Ss1.1-Pig4-TMW8038B23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGGCAGGCAGGCAGGCCCCCTCCCTTGCAGAACTGTTAACTTATTCAGCTCGCTGGCTT TGCACAGCCTGACCTGGGCCCAGCCCTGAGCCCCGGGTGGGCACAGGTGGGCAGACCTGG GGACCCACCACTGTCAGCAGCAGCGGGGGTCCCCCCCCCATGGGGCCGGCACAATCACAG GGCCGGGCGGAGCCGCAGCTGCAAACTCTGACACAAAAGACGTGCCTTAAGGAACCCGCC GTCGTGCCCAGGTGCCCCCTGGGGCAGCCAGCTTGGCCCCTTGGCCCCAAAGGCTGCATC TCCTTCCCTTCCCAGCCCCGCCCCTGCCACCCCAGGGGGCAGGCAGGCAGGCCCCCTCCC TTGCAGAACTGTTAACTTATTCAGCTCGCTGGCTTTGCACAGCCTGACCTGGGTGCTCCG CTGGCTCAGATCCAAGACCCCCGAGTCCTGGGCCCTCCTCGCCGCTGGTTTGTAATGGAA CCTCCATGCTCCTACTCTCCCCGGAGACCGTGCTTCTTCTCCGTGCGTGCGACCCCTGCC CCCCCACATGACTATTGTGCGATTTGTGAGCGGAGTCGGTAACTTGTTGGGTTTTTTTCC AACCATCATGGCCTTATCTGTTCCGGTTTTCTCAGTGTTTTCAACCTGTGAGATAGATGT TTATGGCAAAAAGCGAAAAATAGAAAAAAGAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGGCAGGCAGGCAGGCCCCCTCCCTTGCAGAACTGTTAACTTATTCAGCTCGCTGGCTT TGCACAGCCTGACCTGGGCCCAGCCCTGAGCCCCGGGTGGGCACAGGTGGGCAGACCTGG GGACCCACCACTGTCAGCAGCAGCGGGGGTCCCCCCCCCATGGGGCCGGCACAATCACAG GGCCGGGCGGAGCCGCAGCTGCAAACTCTGACACAAAAGACGTGCCTTAAGGAACCCGCC GTCGTGCCCAGGTGCCCCCTGGGGCAGCCAGCTTGGCCCCTTGGCCCCAAAGGCTGCATC TCCTTCCCTTCCCAGCCCCGCCCCTGCCACCCCAGGGGGCAGGCAGGCAGGCCCCCTCCC TTGCAGAACTGTTAACTTATTCAGCTCGCTGGCTTTGCACAGCCTGACCTGGGTGCTCCG CTGGCTCAGATCCAAGACCCCCGAGTCCTGGGCCCTCCTCGCCGCTGGTTTGTAATGGAA CCTCCATGCTCCTACTCTCCCCGGAGACCGTGCTTCTTCTCCGTGCGTGCGACCCCTGCC CCCCCACATGACTATTGTGCGATTTGTGAGCGGAGTCGGTAACTTGTTGGGTTTTTTTCC AACCATCATGGCCTTATCTGTTCCGGTTTTCTCAGTGTTTTCAACCTGTGAGATAGATGT TTATGGCAAAAAGCGAAAAATAGAAAAAAGAAAAAA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 26-144, - strand, RNAz p=0.564702 | |
| 230-382, - strand, RNAz p=0.921339 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 26-144, - strand, RNAz p=0.564702 | |
| 230-382, - strand, RNAz p=0.921339 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 1-144, gnl|bosTau2|chr7 (7839216-7839360) | |
| 1-144, gnl|canFam2|chr20 (51520070-51519754) | |
| 1-144, gnl|echTel1|scaffold_301790 (15307-14996) | |
| 1-144, gnl|hg17|chr19 (13934036-13934352) | |
| 1-144, gnl|Hg17|chr19 (13934176-13934035) | |
| 1-144, gnl|loxAfr1|scaffold_35592 (2539-2223) | |
| 1-144, gnl|mm7|chr8 (82679143-82678887) | |
| 1-144, gnl|Mm7|chr8 (82679024-82679145) | |
| 1-144, gnl|monDom2|scaffold_159 (1219858-1220341) | |
| 1-144, gnl|panTro1|chr20_random (3003519-3003211) | |
| 1-144, gnl|rn3|chr19 (25750850-25751102) | |
| 151-413, gnl|bosTau2|chr7 (7839027-7839293) | |
| 151-413, gnl|canFam2|chr20 (51520070-51519754) | |
| 151-413, gnl|echTel1|scaffold_301790 (15307-14996) | |
| 151-413, gnl|hg17|chr19 (13934036-13934352) | |
| 151-413, gnl|Hg17|chr19 (13934367-13934099) | |
| 151-413, gnl|loxAfr1|scaffold_35592 (2539-2223) | |
| 151-413, gnl|mm7|chr8 (82679143-82678887) | |
| 151-413, gnl|monDom2|scaffold_159 (1219858-1220341) | |
| 151-413, gnl|panTro1|chr20_random (3003519-3003211) | |
| 151-413, gnl|rn3|chr19 (25750850-25751102) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-144, gnl|bosTau2|chr7 (7839216-7839360) | |
| 1-144, gnl|canFam2|chr20 (51520070-51519754) | |
| 1-144, gnl|echTel1|scaffold_301790 (15307-14996) | |
| 1-144, gnl|hg17|chr19 (13934036-13934352) | |
| 1-144, gnl|Hg17|chr19 (13934176-13934035) | |
| 1-144, gnl|loxAfr1|scaffold_35592 (2539-2223) | |
| 1-144, gnl|mm7|chr8 (82679143-82678887) | |
| 1-144, gnl|Mm7|chr8 (82679024-82679145) | |
| 1-144, gnl|monDom2|scaffold_159 (1219858-1220341) | |
| 1-144, gnl|panTro1|chr20_random (3003519-3003211) | |
| 1-144, gnl|rn3|chr19 (25750850-25751102) | |
| 151-413, gnl|bosTau2|chr7 (7839027-7839293) | |
| 151-413, gnl|canFam2|chr20 (51520070-51519754) | |
| 151-413, gnl|echTel1|scaffold_301790 (15307-14996) | |
| 151-413, gnl|hg17|chr19 (13934036-13934352) | |
| 151-413, gnl|Hg17|chr19 (13934367-13934099) | |
| 151-413, gnl|loxAfr1|scaffold_35592 (2539-2223) | |
| 151-413, gnl|mm7|chr8 (82679143-82678887) | |
| 151-413, gnl|monDom2|scaffold_159 (1219858-1220341) | |
| 151-413, gnl|panTro1|chr20_random (3003519-3003211) | |
| 151-413, gnl|rn3|chr19 (25750850-25751102) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fbs (0.175346) | |
| eye (0.170503) | |
| cly (0.120642) |