Ss1.1-Pig4-TMW8038A06.5
|
GCCAGGTTCCCAGAGGGCAGCGCGTCCAGGCAGCTCGGCGCTGTCATGGCGGGGTTGCTG
AAGAAGACCACTGGCCTTGTGGGATTGGCTGTATGTGAAACTCCACATGAGAGGCTAAAA
ATACTGTATACAAAGATTCTTGATGTTCTTGGACAAATACCTAAAAATGCAGCATATAGA
AAGTATACAGAACAGATTACAAATGAGAAGCTAGGTATGGTTAAAGCGGAACCAGATGTT
AAAAAATTAGAAGAGCAACTTCAGGGTGGCCAAATAGAAGAGGTGATTCTTCAGGCAGAA
AATGAACTAAGTCTGGCAAGAAAAATGTTGCGGTGGAAGCCATGGGAGCCTTTAGTGGAA
GAGCCTCCTGCCAACCAATGGAAATGGCCAATATAAATATCATTAGATGACTTGTGTGTT
GATGAGAAACTGATGTAATTAAATATTGTGTAATGTTAAAAAAAAAAACATGTTATTGAT
ATATTATAATCAAGAAAATTGATGGAGAACATATTTTGGGGACTTGCTAAAATTGATGAA
TATGGTAATAGGGAGTTTGAGTCAGTTTTGATTTGTAGAGTATTCATTCAAATTGTTTCA
AAGATGATTCTTTATAATCAGAAGTTGTGGGAAAATCTGAAAGTTAATTGGAAAAATCCC
TATAGATTTTTACTGCAGAAGCTGCATTTGAAAGGTGAAGTATTTTTTAGTACTACCTTC
AACACATCATTTAATTTTTTTATTCTGAAAAAGCATAAATGTACTTTTACTATTGTTTAA
ACAAATTTATAGGTCACTGTTTGAAGTGAAGTAGTAATAGTAAAAACTTCAAATCAGAAT
TCATTGTACAGTTGAGAAAATTGATTTTCGTATTCAAAAGAAAGATTTTTTTTATTTACA
GGTAGTTGGAAAAACTTTTCCACTTGTCTAATTTAAGGAAGTTAGCCTTCTGGCCCTTGG
CCTTTAGTTTTCTTACTCAACTAAAGTACATCAGGATATGGAATTTCTGTAAAAGAGATA
TTAAGAGTTCCTAAAGTTTGTCTGGCATACAGATAGGCTTATATTCAAAATATCTTAGTT
GTATGGTTATAACGTCAAAGTGGAGTCACTAAGTAGTTTTCATTAGTTTCCAATATGAGT
GCAGTCAGATATCAGATAGAAGATAAATGCTATTCAAAGAAAGAAGCAGTTTGACAAGTT
TAAGGCTAAACAAAATAAAATTACTTTGCATATGTATTTAACTTTTCTTCCTATCTCCCA
TCATTTCTAAATACTTAGTCAAATTTGGTATTTCTTACCTTCAAAGTACTTTTGTTTTTT
GTGTATGTATGTGCATGTATATTTTGCTATCTCTTGTGGTAAAACAGAACCTTTTAGAAT
ACTTAGAATAAGAAAAAATAAGTATTTTTCCCCAGTATTTCTTCCTTTACAGAGCTATAA
ATTGAATATTAAGTGAATATTAAACGAAATACTTTAGCAGTCAAACTGAAAGAGAAAGCT
TCTGTAGGGGGAGTGAGAAAAGCAGTGGAGGGAGAGTCAAATCCAGAAGTTCTCATTCTC
TTGGTTCTAGTGCCATCGTGACTCAGTGTCTAAGTGGAGGCAAGTTGTCAATCTCTCAGA
ATGGCCTATTTATTTCCTTCTCTGTAAAAGAAGTAGAATATGATTTATAACTCCCCTTTC
AGTTCTAACCATTTGCTTTAATATATACTACATTTTATTTATTTATTTATAAAAATTGAA
GTTCAGTTGATTTACAATGTTGGCTTGGTTTAAAAAAAAGAAAACCATTATGGTTTATCA
CCCTATACTATATAGTAGGACCTTGTTTATCCATTCTAAATATAATAGTTTGCATCTGCT |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCCAGGTTCCCAGAGGGCAGCGCGTCCAGGCAGCTCGGCGCTGTCATGGCGGGGTTGCTG
AAGAAGACCACTGGCCTTGTGGGATTGGCTGTATGTGAAACTCCACATGAGAGGCTAAAA
ATACTGTATACAAAGATTCTTGATGTTCTTGGACAAATACCTAAAAATGCAGCATATAGA
AAGTATACAGAACAGATTACAAATGAGAAGCTAGGTATGGTTAAAGCGGAACCAGATGTT
