Ss1.1-Pig4-TMW8038A19.5
|
TTTTTTTTTTTTTTTTTTTTGATGGTCCAGTTCTTTATTTAGAAACCTGATTGTTCAAGA
ACATGGTGAGTGGGGCTGTAGCCCATCCTTCTCACAGGATTGTGTCAGAGGTGGTGATGG
GCAACTTTCTTTCCATTTTCTTAGCAACAGAGGGAAAGTGCCTCAACTCAGAAGCACAGA
TTGTAGGGAACAGTGTGGAAAGGGCAAGGGCAAGACATCCCTAGCCAATCTGGGGAAAGA
GGGGAAGGTGACAATAGTGGGGCAGGGGTGGGGGCCGGCCTCTCAGGGCCTGCTGATCTG
CCCCCACGCTTCTTGCTCCCCCTGCTCTACTCACTCAAAAGATCTCGCCACGCTCTCGGT
AAGGGGGGAAATGAACCCCTAAGTTGGAGAACGGCAACAGGGGAAGCTGGGGAGAAAAGG
AAGTGAGTGGGGGGGAGAAGCCTGGGAGAGCAGATCTCACAGGCCTGGGAGGTCTTGAGG
ACGGCTCTCAGCAGCAGCAGCAGCAGCAGCAGCACTCCTCCCAGGGTCCCTCACATCCCC
AGGTGGGCCTCGAAGGCACAGCTTCACAGCTTAGCTCTCCTCTGCTATTTTGCCTTCAGG
GCCCTGGGGAGTAGGGGTGAGGGGAGGAGGCAGGGCCAGTCTAGGAAGACTCTGGACTCC
TTGGCGAGCCGACAGTGGCGGTCTCAGAAGTCAAATTCGTCCAGGTCCCCCGTGCCCTCC
CCGTCACGGGAGCCCCACACCCGGCGGTAATTGCTCTCCAGCTTCTTCTGCCGCTGCCGC
TCTTTCTGCACCTCTTCAGCTCCCTGCACCAAGATATTGAAGAAAATCTCCTTGAGGTGT
TTTGTGTCCTCATCAGTCAGCCAACGTGCATCCTCTTCAGTCCCTTCCGTCCCTGGTTGG
ACAATTTTGATCTCAATTTTCCCTTCAGCTGTGAGTCCCTCCCTCTCCAGCAGCTCTTTC
ACCAGCCCCTCGATTTGTTTCAGCTGTGGGTTTTCTGGTTTCATCTGGAGGACAGTCAGA
TCCCGATTGGGGCCTCCGTGACGGAGCTTGATGATCCGGACCTGGACTCTGTGTTCAGGA
TCCTCCTCTGATGGCTGGGGAGACGGGGGAGGCTTTTGGGGGATAACCCTCCTTTTCCGG
TGCTTCTTCAACAGCTCTGGATTCTGTTTTTCCTCTAGCCTTTTGATGAGTTTGTCGAGA
GTGGATGTCAAGGCCAGTATAGCCCGATCACGCTCCGACTCCTTCTTCAGCCCATCTGGG
TCCAGCTCTTTCTCTGTCTCCTGGATGATGTTCTCCAGCTCCCGCTCCATGCCAGCCTTC
ACCTCGGCACGCAGCCGGTCTCGGTCTGATGGGAGCAGTATCCCTTCCCCCGATCACGCT
CCGACTCCTTCTTCAGCCCATCTGGGTCCAGCTCTTTCTCTGTCTCCTGGATGATGTTCT
CCAGCTCCCGCTCCATGCCAGCCTTCACCTCGGCACGCAGCCGGTCTCGGTCTGATGGGA
GCAGTATCCCTTCCAGTTCCTTCTCAAATTCCCCCAGCAACTGCCGTTCATCCTCATCGT
CTTCATCCTCATCGTCGTCCTCCTCTTCCACCTCGTTCTGATGTTCTGGGTCACTCTTTT
CCTTCACCTCTGGTTCCCTGGGAGGGGCTTCTGTGGCACCGTCTGCAGGCTGCTCTTGGC
CTGCATCTGGCTTCCCCTTTCTTGTTCCACCCTTCAGCTCCTCTATCAACTGAATCAAGT
CTGCGGGACTCCGAATGACTTTGACCTGCACATTGTTCTGAAAATCATCGGGAGAGCCTG
GCACTGGATCTGCAGCCTCAAGATTTGGCTCCTGCTCCTCAGCCTGCGCCTCCTCCCCTT
CTGGGGCCTGTTCTTCTGGCTCATGAAGCATCTTCCAGAAATCTGATTCCTTACTGTCCT
CCTTGGCTGGGCTTGCACCTGTTT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTTTTTTTTTTTTTTTTTTTGATGGTCCAGTTCTTTATTTAGAAACCTGATTGTTCAAGA
ACATGGTGAGTGGGGCTGTAGCCCATCCTTCTCACAGGATTGTGTCAGAGGTGGTGATGG
GCAACTTTCTTTCCATTTTCTTAGCAACAGAGGGAAAGTGCCTCAACTCAGAAGCACAGA
TTGTAGGGAACAGTGTGGAAAGGGCAAGGGCAAGACATCCCTAGCCAATCTGGGGAAAGA
GGGGAAGGTGACAATAGTGGGGCAGGGGTGGGGGCCGGCCTCTCAGGGCCTGCTGATCTG
CCCCCACGCTTCTTGCTCCCCCTGCTCTACTCACTCAAAAGATCTCGCCACGCTCTCGGT
AAGGGGGGAAATGAACCCCTAAGTTGGAGAACGGCAACAGGGGAAGCTGGGGAGAAAAGG
