Ss1.1-Pig4-TMW8038C02.5
|
TGGGCCTGGTGTGGGGATCTGTCCGTGTGGACTTCGGTCCAGTGTGGCGGTGTACTGCAA
ACATGGCGTTGGCGGTGCTGGCGCTAAGGACCCGGGCAGCAGTTACAGCCCTGCTGAGCC
CCCCTCAGGCTGCAGCTCTTGCTGTCAGATATGCATCCAAGAAGACAGGTGGCAGCTCCA
AGAACCTCGGTGGAAAGTCACCAGGCAAACGCTTTGGCATCAAGAAAATGGAGGGTCACT
ATGTTCATGCTGGCAACATCCTTGCGACTCAGCGCCACTTCCGCTGGCACCCAGGTGCCC
ATGTGGGCCTGGGGAAGAACAAGTGCCTGTATGCCCTGGAGGAGGGAGTAGTCCGCTACA
CTAAGGAGGTCTACGTGCCCAATCCCAGCAACTCGGAGGCCGTGGATCTGGTCACCAGGC
TGCCCCAGGGGGCTGTGCTGTACAAGACTTTCGTCCACGTGGTTCCTGCCAAGCCTGAGG
GCACCTTCAAACTGGTAGCTATGCTTTGAGCTCCCAGAGGAGGTCTTTGCACAGAGATTG
GAGCCCAGATGACAAGAGAGAGCCTGGTACCAGAAGTCATCAAGGGTTGGAGTGGTGACA
AGCCCTCCCAAGGCAGAAGTCTGCCCGCGGTGACTGTGGGAAGGCTCTGTGAGGTGACTG
GCTGGGAGGCCCTTGGGGAGACCTGAGCCGGGGCCAGAAATAAAAGTTAGCTGTAGTTTG
TGCTGTTGGAGGACAAGCCCTAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGGGCCTGGTGTGGGGATCTGTCCGTGTGGACTTCGGTCCAGTGTGGCGGTGTACTGCAA
ACATGGCGTTGGCGGTGCTGGCGCTAAGGACCCGGGCAGCAGTTACAGCCCTGCTGAGCC
CCCCTCAGGCTGCAGCTCTTGCTGTCAGATATGCATCCAAGAAGACAGGTGGCAGCTCCA
AGAACCTCGGTGGAAAGTCACCAGGCAAACGCTTTGGCATCAAGAAAATGGAGGGTCACT
ATGTTCATGCTGGCAACATCCTTGCGACTCAGCGCCACTTCCGCTGGCACCCAGGTGCCC
ATGTGGGCCTGGGGAAGAACAAGTGCCTGTATGCCCTGGAGGAGGGAGTAGTCCGCTACA
CTAAGGAGGTCTACGTGCCCAATCCCAGCAACTCGGAGGCCGTGGATCTGGTCACCAGGC
TGCCCCAGGGGGCTGTGCTGTACAAGACTTTCGTCCACGTGGTTCCTGCCAAGCCTGAGG
GCACCTTCAAACTGGTAGCTATGCTTTGAGCTCCCAGAGGAGGTCTTTGCACAGAGATTG
GAGCCCAGATGACAAGAGAGAGCCTGGTACCAGAAGTCATCAAGGGTTGGAGTGGTGACA
AGCCCTCCCAAGGCAGAAGTCTGCCCGCGGTGACTGTGGGAAGGCTCTGTGAGGTGACTG
GCTGGGAGGCCCTTGGGGAGACCTGAGCCGGGGCCAGAAATAAAAGTTAGCTGTAGTTTG
TGCTGTTGGAGGACAAGCCCTAAA
|
|
gi|22547129|ref|NP_683411.1| |
Protein identifier
|
gi|22547129|ref|NP_683411.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
99-236, gnl|bosTau2|chr19 (29021412-29021549) |
|
99-236, gnl|canFam2|chr9 (29664603-29664699) |
|
99-236, gnl|danRer3|chrUn (115107267-115107358) |
|
99-236, gnl|dasNov1|scaffold_7118 (40668-40572) |
|
99-236, gnl|echTel1|scaffold_268541 (4707-4803) |
|
99-236, gnl|fr1|chrUn (316791570-316791666) |
|
99-236, gnl|galGal2|chr3_random (1096810-1096714) |
|
99-236, gnl|hg17|chr17 (45802812-45802908) |
|
99-236, gnl|Hg17|chr17 (45802950-45802813) |
|
99-236, gnl|loxAfr1|scaffold_77335 (7951-8047) |
|
99-236, gnl|mm7|chr11 (94765662-94765566) |
|
99-236, gnl|Mm7|chr11 (94765522-94765659) |
|
99-236, gnl|monDom2|scaffold_230 (98075-98171) |
|
99-236, gnl|oryCun1|scaffold_186320 (48418-48514) |
|
