Non-Coding RNA Search

Ss1.1-Pig4-TMW8038A10.5

Sequence:


               
               CCATCCTGGCACAAGCACTGGGCTCACCCACCAGCCCTGAAGAGGTGAGCTCAACCTCTG
GCCTCCATGGACTCGGGGGGCCAGGCAAAGACTGACAGAGCTTTGGGGGCTGTGATGTGA
TTGCAGCCCCTGAGGTGGCCTGCCCGCCCCAGGTCTAGGAATGGACTTCTTCAGAATTTG
TATACGCACCTAGAATGAGGCTGATGAGAAGAACATCGTGGCCATCAGACCTACTTGGGA
GAGAACTCAGAGCTCCCAGCCTGCTGTGGAGGCAGCTGAAAAGCAGTGGCCTCAGGACTG
AGAAGCAGTGGCCCGGACGTTGCTGTACTGTACCATGTAGTGTAGAAGGGAAGAGAATTG
GTGCTGCAGAAGTGTGTCCGCTACGAAGCTGATGAGAAACCTCGTGTTAGTCTGACATGC
ACTCACTTACTCATCCATTTCTATAGGATGCACAATGCACGTGGGCCCTGATATAGAGGC
CCAATCCTTGCAGCTGGGAAGTGGGAGGGGTTGCCGCTTTGCTTCGTGTTTGTTTTCTTA
TAACTTAGCAAGGAGAGAGCCAGGCCTTGGTCTCGGCTCCCGCTGCTGCCCTTGGCAGTT
CTGTTTCTGTGCTGATTCGGACCATCTTTGTCTTGCCTTTTCACAGTGGTGGTCCCTGTG
CCGACCCTCATCTGGGCCTGGGCCCTCTGCCAAGTGGGATGGGAGGAGTAAGGCAGTGGG
ATTGAGTTGATGGTTGTTTCTATGCATTCAGGCTGCCCTCAGGGGTGCCTCCCTCCTTAC
TCTTCCCGTCCTGCACGCCCATCTCTTTTCCTGTCTTTGAGATTGACCTGACTACTCTGG
CAAGAAGAGGAGGTGTCCTCTTTAAAGAGGCGTCTCTTTACTGACCACCTGAAGTACAGA
CTTATTGCTGGACAGTCTGCATGGGCATCACCCCCACCCTCACCTGCATGTACCCAAAAG
AGATGTCCAGAGCCAAGGCTCCTACATTCATTGTCCCTCTCTGTGCTCAAGGAGTTCCAT
TCCAGGAGGGAAAAATTTATGCTTTAAGCAGATAGCAGAGAAGATAATGGAGGAGCAATT
GGTCATGGCCTTGGTTCCCCCCAAAACAACTGTGCAGACCTGTCTGCACTATTGGGGGAA
AAGATGGGTAGACCCTAGCTCCCCGGACTGCCTTAAGGAAGCACAGGAGCTGGGGGAAGA
GGCAAAGCTACAGGTTTACCTTGGAGCCAGCTGAGAAGAGAGCAGACTTATAGGTGCTGG
TGCTTGGATTTAGCCAGGCTCCTCGGAGCACCTCCTGCATGCCCCAGCCCCTGGGCCCCT
TACTGCCCTGCAGCCTGCAGTACCAGCACGCAGACACCTTCACCACAGGGTTTGGTTTTG
CTGGCTTGAAGACAAATGGTCTTAGAGTTCATTAAGACCCATAGCTTCATATGGCTGCTC
CAGCCCCACTTCTTAAGCATTCTTACTCCTCTTCTGGGGCTAATGTCAGCATCTATAGAC
AATAGACTATTAAAAAAAAAAAAAACCTTTTAAACAGGAAATGGAAGGCATTTGATGCAG
AATTTTTGCATGACGACATAGAAATAATTTAAAAATAGTGTTTGTTCTGAATGTTGGTAG
ACCCTTCATAGCTTTGTTACAATGAAACCTTGAACTGAAGATATTTAATAAAATAACCTT
TAAACAGTCAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATCCTGGCACAAGCACTGGGCTCACCCACCAGCCCTGAAGAGGTGAGCTCAACCTCTG
GCCTCCATGGACTCGGGGGGCCAGGCAAAGACTGACAGAGCTTTGGGGGCTGTGATGTGA
TTGCAGCCCCTGAGGTGGCCTGCCCGCCCCAGGTCTAGGAATGGACTTCTTCAGAATTTG
TATACGCACCTAGAATGAGGCTGATGAGAAGAACATCGTGGCCATCAGACCTACTTGGGA
GAGAACTCAGAGCTCCCAGCCTGCTGTGGAGGCAGCTGAAAAGCAGTGGCCTCAGGACTG
AGAAGCAGTGGCCCGGACGTTGCTGTACTGTACCATGTAGTGTAGAAGGGAAGAGAATTG
GTGCTGCAGAAGTGTGTCCGCTACGAAGCTGATGAGAAACCTCGTGTTAGTCTGACATGC
ACTCACTTACTCATCCATTTCTATAGGATGCACAATGCACGTGGGCCCTGATATAGAGGC
CCAATCCTTGCAGCTGGGAAGTGGGAGGGGTTGCCGCTTTGCTTCGTGTTTGTTTTCTTA
TAACTTAGCAAGGAGAGAGCCAGGCCTTGGTCTCGGCTCCCGCTGCTGCCCTTGGCAGTT
CTGTTTCTGTGCTGATTCGGACCATCTTTGTCTTGCCTTTTCACAGTGGTGGTCCCTGTG
CCGACCCTCATCTGGGCCTGGGCCCTCTGCCAAGTGGGATGGGAGGAGTAAGGCAGTGGG
ATTGAGTTGATGGTTGTTTCTATGCATTCAGGCTGCCCTCAGGGGTGCCTCCCTCCTTAC
TCTTCCCGTCCTGCACGCCCATCTCTTTTCCTGTCTTTGAGATTGACCTGACTACTCTGG
CAAGAAGAGGAGGTGTCCTCTTTAAAGAGGCGTCTCTTTACTGACCACCTGAAGTACAGA
CTTATTGCTGGACAGTCTGCATGGGCATCACCCCCACCCTCACCTGCATGTACCCAAAAG
AGATGTCCAGAGCCAAGGCTCCTACATTCATTGTCCCTCTCTGTGCTCAAGGAGTTCCAT
TCCAGGAGGGAAAAATTTATGCTTTAAGCAGATAGCAGAGAAGATAATGGAGGAGCAATT
GGTCATGGCCTTGGTTCCCCCCAAAACAACTGTGCAGACCTGTCTGCACTATTGGGGGAA
AAGATGGGTAGACCCTAGCTCCCCGGACTGCCTTAAGGAAGCACAGGAGCTGGGGGAAGA
GGCAAAGCTACAGGTTTACCTTGGAGCCAGCTGAGAAGAGAGCAGACTTATAGGTGCTGG
TGCTTGGATTTAGCCAGGCTCCTCGGAGCACCTCCTGCATGCCCCAGCCCCTGGGCCCCT
TACTGCCCTGCAGCCTGCAGTACCAGCACGCAGACACCTTCACCACAGGGTTTGGTTTTG
CTGGCTTGAAGACAAATGGTCTTAGAGTTCATTAAGACCCATAGCTTCATATGGCTGCTC
CAGCCCCACTTCTTAAGCATTCTTACTCCTCTTCTGGGGCTAATGTCAGCATCTATAGAC
AATAGACTATTAAAAAAAAAAAAAACCTTTTAAACAGGAAATGGAAGGCATTTGATGCAG
AATTTTTGCATGACGACATAGAAATAATTTAAAAATAGTGTTTGTTCTGAATGTTGGTAG
ACCCTTCATAGCTTTGTTACAATGAAACCTTGAACTGAAGATATTTAATAAAATAACCTT
TAAACAGTCAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               539-655, - strand, RNAz p=0.666081
               