AAAAAATTAGAAGAGCAACTTCAGGGTGGCCAAATAGAAGAGGTGATTCTTCAGGCAGAA
AATGAACTAAGTCTGGCAAGAAAAATGTTGCGGTGGAAGCCATGGGAGCCTTTAGTGGAA
GAGCCTCCTGCCAACCAATGGAAATGGCCAATATAAATATCATTAGATGACTTGTGTGTT
GATGAGAAACTGATGTAATTAAATATTGTGTAATGTTAAAAAAAAAAACATGTTATTGAT
ATATTATAATCAAGAAAATTGATGGAGAACATATTTTGGGGACTTGCTAAAATTGATGAA
TATGGTAATAGGGAGTTTGAGTCAGTTTTGATTTGTAGAGTATTCATTCAAATTGTTTCA
AAGATGATTCTTTATAATCAGAAGTTGTGGGAAAATCTGAAAGTTAATTGGAAAAATCCC
TATAGATTTTTACTGCAGAAGCTGCATTTGAAAGGTGAAGTATTTTTTAGTACTACCTTC
AACACATCATTTAATTTTTTTATTCTGAAAAAGCATAAATGTACTTTTACTATTGTTTAA
ACAAATTTATAGGTCACTGTTTGAAGTGAAGTAGTAATAGTAAAAACTTCAAATCAGAAT
TCATTGTACAGTTGAGAAAATTGATTTTCGTATTCAAAAGAAAGATTTTTTTTATTTACA
GGTAGTTGGAAAAACTTTTCCACTTGTCTAATTTAAGGAAGTTAGCCTTCTGGCCCTTGG
CCTTTAGTTTTCTTACTCAACTAAAGTACATCAGGATATGGAATTTCTGTAAAAGAGATA
TTAAGAGTTCCTAAAGTTTGTCTGGCATACAGATAGGCTTATATTCAAAATATCTTAGTT
GTATGGTTATAACGTCAAAGTGGAGTCACTAAGTAGTTTTCATTAGTTTCCAATATGAGT
GCAGTCAGATATCAGATAGAAGATAAATGCTATTCAAAGAAAGAAGCAGTTTGACAAGTT
TAAGGCTAAACAAAATAAAATTACTTTGCATATGTATTTAACTTTTCTTCCTATCTCCCA
TCATTTCTAAATACTTAGTCAAATTTGGTATTTCTTACCTTCAAAGTACTTTTGTTTTTT
GTGTATGTATGTGCATGTATATTTTGCTATCTCTTGTGGTAAAACAGAACCTTTTAGAAT
ACTTAGAATAAGAAAAAATAAGTATTTTTCCCCAGTATTTCTTCCTTTACAGAGCTATAA
ATTGAATATTAAGTGAATATTAAACGAAATACTTTAGCAGTCAAACTGAAAGAGAAAGCT
TCTGTAGGGGGAGTGAGAAAAGCAGTGGAGGGAGAGTCAAATCCAGAAGTTCTCATTCTC
TTGGTTCTAGTGCCATCGTGACTCAGTGTCTAAGTGGAGGCAAGTTGTCAATCTCTCAGA
ATGGCCTATTTATTTCCTTCTCTGTAAAAGAAGTAGAATATGATTTATAACTCCCCTTTC
AGTTCTAACCATTTGCTTTAATATATACTACATTTTATTTATTTATTTATAAAAATTGAA
GTTCAGTTGATTTACAATGTTGGCTTGGTTTAAAAAAAAGAAAACCATTATGGTTTATCA
CCCTATACTATATAGTAGGACCTTGTTTATCCATTCTAAATATAATAGTTTGCATCTGCT |
|
173-513, gnl|bosTau2|chr14 (265794-265461) |
|
173-513, gnl|Hg17|chr6 (86980892-86980554) |
|
173-513, gnl|Mm7|chr12 (23119287-23119569) |
| |
|
1043-1320, gnl|bosTau2|chr24 (7163957-7163675) |
|
1043-1320, gnl|dasNov1|scaffold_10887 (6947-7098) |
|
1043-1320, gnl|hg17|chr10 (79586461-79586650) |
|
1043-1320, gnl|Hg17|chr7 (122775231-122774967) |
|
1043-1320, gnl|oryCun1|scaffold_135502 (3755-3943) |
|
1043-1320, gnl|panTro1|chr8 (80866313-80866504) |
|
1043-1320, gnl|rheMac2|chr9 (58901490-58901301) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