AAGTGAGTGGGGGGGAGAAGCCTGGGAGAGCAGATCTCACAGGCCTGGGAGGTCTTGAGG
ACGGCTCTCAGCAGCAGCAGCAGCAGCAGCAGCACTCCTCCCAGGGTCCCTCACATCCCC
AGGTGGGCCTCGAAGGCACAGCTTCACAGCTTAGCTCTCCTCTGCTATTTTGCCTTCAGG
GCCCTGGGGAGTAGGGGTGAGGGGAGGAGGCAGGGCCAGTCTAGGAAGACTCTGGACTCC
TTGGCGAGCCGACAGTGGCGGTCTCAGAAGTCAAATTCGTCCAGGTCCCCCGTGCCCTCC
CCGTCACGGGAGCCCCACACCCGGCGGTAATTGCTCTCCAGCTTCTTCTGCCGCTGCCGC
TCTTTCTGCACCTCTTCAGCTCCCTGCACCAAGATATTGAAGAAAATCTCCTTGAGGTGT
TTTGTGTCCTCATCAGTCAGCCAACGTGCATCCTCTTCAGTCCCTTCCGTCCCTGGTTGG
ACAATTTTGATCTCAATTTTCCCTTCAGCTGTGAGTCCCTCCCTCTCCAGCAGCTCTTTC
ACCAGCCCCTCGATTTGTTTCAGCTGTGGGTTTTCTGGTTTCATCTGGAGGACAGTCAGA
TCCCGATTGGGGCCTCCGTGACGGAGCTTGATGATCCGGACCTGGACTCTGTGTTCAGGA
TCCTCCTCTGATGGCTGGGGAGACGGGGGAGGCTTTTGGGGGATAACCCTCCTTTTCCGG
TGCTTCTTCAACAGCTCTGGATTCTGTTTTTCCTCTAGCCTTTTGATGAGTTTGTCGAGA
GTGGATGTCAAGGCCAGTATAGCCCGATCACGCTCCGACTCCTTCTTCAGCCCATCTGGG
TCCAGCTCTTTCTCTGTCTCCTGGATGATGTTCTCCAGCTCCCGCTCCATGCCAGCCTTC
ACCTCGGCACGCAGCCGGTCTCGGTCTGATGGGAGCAGTATCCCTTCCCCCGATCACGCT
CCGACTCCTTCTTCAGCCCATCTGGGTCCAGCTCTTTCTCTGTCTCCTGGATGATGTTCT
CCAGCTCCCGCTCCATGCCAGCCTTCACCTCGGCACGCAGCCGGTCTCGGTCTGATGGGA
GCAGTATCCCTTCCAGTTCCTTCTCAAATTCCCCCAGCAACTGCCGTTCATCCTCATCGT
CTTCATCCTCATCGTCGTCCTCCTCTTCCACCTCGTTCTGATGTTCTGGGTCACTCTTTT
CCTTCACCTCTGGTTCCCTGGGAGGGGCTTCTGTGGCACCGTCTGCAGGCTGCTCTTGGC
CTGCATCTGGCTTCCCCTTTCTTGTTCCACCCTTCAGCTCCTCTATCAACTGAATCAAGT
CTGCGGGACTCCGAATGACTTTGACCTGCACATTGTTCTGAAAATCATCGGGAGAGCCTG
GCACTGGATCTGCAGCCTCAAGATTTGGCTCCTGCTCCTCAGCCTGCGCCTCCTCCCCTT
CTGGGGCCTGTTCTTCTGGCTCATGAAGCATCTTCCAGAAATCTGATTCCTTACTGTCCT
CCTTGGCTGGGCTTGCACCTGTTT
|
|
gi|61856324|ref|XP_581012.1| |
Protein identifier
|
gi|61856324|ref|XP_581012.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
3' of BC007254, - |
|
3' of BC007254, - |
Human gene identifier and UTR site,
human gene reading direction
|
3' of BC007254, - |
|
3' of BC007254, - |
|
18-810, gnl|bosTau2|chr5 (34296423-34295655) |
|
18-810, gnl|Hg17|chr12 (56401608-56400833) |
|
18-810, gnl|Mm7|chr10 (126593127-126593851) |
| |
|
1082-1279, gnl|bosTau2|chr5 (34293999-34293802) |
|
1082-1279, gnl|canFam2|chr10 (4768144-4768302) |
|
1082-1279, gnl|dasNov1|scaffold_913 (206031-205873) |
|
1082-1279, gnl|fr1|chrUn (40866900-40866767) |
|
1082-1279, gnl|hg17|chr12 (56399021-56399179) |
|
1082-1279, gnl|Hg17|chr12 (56399238-56399041) |
|
1082-1279, gnl|loxAfr1|scaffold_130834 (354-512) |
|
1082-1279, gnl|mm7|chr10 (126595618-126595465) |
|
1082-1279, gnl|Mm7|chr10 (126595404-126595601) |
|
1082-1279, gnl|monDom2|scaffold_283 (87391-87550) |
