Non-Coding RNA Search

Ss1.1-Pig4-TMW8038C06.5

Sequence:


               
               TGGCTCCGTACTGAGTGTCTGGACGAAAGTAGAGGGTGTTCTAGCATCTGTCAGTGGCAC
AAATGTGAAAATGCAGATAGTTCGGCTAAGAACAGAGGATGGACAACGGATTGTAGGTTT
GATCATTCCTGCAAATTGTGTGTCTCCTCTTGTAAATCTCCTGTCAACTTCAGACCAGTC
TCAACAGCTTGCAGTCCAACAGAAACAGCTTTGGCAGCAGCGTCACCCCCAGAGTATCGC
CAATTTGAGCAACGCATAAGAACAGACAGGTTTTAACATGGATGTATCTGAAATGCTGTT
GAAGCATATCATTTGCATAAAAATCAGGGACAGTTTCCAAAGAATTATAATTTTTTTTCA
GTTGTGCTCTCTCTAGTTAATTTTTTTGGGAATAAGGACAAACCTGGAATAGATAGCAAA
ACTGAAAATCAGCAGTGCCGATGGTGGTACATATGTCTTTCCTTTTGCTTTTCCCATGGT
ACTTCCCATATGCATTTACTTTGGGTGAGCAGAGGGGTATGTGTGCTTGTGTGTCCGTCT
GTTTGTTTGTTTGTGAGTTTGTTAAAAGCTATGAACCACAATTGGTTTTAAAATGCTTGG
AACTTCCCAAACTGGCTTTACTTTATTTTATACAGTGCTCAGGGTTAACGCAGTACATCC
ATGCCATTGCTATGGGACTTATCCCCGAATGCATGTGTTTTGAGTCTATAAATAGAGAAA
ATATATATTGGTTTCTTTTTCCAACTTATTAAAACAGTAGGTTTATTAAAGCATGAAATG
AAAGGTTGCATATCATGCATTCAGGTTCTTTTCTAGTTTTTGTTCTGACAGTGCATGTCT
TTGAAAGCATGCGTAAACAAGATTAACACAGATGTCAAGTAAGAGAGAAACATTTGTAGA
TGTACAGCATTGGTTATTGCATTTTTATAGTGTTTATACCTGGGTATTGCTTCAAACCCT
GCAGAATCCACTTCCCCCATTCTCCCTTCCTGCCCCAGGTTTCTTGTCAAGGTAATGAGT
ACATACATTTTTTTTGTGATAAAACTCTTAAAAGTTAATTTTAATGTATTAATAGTATTC
CTAATGTGTGCTGCAAAATGGCTACAAGCCCGCTTTTCTTAAAATTACATTTTTCTTAAG
GATAGTTGTAGAAAGAAGTACAAATTGGCTTCCATCTTGCAAACCATCTTTTTTTTTTTT
TTTACTTCTTTATCTTCATTTGCTTTGTCACTCGTAAAATGGAAACCGTACTTGAGTTGT
AAACTAGACAATGAGGAAACACTTGAGGCTTCTGCTGTATGTTTATTTCTTGTTGTTATT
GTTGTTACCCAGTAACTTGAATATTGTTTTAATGTGTTGTTAAGACATTGTAGAGTTTAT
CTCAAGCTGTTAAAAATGGTAATGTACAAATGTGAATAGACACTTATCTATAATATGGGT
AAGTTTTGTTTCGCCTATAATAGATGTTTATAAAAACAAGTGAGGGGACAATTGGTCTTT
TTGTTTCCTTTTTATTTCTTCCCCCTTTTTTGCTTGCACAGGTTGCACTATTGAAAAATT
GAGATTGTATAAAACCTGGTCAAAAGCTGCAAGATACCACAGTCTTGTAGATGTCAAATA
AAAATTTATTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCTCCGTACTGAGTGTCTGGACGAAAGTAGAGGGTGTTCTAGCATCTGTCAGTGGCAC
AAATGTGAAAATGCAGATAGTTCGGCTAAGAACAGAGGATGGACAACGGATTGTAGGTTT
GATCATTCCTGCAAATTGTGTGTCTCCTCTTGTAAATCTCCTGTCAACTTCAGACCAGTC
TCAACAGCTTGCAGTCCAACAGAAACAGCTTTGGCAGCAGCGTCACCCCCAGAGTATCGC
CAATTTGAGCAACGCATAAGAACAGACAGGTTTTAACATGGATGTATCTGAAATGCTGTT
GAAGCATATCATTTGCATAAAAATCAGGGACAGTTTCCAAAGAATTATAATTTTTTTTCA
GTTGTGCTCTCTCTAGTTAATTTTTTTGGGAATAAGGACAAACCTGGAATAGATAGCAAA
ACTGAAAATCAGCAGTGCCGATGGTGGTACATATGTCTTTCCTTTTGCTTTTCCCATGGT
ACTTCCCATATGCATTTACTTTGGGTGAGCAGAGGGGTATGTGTGCTTGTGTGTCCGTCT
GTTTGTTTGTTTGTGAGTTTGTTAAAAGCTATGAACCACAATTGGTTTTAAAATGCTTGG
AACTTCCCAAACTGGCTTTACTTTATTTTATACAGTGCTCAGGGTTAACGCAGTACATCC
ATGCCATTGCTATGGGACTTATCCCCGAATGCATGTGTTTTGAGTCTATAAATAGAGAAA
ATATATATTGGTTTCTTTTTCCAACTTATTAAAACAGTAGGTTTATTAAAGCATGAAATG
AAAGGTTGCATATCATGCATTCAGGTTCTTTTCTAGTTTTTGTTCTGACAGTGCATGTCT
TTGAAAGCATGCGTAAACAAGATTAACACAGATGTCAAGTAAGAGAGAAACATTTGTAGA
TGTACAGCATTGGTTATTGCATTTTTATAGTGTTTATACCTGGGTATTGCTTCAAACCCT
GCAGAATCCACTTCCCCCATTCTCCCTTCCTGCCCCAGGTTTCTTGTCAAGGTAATGAGT
ACATACATTTTTTTTGTGATAAAACTCTTAAAAGTTAATTTTAATGTATTAATAGTATTC
CTAATGTGTGCTGCAAAATGGCTACAAGCCCGCTTTTCTTAAAATTACATTTTTCTTAAG
GATAGTTGTAGAAAGAAGTACAAATTGGCTTCCATCTTGCAAACCATCTTTTTTTTTTTT
TTTACTTCTTTATCTTCATTTGCTTTGTCACTCGTAAAATGGAAACCGTACTTGAGTTGT
AAACTAGACAATGAGGAAACACTTGAGGCTTCTGCTGTATGTTTATTTCTTGTTGTTATT
GTTGTTACCCAGTAACTTGAATATTGTTTTAATGTGTTGTTAAGACATTGTAGAGTTTAT
CTCAAGCTGTTAAAAATGGTAATGTACAAATGTGAATAGACACTTATCTATAATATGGGT
AAGTTTTGTTTCGCCTATAATAGATGTTTATAAAAACAAGTGAGGGGACAATTGGTCTTT
TTGTTTCCTTTTTATTTCTTCCCCCTTTTTTGCTTGCACAGGTTGCACTATTGAAAAATT
GAGATTGTATAAAACCTGGTCAAAAGCTGCAAGATACCACAGTCTTGTAGATGTCAAATA
AAAATTTATTAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               618-776, - strand, RNAz p=0.727775
               