               
               696-886, - strand, RNAz p=0.987402
               

               
               966-1531, - strand, RNAz p=0.999079

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               539-655, - strand, RNAz p=0.666081
               

               
               696-886, - strand, RNAz p=0.987402
               

               
               966-1531, - strand, RNAz p=0.999079

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               901-1123, - strand, RNAmicro p=0.996337

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               901-1123, - strand, RNAmicro p=0.996337

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1689, gnl|bosTau2|chr28 (22951471-22949760)
               

               
               1-1689, gnl|Hg17|chr10 (75243949-75242265)
               

               
               1-1689, gnl|Mm7|chr14 (18393092-18391432)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1689, gnl|bosTau2|chr28 (22951471-22949760)
               

               
               1-1689, gnl|Hg17|chr10 (75243949-75242265)
               

               
               1-1689, gnl|Mm7|chr14 (18393092-18391432)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               vin (0.332557)
               

               
               cly (0.241284)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               tbr (0.154178)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               cly (0.241284)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               tbr (0.154178)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

	539-655, - strand, RNAz p=0.666081
	696-886, - strand, RNAz p=0.987402
	966-1531, - strand, RNAz p=0.999079

	1-1689, gnl\|bosTau2\|chr28 (22951471-22949760)
	1-1689, gnl\|Hg17\|chr10 (75243949-75242265)
	1-1689, gnl\|Mm7\|chr14 (18393092-18391432)

	vin (0.332557)
	cly (0.241284)
	fcc (0.197785)
	nlu (0.191681)
	gul (0.177588)
	ill (0.175593)
	eye (0.170503)
	nje (0.16592)
	tbr (0.154178)
	cst (0.140036)
	ssp (0.13552)
	pla (0.133672)
	ute (0.132784)
	ova (0.129132)
	ret (0.128733)
	bla (0.124347)
	ebs (0.118301)
	med (0.116252)
	eje (0.0988338)