Non-Coding RNA Search

Ss1.1-Pig4-TMW8038B12.5

Sequence:


               
               TGAAGTTATTAAAGATGGCTATGAAAACGCTAGGCGTCTATGTGACTTGTATTATATTAA
TTCTCCTGAACTAGAACTTGAAGAACTAAATGCAAAATCACCAGGACAGCCAATACAAGT
GGTTTATGTACCATCCCATCTCTATCACATGGTGTTTGAACTTTTCAAGAATGCAATGAG
AGCAACGATGGAGCACCACGCTGACAAAGGGGTTTACCCGCCTATTCAAGTCCACGTCAC
ACTGGGTAATGAGGATTTGACTGTGAAGATGAGTGACCGAGGAGGGGGTGTTCCTCTGAG
GAAGATTGACAGACTCTTCAACTACATGTACTCCACTGCACCCCGGCCTCGTGTCGAGAC
GTCGCGAGCAGTGCCTCTGGCTGGTTTTGGTTATGGATTGCCCATATCACGCCTTTATGC
ACAGTACTTCCAAGGAGATCTAAAGTTATACTCCCTAGAAGGTTATGGGACAGATGCAGT
TATCTACATTAAGGCTCTGTCCACAGACTCAATAGAAAGACTCCCAGTGTATAACAAAGC
TGCCTGGAAGCATTACAACACCAACCATGAGGCTGATGACTGGTGTGTCCCCAGCAGAGA
ACCAAAAGACATGACAACATTCCGCAGTGCCTAGACACACTTGATACCCTTGGAAAATCC
AGATGTGGCTTTTGCATTAAATTTGGAAGGGATGGTGTTCAGAACTACATTATACCAAAT
ACTTCATGTGTCGTTTTCACAGTTCACTATCTGGGTAGAATAAGTGGCAAGTCAGTTCCA
TTTATGCCTGTTCAATCTCCTCAAGGACAACATCGTATCTACATTACACTTAATATTTTC
ACAGTTAATTGAACCTATTTTTAAACAACTAGTTTTGCTCACCTTTCTCTTTAGAGTGGA
TTTCAGAAGCGTAGAAAAATCTTTGGGTTTCTACGGGAAGCTATGTGGTTTTTTAAAAAA
TTCTTTTATGTCTGCTGGAAACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAGTTATTAAAGATGGCTATGAAAACGCTAGGCGTCTATGTGACTTGTATTATATTAA
TTCTCCTGAACTAGAACTTGAAGAACTAAATGCAAAATCACCAGGACAGCCAATACAAGT
GGTTTATGTACCATCCCATCTCTATCACATGGTGTTTGAACTTTTCAAGAATGCAATGAG
AGCAACGATGGAGCACCACGCTGACAAAGGGGTTTACCCGCCTATTCAAGTCCACGTCAC
ACTGGGTAATGAGGATTTGACTGTGAAGATGAGTGACCGAGGAGGGGGTGTTCCTCTGAG
GAAGATTGACAGACTCTTCAACTACATGTACTCCACTGCACCCCGGCCTCGTGTCGAGAC
GTCGCGAGCAGTGCCTCTGGCTGGTTTTGGTTATGGATTGCCCATATCACGCCTTTATGC
ACAGTACTTCCAAGGAGATCTAAAGTTATACTCCCTAGAAGGTTATGGGACAGATGCAGT
TATCTACATTAAGGCTCTGTCCACAGACTCAATAGAAAGACTCCCAGTGTATAACAAAGC
TGCCTGGAAGCATTACAACACCAACCATGAGGCTGATGACTGGTGTGTCCCCAGCAGAGA
ACCAAAAGACATGACAACATTCCGCAGTGCCTAGACACACTTGATACCCTTGGAAAATCC
AGATGTGGCTTTTGCATTAAATTTGGAAGGGATGGTGTTCAGAACTACATTATACCAAAT
ACTTCATGTGTCGTTTTCACAGTTCACTATCTGGGTAGAATAAGTGGCAAGTCAGTTCCA
TTTATGCCTGTTCAATCTCCTCAAGGACAACATCGTATCTACATTACACTTAATATTTTC
ACAGTTAATTGAACCTATTTTTAAACAACTAGTTTTGCTCACCTTTCTCTTTAGAGTGGA
TTTCAGAAGCGTAGAAAAATCTTTGGGTTTCTACGGGAAGCTATGTGGTTTTTTAAAAAA
TTCTTTTATGTCTGCTGGAAACAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57102634|ref|XP_534032.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57102634|ref|XP_534032.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               6-610, gnl|bosTau2|chr20 (2117336-2117930)
               

               
               6-610, gnl|Hg17|chr14 (91246103-91246690)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-610, gnl|bosTau2|chr20 (2117336-2117930)
               

               
               6-610, gnl|Hg17|chr14 (91246103-91246690)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pan (0.23596)
               

               
               clu (0.119646)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pan (0.23596)
               

               
               clu (0.119646)

	6-610, gnl\|bosTau2\|chr20 (2117336-2117930)
	6-610, gnl\|Hg17\|chr14 (91246103-91246690)