Non-Coding RNA Search

Ss1.1-Pig4-TMW8038C03.5

Sequence:


               
               AAGAAGCAAACAAGTATGAGCGAACCATTGAAGAACTGTCACATGCACGTAATTTGAGTA
CCTCTGCTTTACAGCTGGAACATGAGCGTTTAATTAAACTCAATCAAGAGAAAGACTTGG
AAATAGTGGAACTCAAAAAGAATATTGAGCAGATGGATACTGATCATAAAGAAACTAAGG
GAATTTTGTCATCTAGTTTAGAAGAGCAGAAGCAGTTGACCCAACTTGTAAATGAGAAAG
AGGTTTTTATTGAAAAACTTAAAGGAAGAAATTTAGAGCTTCAGGAGGAATTAGGTAAAT
ATACGCAGACCTTAAGAAAAAATGAAACTTTAAGGCAAACCATAGAGGAAAAAGACAGAA
GTCTTGGATCCATGAAAGAAGAAAACAATCACCTGAAAGAGGAACTGGAACGACTCAGGG
AACAGCAGAGTCGAGCTGCACCTGTGGCTGAGCCTAAACCTCTCGATAGTGTTACAGGGC
TCGAATCTGAGGTACTGCAACTGAATGTAATAAAGGATAATCTTGAAAAGGAAATAAAAC
ATCATCAAAAGGTAATTGAAGATCAAAACCAGAGTAAAATACAACTGCTTCAGTCTTTAC
AGGAGCAGAAGAAGGAAATGGATGAGTTTAAGTATCAGCATGAGCAAATGAGTGTCTCAC
ACACCCAACTCTTTTTAGAGAAAGATGAGGAAATTAAGAATTTGCAAAAAACAATTGAAC
AAATCAAAACCCAGTTGCATGAAGAAAGACAGGATGTTCAAACAGAGAATTCTGATATTT
TTCAAGAAACGAAAGTTCAGGGCCTTAATATAGAAAATGGAAGTGAAAAGCATGACTTAT
CCAAGGCCGAAACGGAACGATTAGTAAAAGGAATAAAAGAACGAGAATTGGAGATTAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAAGCAAACAAGTATGAGCGAACCATTGAAGAACTGTCACATGCACGTAATTTGAGTA
CCTCTGCTTTACAGCTGGAACATGAGCGTTTAATTAAACTCAATCAAGAGAAAGACTTGG
AAATAGTGGAACTCAAAAAGAATATTGAGCAGATGGATACTGATCATAAAGAAACTAAGG
GAATTTTGTCATCTAGTTTAGAAGAGCAGAAGCAGTTGACCCAACTTGTAAATGAGAAAG
AGGTTTTTATTGAAAAACTTAAAGGAAGAAATTTAGAGCTTCAGGAGGAATTAGGTAAAT
ATACGCAGACCTTAAGAAAAAATGAAACTTTAAGGCAAACCATAGAGGAAAAAGACAGAA
GTCTTGGATCCATGAAAGAAGAAAACAATCACCTGAAAGAGGAACTGGAACGACTCAGGG
AACAGCAGAGTCGAGCTGCACCTGTGGCTGAGCCTAAACCTCTCGATAGTGTTACAGGGC
TCGAATCTGAGGTACTGCAACTGAATGTAATAAAGGATAATCTTGAAAAGGAAATAAAAC
ATCATCAAAAGGTAATTGAAGATCAAAACCAGAGTAAAATACAACTGCTTCAGTCTTTAC
AGGAGCAGAAGAAGGAAATGGATGAGTTTAAGTATCAGCATGAGCAAATGAGTGTCTCAC
ACACCCAACTCTTTTTAGAGAAAGATGAGGAAATTAAGAATTTGCAAAAAACAATTGAAC
AAATCAAAACCCAGTTGCATGAAGAAAGACAGGATGTTCAAACAGAGAATTCTGATATTT
TTCAAGAAACGAAAGTTCAGGGCCTTAATATAGAAAATGGAAGTGAAAAGCATGACTTAT
CCAAGGCCGAAACGGAACGATTAGTAAAAGGAATAAAAGAACGAGAATTGGAGATTAAAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               281-400, - strand, RNAz p=0.988867

