Non-Coding RNA Search

Ss1.1-Pig4-TMW8038C16.3

Sequence:


               
               GAAGTGGCAGGTTCAAGTGTGTTTGCATCACGATGCGAGTCCCTCGGAACCCAACTATTG
GGGATAAATTTGCCAGTCGTCATGGGCAGAAGGGCATCTTGAGCAGGTTGTGGCCGGTGG
AGGACATGCCATTCACAGAGAGCGGGATGGTCCCGGACATTCTGTTCAATCCTCACGGTT
TTCCATCCCGCATGACCATCGGTATGTTGATCGAGAGCATGGCAGGAAAGTCTGCAGCTT
TGCATGGTCTCTGCCATGATGCTACACCCTTCATCTTCTCAGAGGAGAACTCAGCCCTGG
AATACTTTGGTGAGATGCTGAAGGCTGCCGGCTACAACTACTACGGCACGGAGAGATTGT
ACAGTGGCATCAGTGGGCTGGAGCTGGAGGCAGACATCTTCATAGGCGTGGTTTATTACC
AACGCTTACGCCACATGGTCTCGGACAAATTCCAAGTGAGAACAACAGGAGCCAGAGACA
GAGTCACTAACCAGCCTATTGGGGGAAGAAATGTCCAGGGTGGAATCCGTTTTGGAGAGA
TGGAGCGGGATGCTCTCTTAGCACACGGTACATCTTTTCTCCTTCACGACCGCCTCTTCA
ACTGCTCGGATCGGTCGGTGGCCCACGTGTGTGTGAAATGTGGCAGTCTGCTCTCCCCAT
TGTTGGAGAAGCCACCCCCGTCGTGGTCCGCCATGCGCAACAGAAAGTACAGCTGCTCTC
TGTGTAATCGCAGTGACACCATCGACACGGTTTCCGTGCCTTATGTCTTTCGGTATTTTG
TGGCTGAACTGGCAGCTATGAACATCAAAGTGAAACTGGATATCATTTAACTTGATGCTG
GCCTTTGGGTCAGGATCACTGTTGGGTTAAAACAGAATGTAACTTTGTAACTTTAGTTCA
GTGAGGCTATTGATGGGTTACTTGGGAGCTTTTCAAGGTTTTCAGAGCTCTCAGCCAAGA
CCCGGCAACTAAGAATTTGGTTTCTGAGTCTCTCTGTCATAATTACTACTGAAGATCATT
TTCAGTGTATTTGCTCAGAGATTCCATAAGTATCTTTTTTTTAAATGGTACATTGATAAA
AAGGAAATTCAGGGAAAAGTCTTTCCAACCCCATGTTTTTTTATCCTGCTTTTACCAGCA
GTGACTCTCAGACCTTTATTTGTCCATGTGGAGCACAGCAGCCCAATATAAATACAGTAT
AAGTCATATGTGTAACTTTATATTTTCTTATATCCACATTAAAGTAATAACAAGAGGTAG
GACTGTTTTTAACAGCTTTGTTGGAGTGTAATTGTTACACAAAAAAGGCACCTATTTAAT
GAATATAATCTAGTGGCTTGAACAGAAGCATACACCTGTGAAGGACCACCACAATCATGG
TAATAAACACCACCTCCAGAAGTTAAAAAAAAAAAATTTGGGTTGTGTTTCTTTGGCTGG
TTTTTTTGGCAAGAACCATAAGCTTGGGAGTTCTCTTGTGGCGCAGCAGAATCTGATGTG
TCACTGTAGCGGCCTGGGTCACTTATGTGGCACCAGCTCAATCCCAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGTGGCAGGTTCAAGTGTGTTTGCATCACGATGCGAGTCCCTCGGAACCCAACTATTG
GGGATAAATTTGCCAGTCGTCATGGGCAGAAGGGCATCTTGAGCAGGTTGTGGCCGGTGG
AGGACATGCCATTCACAGAGAGCGGGATGGTCCCGGACATTCTGTTCAATCCTCACGGTT
TTCCATCCCGCATGACCATCGGTATGTTGATCGAGAGCATGGCAGGAAAGTCTGCAGCTT
TGCATGGTCTCTGCCATGATGCTACACCCTTCATCTTCTCAGAGGAGAACTCAGCCCTGG
AATACTTTGGTGAGATGCTGAAGGCTGCCGGCTACAACTACTACGGCACGGAGAGATTGT
ACAGTGGCATCAGTGGGCTGGAGCTGGAGGCAGACATCTTCATAGGCGTGGTTTATTACC
AACGCTTACGCCACATGGTCTCGGACAAATTCCAAGTGAGAACAACAGGAGCCAGAGACA
GAGTCACTAACCAGCCTATTGGGGGAAGAAATGTCCAGGGTGGAATCCGTTTTGGAGAGA
TGGAGCGGGATGCTCTCTTAGCACACGGTACATCTTTTCTCCTTCACGACCGCCTCTTCA
ACTGCTCGGATCGGTCGGTGGCCCACGTGTGTGTGAAATGTGGCAGTCTGCTCTCCCCAT
TGTTGGAGAAGCCACCCCCGTCGTGGTCCGCCATGCGCAACAGAAAGTACAGCTGCTCTC
TGTGTAATCGCAGTGACACCATCGACACGGTTTCCGTGCCTTATGTCTTTCGGTATTTTG
TGGCTGAACTGGCAGCTATGAACATCAAAGTGAAACTGGATATCATTTAACTTGATGCTG
GCCTTTGGGTCAGGATCACTGTTGGGTTAAAACAGAATGTAACTTTGTAACTTTAGTTCA
GTGAGGCTATTGATGGGTTACTTGGGAGCTTTTCAAGGTTTTCAGAGCTCTCAGCCAAGA
CCCGGCAACTAAGAATTTGGTTTCTGAGTCTCTCTGTCATAATTACTACTGAAGATCATT
TTCAGTGTATTTGCTCAGAGATTCCATAAGTATCTTTTTTTTAAATGGTACATTGATAAA
AAGGAAATTCAGGGAAAAGTCTTTCCAACCCCATGTTTTTTTATCCTGCTTTTACCAGCA
GTGACTCTCAGACCTTTATTTGTCCATGTGGAGCACAGCAGCCCAATATAAATACAGTAT
AAGTCATATGTGTAACTTTATATTTTCTTATATCCACATTAAAGTAATAACAAGAGGTAG
GACTGTTTTTAACAGCTTTGTTGGAGTGTAATTGTTACACAAAAAAGGCACCTATTTAAT
GAATATAATCTAGTGGCTTGAACAGAAGCATACACCTGTGAAGGACCACCACAATCATGG
TAATAAACACCACCTCCAGAAGTTAAAAAAAAAAAATTTGGGTTGTGTTTCTTTGGCTGG
TTTTTTTGGCAAGAACCATAAGCTTGGGAGTTCTCTTGTGGCGCAGCAGAATCTGATGTG
TCACTGTAGCGGCCTGGGTCACTTATGTGGCACCAGCTCAATCCCAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10438131|dbj|BAB15175.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10438131|dbj|BAB15175.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               684-803, - strand, RNAz p=0.595605

