Non-Coding RNA Search

Ss1.1-Pig4-TMW8038B02.3

Sequence:


               
               GGTGGGGAAGGTAGAAGCACTGTTAGCATCATCCATGCTGGGGTTGATGAAGGAGCGGAT
CCCAGCAGAACTTCTGCTCTGGGACCCAGCAGGTTGCCTAGTACTATGCTTGGGGCCACT
CTTTCTAGGAGGAGAGGGTGGCCAAATGGCCCCATGAATGGTAGGCTGCTTAATTTCTTG
GAAGGGGTGATTGGATGGAACGAGGCCAGGAACCCCAGCCTGAGCGAGACTGCCGTGCAC
CCCACAGTCTGACTGCACAGAGCTGCCTCTGTTGGCAGAAGCGCTGAGGCTCCCCTTCCT
GTGTATTCAGAACCCGTGTTTGCCAAGATATTTTGCTTTCAATTCCAAGAGGAGCTCTGG
GAAAACCTGTGGATAAAACCAAATGCCAAACGTTGGACATTGTTTCTTTTCCTTTTCTCT
CTCTGATTGTTTTAATTGTTCTGTGGTGGTTTTAATGGATTTGAGACCCTGGAGCGGCAG
CTGCCTTTCTGATTTCCAGCTGCTTTTTGTGAATAATTTAAAAAGAAAAAAAAAAAAAGA
AACTTTACATTTTGGAGACAAACCTGTGTGAGTTTTTTATTGGTACAAACGTTGTATTTA
ACACTAGGGGTTTTGTACAGTTTTTTGCCTTTTCTACTAGAAAACAATGTAAAGTGATTT
CACAATGTGAAGAGAAAAAAAAATTGCCACTATGACCAAACGCACAGTCTGTTCTTGCAG
CAACAAACGGGATTCAATCAACTCAAAGTCGTGATTCAGCCGTAGAAATGCTTTTTCTTT
ACCTTGTTTGAGCTTTTCCTTTCTTTCCTGTTTTGATTTGCAAAAGAAAATGTCTTTTTT
GTGTGAAATTGTGTTGTACTATGTAGAAAATTATGGATTTTACTTTAATGGTTTAAAAAA
AAAAAAAGGCAAGAAGAGCCCTTATTGCTTTTCTGACCTGATCACAGAGTTTGTGTAGTG
GATTAAAAAAGAAAAAAAAAAATTGTTTGAAGCAAGGGAGTATGTGTTTAAAAGGATTCT
CCTTCCTTTTTTGTGTGTTTTTCCTTTTGTCCCAATGGGGAACCTAAATCTGTTTTAATT
GCACAGACACACGGACAAAAAGTCATTTTGTATCTGCCAAGTGTGGTACCTTCCTTTGTT
TATTTGCTATTAAACTGTTTGAGAAAAACTGAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGGGGAAGGTAGAAGCACTGTTAGCATCATCCATGCTGGGGTTGATGAAGGAGCGGAT
CCCAGCAGAACTTCTGCTCTGGGACCCAGCAGGTTGCCTAGTACTATGCTTGGGGCCACT
CTTTCTAGGAGGAGAGGGTGGCCAAATGGCCCCATGAATGGTAGGCTGCTTAATTTCTTG
GAAGGGGTGATTGGATGGAACGAGGCCAGGAACCCCAGCCTGAGCGAGACTGCCGTGCAC
CCCACAGTCTGACTGCACAGAGCTGCCTCTGTTGGCAGAAGCGCTGAGGCTCCCCTTCCT
GTGTATTCAGAACCCGTGTTTGCCAAGATATTTTGCTTTCAATTCCAAGAGGAGCTCTGG
GAAAACCTGTGGATAAAACCAAATGCCAAACGTTGGACATTGTTTCTTTTCCTTTTCTCT
CTCTGATTGTTTTAATTGTTCTGTGGTGGTTTTAATGGATTTGAGACCCTGGAGCGGCAG
CTGCCTTTCTGATTTCCAGCTGCTTTTTGTGAATAATTTAAAAAGAAAAAAAAAAAAAGA
AACTTTACATTTTGGAGACAAACCTGTGTGAGTTTTTTATTGGTACAAACGTTGTATTTA
ACACTAGGGGTTTTGTACAGTTTTTTGCCTTTTCTACTAGAAAACAATGTAAAGTGATTT
CACAATGTGAAGAGAAAAAAAAATTGCCACTATGACCAAACGCACAGTCTGTTCTTGCAG
CAACAAACGGGATTCAATCAACTCAAAGTCGTGATTCAGCCGTAGAAATGCTTTTTCTTT
ACCTTGTTTGAGCTTTTCCTTTCTTTCCTGTTTTGATTTGCAAAAGAAAATGTCTTTTTT
GTGTGAAATTGTGTTGTACTATGTAGAAAATTATGGATTTTACTTTAATGGTTTAAAAAA
AAAAAAAGGCAAGAAGAGCCCTTATTGCTTTTCTGACCTGATCACAGAGTTTGTGTAGTG
GATTAAAAAAGAAAAAAAAAAATTGTTTGAAGCAAGGGAGTATGTGTTTAAAAGGATTCT
CCTTCCTTTTTTGTGTGTTTTTCCTTTTGTCCCAATGGGGAACCTAAATCTGTTTTAATT
GCACAGACACACGGACAAAAAGTCATTTTGTATCTGCCAAGTGTGGTACCTTCCTTTGTT
TATTTGCTATTAAACTGTTTGAGAAAAACTGAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               79-310, - strand, RNAz p=0.979509
               