173-513, gnl|bosTau2|chr14 (265794-265461) |
|
173-513, gnl|Hg17|chr6 (86980892-86980554) |
|
173-513, gnl|Mm7|chr12 (23119287-23119569) |
| |
|
1043-1320, gnl|bosTau2|chr24 (7163957-7163675) |
|
1043-1320, gnl|dasNov1|scaffold_10887 (6947-7098) |
|
1043-1320, gnl|hg17|chr10 (79586461-79586650) |
|
1043-1320, gnl|Hg17|chr7 (122775231-122774967) |
|
1043-1320, gnl|oryCun1|scaffold_135502 (3755-3943) |
|
1043-1320, gnl|panTro1|chr8 (80866313-80866504) |
|
1043-1320, gnl|rheMac2|chr9 (58901490-58901301) |
|
bfe (1.94815) |
|
sto (1.61841) |
|
cte (1.17096) |
|
nms (1.06929) |
|
vin (0.997672) |
|
cbe (0.956938) |
|
cmu (0.931966) |
|
tbr (0.925069) |
|
mas (0.630915) |
|
ste (0.540833) |
|
fco (0.471624) |
|
csk (0.422238) |
|
fcc (0.39557) |
|
aor (0.390549) |
|
sag (0.36543) |
|
rec (0.346141) |
|
spc (0.340097) |
|
sme (0.305437) |
|
isp (0.300752) |
|
fat (0.294855) |
|
nca (0.273748) |
|
lyg (0.266205) |
|
ese (0.253004) |
|
ece (0.229305) |
|
jca (0.22792) |
|
hea (0.204499) |
|
ton (0.1755) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
mga (0.160205) |
|
ski (0.146735) |
|
liv (0.146284) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
che (0.136314) |
|
pla (0.133672) |
|
kid (0.129735) |
|
ret (0.128733) |
|
sug (0.127291) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
med (0.116252) |
|
jej (0.0989218) |
|
ldo (0.0970026) |
|
bfe (1.94815) |
|
sto (1.61841) |
|
cte (1.17096) |
|
nms (1.06929) |
|
vin (0.997672) |
|
cbe (0.956938) |
|
cmu (0.931966) |
|
tbr (0.925069) |
|
mas (0.630915) |
|
ste (0.540833) |
|
fco (0.471624) |
|
csk (0.422238) |
|
fcc (0.39557) |
|
aor (0.390549) |
|
sag (0.36543) |
|
rec (0.346141) |
|
spc (0.340097) |
|
sme (0.305437) |
|
isp (0.300752) |
|
fat (0.294855) |
|
nca (0.273748) |
|
lyg (0.266205) |
|
ese (0.253004) |
|
ece (0.229305) |
|
jca (0.22792) |
|
hea (0.204499) |
|
ton (0.1755) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
mga (0.160205) |
|
ski (0.146735) |
|
liv (0.146284) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
che (0.136314) |
|
pla (0.133672) |
|
kid (0.129735) |
|
ret (0.128733) |
|
sug (0.127291) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
med (0.116252) |
|
jej (0.0989218) |
|
ldo (0.0970026) |