|
1082-1279, gnl|panTro1|chr10 (57643007-57643165) |
|
1082-1279, gnl|rheMac2|chr11 (54808041-54808199) |
|
1082-1279, gnl|rn3|chr7 (67070010-67069854) |
|
1082-1279, gnl|tetNig1|chr11 (6554196-6554333) |
| |
|
1424-1698, gnl|bosTau2|chr5 (34293525-34293248) |
|
1424-1698, gnl|Hg17|chr12 (56398471-56398194) |
|
1424-1698, gnl|Mm7|chr10 (126595819-126596117) |
| |
|
1826-1940, gnl|bosTau2|chr5 (34292027-34291915) |
|
1826-1940, gnl|Hg17|chr12 (56396571-56396460) |
|
1826-1940, gnl|Mm7|chr10 (126597081-126597187) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
18-810, gnl|bosTau2|chr5 (34296423-34295655) |
|
18-810, gnl|Hg17|chr12 (56401608-56400833) |
|
18-810, gnl|Mm7|chr10 (126593127-126593851) |
| |
|
1082-1279, gnl|bosTau2|chr5 (34293999-34293802) |
|
1082-1279, gnl|canFam2|chr10 (4768144-4768302) |
|
1082-1279, gnl|dasNov1|scaffold_913 (206031-205873) |
|
1082-1279, gnl|fr1|chrUn (40866900-40866767) |
|
1082-1279, gnl|hg17|chr12 (56399021-56399179) |
|
1082-1279, gnl|Hg17|chr12 (56399238-56399041) |
|
1082-1279, gnl|loxAfr1|scaffold_130834 (354-512) |
|
1082-1279, gnl|mm7|chr10 (126595618-126595465) |
|
1082-1279, gnl|Mm7|chr10 (126595404-126595601) |
|
1082-1279, gnl|monDom2|scaffold_283 (87391-87550) |
|
1082-1279, gnl|panTro1|chr10 (57643007-57643165) |
|
1082-1279, gnl|rheMac2|chr11 (54808041-54808199) |
|
1082-1279, gnl|rn3|chr7 (67070010-67069854) |
|
1082-1279, gnl|tetNig1|chr11 (6554196-6554333) |
| |
|
1424-1698, gnl|bosTau2|chr5 (34293525-34293248) |
|
1424-1698, gnl|Hg17|chr12 (56398471-56398194) |
|
1424-1698, gnl|Mm7|chr10 (126595819-126596117) |
| |
|
1826-1940, gnl|bosTau2|chr5 (34292027-34291915) |
|
1826-1940, gnl|Hg17|chr12 (56396571-56396460) |
|
1826-1940, gnl|Mm7|chr10 (126597081-126597187) |
|
amn (0.835422) |
|
eje (0.296501) |
|
cga (0.279096) |
|
cov (0.264306) |
|
ese (0.253004) |
|
cly (0.241284) |
|
clu (0.239292) |
|
cty (0.20816) |
|
fcc (0.197785) |
|
col (0.195008) |
|
fhi (0.169578) |
|
cki (0.165235) |
|
cli (0.152812) |
|
cag (0.151194) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
cbl (0.114797) |
|
jca (0.11396) |
|
amn (0.835422) |
|
eje (0.296501) |
|
cga (0.279096) |
|
cov (0.264306) |
|
ese (0.253004) |
|
cly (0.241284) |
|
clu (0.239292) |
|
cty (0.20816) |
|
fcc (0.197785) |
|
col (0.195008) |
|
fhi (0.169578) |
|
cki (0.165235) |
|
cli (0.152812) |
|
cag (0.151194) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
cbl (0.114797) |
|
jca (0.11396) |