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               281-400, - strand, RNAz p=0.988867

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               282-400, DA508361 FCBBF3 Homo sapiens cDNA clone FCBBF3024610 5', mRNA 
(dbj|DA508361.1|), blast E-value=1e-28, identity=89.08% 
               

               
               282-400, DA861749 PLACE7 Homo sapiens cDNA clone PLACE7014603 5', mRNA 
(dbj|DA861749.1|), blast E-value=1e-28, identity=89.08% 
               

               
               282-400, AGENCOURT_7914697 NIH_MGC_72 Homo sapiens cDNA clone IMAGE 
(gb|BU171803.1|), blast E-value=1e-28, identity=89.08% 
               

               
               282-400, fs25d01.y1 Human Lens cDNA (Normalized) (gb|CD675579.1|), blast 
E-value=1e-28, identity=89.08% 
               

               
               282-400, 17000600025781 GRN_PREHEP Homo sapiens cDNA 5', mRNA sequence 
(gb|CN431789.1|), blast E-value=1e-28, identity=89.08% 
               

               
               281-400, 001027BTMA004608HT BTMA Bos taurus cDNA, mRNA sequence 
(gb|DY189311.1|), blast E-value=1e-38, identity=92.5%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               282-400, DA508361 FCBBF3 Homo sapiens cDNA clone FCBBF3024610 5', mRNA 
(dbj|DA508361.1|), blast E-value=1e-28, identity=89.08% 
               

               
               282-400, DA861749 PLACE7 Homo sapiens cDNA clone PLACE7014603 5', mRNA 
(dbj|DA861749.1|), blast E-value=1e-28, identity=89.08% 
               

               
               282-400, AGENCOURT_7914697 NIH_MGC_72 Homo sapiens cDNA clone IMAGE 
(gb|BU171803.1|), blast E-value=1e-28, identity=89.08% 
               

               
               282-400, fs25d01.y1 Human Lens cDNA (Normalized) (gb|CD675579.1|), blast 
E-value=1e-28, identity=89.08% 
               

               
               282-400, 17000600025781 GRN_PREHEP Homo sapiens cDNA 5', mRNA sequence 
(gb|CN431789.1|), blast E-value=1e-28, identity=89.08% 
               

               
               281-400, 001027BTMA004608HT BTMA Bos taurus cDNA, mRNA sequence 
(gb|DY189311.1|), blast E-value=1e-38, identity=92.5%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-900, gnl|bosTau2|chr21 (36455818-36454919)
               

               
               1-900, gnl|Hg17|chr14 (91541872-91540973)
               

               
               1-900, gnl|Mm7|chr12 (99380964-99380065)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-900, gnl|bosTau2|chr21 (36455818-36454919)
               

               
               1-900, gnl|Hg17|chr14 (91541872-91540973)
               

               
               1-900, gnl|Mm7|chr12 (99380964-99380065)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sag (0.182715)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)

	282-400, DA508361 FCBBF3 Homo sapiens cDNA clone FCBBF3024610 5', mRNA (dbj\|DA508361.1\|), blast E-value=1e-28, identity=89.08%
	282-400, DA861749 PLACE7 Homo sapiens cDNA clone PLACE7014603 5', mRNA (dbj\|DA861749.1\|), blast E-value=1e-28, identity=89.08%
	282-400, AGENCOURT_7914697 NIH_MGC_72 Homo sapiens cDNA clone IMAGE (gb\|BU171803.1\|), blast E-value=1e-28, identity=89.08%
	282-400, fs25d01.y1 Human Lens cDNA (Normalized) (gb\|CD675579.1\|), blast E-value=1e-28, identity=89.08%
	282-400, 17000600025781 GRN_PREHEP Homo sapiens cDNA 5', mRNA sequence (gb\|CN431789.1\|), blast E-value=1e-28, identity=89.08%
	281-400, 001027BTMA004608HT BTMA Bos taurus cDNA, mRNA sequence (gb\|DY189311.1\|), blast E-value=1e-38, identity=92.5%

	1-900, gnl\|bosTau2\|chr21 (36455818-36454919)
	1-900, gnl\|Hg17\|chr14 (91541872-91540973)
	1-900, gnl\|Mm7\|chr12 (99380964-99380065)