               
               869-984, - strand, RNAz p=0.874049

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-310, - strand, RNAz p=0.979509
               

               
               869-984, - strand, RNAz p=0.874049

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1171, gnl|bosTau2|chr15 (48858347-48859520)
               

               
               1-1171, gnl|Hg17|chr11 (47445228-47444062)
               

               
               1-1171, gnl|Mm7|chr2 (90869073-90870216)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1171, gnl|bosTau2|chr15 (48858347-48859520)
               

               
               1-1171, gnl|Hg17|chr11 (47445228-47444062)
               

               
               1-1171, gnl|Mm7|chr2 (90869073-90870216)

Expressed library(ies): 28 entry(ies)

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Expressed library(ies): 28 entry(ies)

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               ece (0.45861)
               

               
               cut (0.339847)
               

               
               lun (0.300978)
               

               
               lin (0.291206)
               

               
               che (0.272628)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               med (0.232504)
               

               
               ecc (0.23007)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               sag (0.182715)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 28 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.45861)
               

               
               cut (0.339847)
               

               
               lun (0.300978)
               

               
               lin (0.291206)
               

               
               che (0.272628)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               med (0.232504)
               

               
               ecc (0.23007)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               sag (0.182715)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	79-310, - strand, RNAz p=0.979509
	869-984, - strand, RNAz p=0.874049

	1-1171, gnl\|bosTau2\|chr15 (48858347-48859520)
	1-1171, gnl\|Hg17\|chr11 (47445228-47444062)
	1-1171, gnl\|Mm7\|chr2 (90869073-90870216)

	ece (0.45861)
	cut (0.339847)
	lun (0.300978)
	lin (0.291206)
	che (0.272628)
	thg (0.253582)
	tra (0.246184)
	med (0.232504)
	ecc (0.23007)
	mas (0.210305)
	cty (0.20816)
	sag (0.182715)
	eye (0.170503)
	cje (0.165235)
	tbr (0.154178)
	fat (0.147427)
	liv (0.146284)
	hyp (0.142837)
	lnt (0.142308)
	hlv (0.139256)
	pla (0.133672)
	kid (0.129735)
	ret (0.128733)
	sug (0.127291)
	pgl (0.118483)
	nbm (0.0993246)
	jej (0.0989218)
	ldo (0.0970026)