               
               1523-1632, - strand, RNAz p=0.714693

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               618-776, - strand, RNAz p=0.727775
               

               
               1523-1632, - strand, RNAz p=0.714693

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               111-1632, gnl|bosTau2|chr17 (26360093-26358568)
               

               
               111-1632, gnl|Hg17|chr12 (122305483-122303962)
               

               
               111-1632, gnl|Mm7|chr5 (123620540-123619030)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               111-1632, gnl|bosTau2|chr17 (26360093-26358568)
               

               
               111-1632, gnl|Hg17|chr12 (122305483-122303962)
               

               
               111-1632, gnl|Mm7|chr5 (123620540-123619030)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cte (0.58548)
               

               
               tes (0.207814)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               tes (0.207814)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

	618-776, - strand, RNAz p=0.727775
	1523-1632, - strand, RNAz p=0.714693

	111-1632, gnl\|bosTau2\|chr17 (26360093-26358568)
	111-1632, gnl\|Hg17\|chr12 (122305483-122303962)
	111-1632, gnl\|Mm7\|chr5 (123620540-123619030)

	cte (0.58548)
	tes (0.207814)
	ill (0.175593)
	eye (0.170503)
	ski (0.146735)
	liv (0.146284)
	cbl (0.114797)
	cty (0.10408)