, gnl|fr1|chrUn (290380753-290380902) | |
| 421-551, gnl|galGal2|chr28 (493939-493768) | |
| 421-551, gnl|hg17|chr1 (147753610-147753760) | |
| 421-551, gnl|Hg17|chr1 (147753762-147753632) | |
| 421-551, gnl|mm7|chr3 (95195036-95194883) | |
| 421-551, gnl|Mm7|chr3 (95194879-95195009) | |
| 421-551, gnl|monDom2|scaffold_44 (4138890-4139050) | |
| 421-551, gnl|oryCun1|scaffold_204633 (56689-56539) | |
| 421-551, gnl|panTro1|chr1 (129487735-129487885) | |
| 421-551, gnl|rheMac2|chr1 (129376658-129376811) | |
| 421-551, gnl|rn3|chr2 (190192529-190192376) | |
| 421-551, gnl|tetNig1|chr8 (8693442-8693587) | |
| 421-551, gnl|xenTro1|scaffold_122 (2083264-2083130) | |
| 752-886, gnl|bosTau2|chr3 (16584388-16584523) | |
| 752-886, gnl|Hg17|chr1 (147752753-147752618) | |
| 752-886, gnl|Mm7|chr3 (95195778-95195913) | |
| 989-1128, gnl|bosTau2|chr3 (16584963-16585102) | |
| 989-1128, gnl|Hg17|chr1 (147752179-147752040) | |
| 989-1128, gnl|Mm7|chr3 (95196268-95196407) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 141-314, gnl|bosTau2|chr3 (16582439-16582612) | |
| 141-314, gnl|canFam2|chr17 (63152313-63152498) | |
| 141-314, gnl|danRer3|chrUn (48114100-48113915) | |
| 141-314, gnl|dasNov1|scaffold_10698 (12334-12507) | |
| 141-314, gnl|echTel1|scaffold_292971 (9212-9034) | |
| 141-314, gnl|fr1|chrUn (290381302-290381504) | |
| 141-314, gnl|galGal2|chr28 (491582-491398) | |
| 141-314, gnl|hg17|chr1 (147754431-147754616) | |
| 141-314, gnl|Hg17|chr1 (147754640-147754467) | |
| 141-314, gnl|loxAfr1|scaffold_174452 (883-703) | |
| 141-314, gnl|mm7|chr3 (95194214-95194037) | |
| 141-314, gnl|Mm7|chr3 (95194011-95194184) | |
| 141-314, gnl|monDom2|scaffold_44 (4140094-4140275) | |
| 141-314, gnl|oryCun1|scaffold_169723 (4324-4479) | |
| 141-314, gnl|panTro1|chr1 (129488556-129488741) | |
| 141-314, gnl|rheMac2|chr1 (129377482-129377667) | |
| 141-314, gnl|rn3|chr2 (190191711-190191534) | |
| 141-314, gnl|tetNig1|chr8 (8694365-8694526) | |
| 141-314, gnl|xenTro1|scaffold_122 (2081671-2081515) | |
| 421-551, gnl|bosTau2|chr3 (16583322-16583452) | |
| 421-551, gnl|canFam2|chr17 (63151482-63151633) | |
| 421-551, gnl|danRer3|chrUn (48116391-48116274) | |
| 421-551, gnl|dasNov1|scaffold_10698 (11449-11602) | |
| 421-551, gnl|fr1|chrUn (290380753-290380902) | |
| 421-551, gnl|galGal2|chr28 (493939-493768) | |
| 421-551, gnl|hg17|chr1 (147753610-147753760) | |
| 421-551, gnl|Hg17|chr1 (147753762-147753632) | |
| 421-551, gnl|mm7|chr3 (95195036-95194883) | |
| 421-551, gnl|Mm7|chr3 (95194879-95195009) | |
| 421-551, gnl|monDom2|scaffold_44 (4138890-4139050) | |
| 421-551, gnl|oryCun1|scaffold_204633 (56689-56539) | |
| 421-551, gnl|panTro1|chr1 (129487735-129487885) | |
| 421-551, gnl|rheMac2|chr1 (129376658-129376811) | |
| 421-551, gnl|rn3|chr2 (190192529-190192376) | |
| 421-551, gnl|tetNig1|chr8 (8693442-8693587) | |
| 421-551, gnl|xenTro1|scaffold_122 (2083264-2083130) | |
| 752-886, gnl|bosTau2|chr3 (16584388-16584523) | |
| 752-886, gnl|Hg17|chr1 (147752753-147752618) | |
| 752-886, gnl|Mm7|chr3 (95195778-95195913) | |
| 989-1128, gnl|bosTau2|chr3 (16584963-16585102) | |
| 989-1128, gnl|Hg17|chr1 (147752179-147752040) | |
| 989-1128, gnl|Mm7|chr3 (95196268-95196407) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| nje (0.33184) | |
| cov (0.264306) | |
| eep (0.245128) | |
| fli (0.202881) | |
| cag (0.151194) | |
| ecc (0.115035) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.33184) | |
| cov (0.264306) | |
| eep (0.245128) | |
| fli (0.202881) | |
| cag (0.151194) | |
| ecc (0.115035) |