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               684-803, - strand, RNAz p=0.595605

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-1466, gnl|bosTau2|chr11 (36347326-36348740)
               

               
               5-1466, gnl|Hg17|chr2 (113048712-113050190)
               

               
               5-1466, gnl|Mm7|chr2 (128866124-128867569)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-1466, gnl|bosTau2|chr11 (36347326-36348740)
               

               
               5-1466, gnl|Hg17|chr2 (113048712-113050190)
               

               
               5-1466, gnl|Mm7|chr2 (128866124-128867569)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               mgp (0.461361)
               

               
               elu (0.385356)
               

               
               cut (0.339847)
               

               
               cbe (0.239234)
               

               
               jca (0.22792)
               

               
               fli (0.202881)
               

               
               spl (0.143184)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.461361)
               

               
               elu (0.385356)
               

               
               cut (0.339847)
               

               
               cbe (0.239234)
               

               
               jca (0.22792)
               

               
               fli (0.202881)
               

               
               spl (0.143184)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

	5-1466, gnl\|bosTau2\|chr11 (36347326-36348740)
	5-1466, gnl\|Hg17\|chr2 (113048712-113050190)
	5-1466, gnl\|Mm7\|chr2 (128866124-128867569)

	mgp (0.461361)
	elu (0.385356)
	cut (0.339847)
	cbe (0.239234)
	jca (0.22792)
	fli (0.202881)
	spl (0.143184)
	sug (0.127291)
	thg (0.126791)
	ese (0.126502)
	cly (0.120642)
	eru (0.120048)
	spc (0.113366)
	nbm (0.0993246)