99-236, gnl|panTro1|chr19_random (31439713-31439809) |
|
99-236, gnl|rheMac2|chr16 (34616835-34616931) |
|
99-236, gnl|rn3|chr10 (83304487-83304391) |
|
99-236, gnl|tetNig1|chrUn_random (149750717-149750622) |
|
99-236, gnl|xenTro1|scaffold_485 (681559-681463) |
| |
|
300-739, gnl|bosTau2|chr19 (29023745-29024168) |
|
300-739, gnl|Hg17|chr17 (45800661-45800223) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
99-236, gnl|bosTau2|chr19 (29021412-29021549) |
|
99-236, gnl|canFam2|chr9 (29664603-29664699) |
|
99-236, gnl|danRer3|chrUn (115107267-115107358) |
|
99-236, gnl|dasNov1|scaffold_7118 (40668-40572) |
|
99-236, gnl|echTel1|scaffold_268541 (4707-4803) |
|
99-236, gnl|fr1|chrUn (316791570-316791666) |
|
99-236, gnl|galGal2|chr3_random (1096810-1096714) |
|
99-236, gnl|hg17|chr17 (45802812-45802908) |
|
99-236, gnl|Hg17|chr17 (45802950-45802813) |
|
99-236, gnl|loxAfr1|scaffold_77335 (7951-8047) |
|
99-236, gnl|mm7|chr11 (94765662-94765566) |
|
99-236, gnl|Mm7|chr11 (94765522-94765659) |
|
99-236, gnl|monDom2|scaffold_230 (98075-98171) |
|
99-236, gnl|oryCun1|scaffold_186320 (48418-48514) |
|
99-236, gnl|panTro1|chr19_random (31439713-31439809) |
|
99-236, gnl|rheMac2|chr16 (34616835-34616931) |
|
99-236, gnl|rn3|chr10 (83304487-83304391) |
|
99-236, gnl|tetNig1|chrUn_random (149750717-149750622) |
|
99-236, gnl|xenTro1|scaffold_485 (681559-681463) |
| |
|
300-739, gnl|bosTau2|chr19 (29023745-29024168) |
|
300-739, gnl|Hg17|chr17 (45800661-45800223) |
|
pla (0.401016) |
|
ill (0.351185) |
|
cje (0.330469) |
|
cst (0.280073) |
|
ese (0.253004) |
|
pgl (0.236967) |
|
nms (0.213858) |
|
eje (0.197668) |
|
col (0.195008) |
|
nlu (0.191681) |
|
nep (0.183925) |
|
fty (0.17584) |
|
ton (0.1755) |
|
nje (0.16592) |
|
nco (0.161734) |
|
eli (0.151814) |
|
hyp (0.142837) |
|
csk (0.140746) |
|
che (0.136314) |
|
ute (0.132784) |
|
ret (0.128733) |
|
sug (0.127291) |
|
ebs (0.118301) |
|
med (0.116252) |
|
jej (0.0989218) |
|
pla (0.401016) |
|
ill (0.351185) |
|
cje (0.330469) |
|
cst (0.280073) |
|
ese (0.253004) |
|
pgl (0.236967) |
|
nms (0.213858) |
|
eje (0.197668) |
|
col (0.195008) |
|
nlu (0.191681) |
|
nep (0.183925) |
|
fty (0.17584) |
|
ton (0.1755) |
|
nje (0.16592) |
|
nco (0.161734) |
|
eli (0.151814) |
|
hyp (0.142837) |
|
csk (0.140746) |
|
che (0.136314) |
|
ute (0.132784) |
|
ret (0.128733) |
|
sug (0.127291) |
|
ebs (0.118301) |
|
med (0.116252) |
|
jej (0.0989218) |
