Non-Coding RNA Search

Ss1.1-Pig4-TMW8038D07.3

Sequence:


               
               CGAAAGCGCCCCTGGCATGACGGGCCAGGAACCTCTGAGCATAGAGAAATGGAAGCCCCA
GGGGGTCCTTCTGAGGACCGAGGAGGCAAAGGCCGAGGGGGCCCAGGACCTTCTCAGAGA
GTGCCAAAGTCTGGGCGTTCCAGCTCCTTGGATGGAGATCACCATGATGGATACCACAGA
GATGAACCTTTTGGGGGTCCTCCAGGCAGTGGTACCCCTTCTAGAGGGGGCCGGAGTGGC
AGTAACTGGGGTAGAGGGAGTAACATGAACTCTGGCCCGCCAAGGCGAGGCGCTTCAAGG
GGGGGCGGAAGGGGTCGGTAGAGGTGGGGGTCAATACCCCTAGGCCTCTCTGGACAGTAT
TTAAGAACTTCTTGTGGACTTACCAAGAGAAACAAAAGGAAACCTGCACCATGTAGCCCT
GAACTCTGTGGGGCAGCTGAATCCCAGGAGCCCCTATCGAGGTCTTCAAGGTGAAGAGAC
TGCTGCTGGCTCTGAGTGGCCGGCCTTGCTTCGTCTGTCCACCCTCACTGCCCTGACTCC
CACATGGGTTTGTGAACATAAAAGCTGGAATCTTTTTTTTTTTTTAAAGTGTCACGAGAC
ATGGAGCACCTCCACAAATTTAAGTTCATGTCCCATTTGGAAATTTGTTTCTATATGTAC
AGTTTGTCAGAGAAAAAACATTAAGTTGTTTTTGTATGAATACAGAATGTGATTTACGCA
AGAATTAACAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAAAGCGCCCCTGGCATGACGGGCCAGGAACCTCTGAGCATAGAGAAATGGAAGCCCCA
GGGGGTCCTTCTGAGGACCGAGGAGGCAAAGGCCGAGGGGGCCCAGGACCTTCTCAGAGA
GTGCCAAAGTCTGGGCGTTCCAGCTCCTTGGATGGAGATCACCATGATGGATACCACAGA
GATGAACCTTTTGGGGGTCCTCCAGGCAGTGGTACCCCTTCTAGAGGGGGCCGGAGTGGC
AGTAACTGGGGTAGAGGGAGTAACATGAACTCTGGCCCGCCAAGGCGAGGCGCTTCAAGG
GGGGGCGGAAGGGGTCGGTAGAGGTGGGGGTCAATACCCCTAGGCCTCTCTGGACAGTAT
TTAAGAACTTCTTGTGGACTTACCAAGAGAAACAAAAGGAAACCTGCACCATGTAGCCCT
GAACTCTGTGGGGCAGCTGAATCCCAGGAGCCCCTATCGAGGTCTTCAAGGTGAAGAGAC
TGCTGCTGGCTCTGAGTGGCCGGCCTTGCTTCGTCTGTCCACCCTCACTGCCCTGACTCC
CACATGGGTTTGTGAACATAAAAGCTGGAATCTTTTTTTTTTTTTAAAGTGTCACGAGAC
ATGGAGCACCTCCACAAATTTAAGTTCATGTCCCATTTGGAAATTTGTTTCTATATGTAC
AGTTTGTCAGAGAAAAAACATTAAGTTGTTTTTGTATGAATACAGAATGTGATTTACGCA
AGAATTAACAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q69YF7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q69YF7_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               614-732, gnl|bosTau2|chr15 (41942645-41942528)
               

               
               614-732, gnl|Hg17|chr2 (128179826-128179721)
               

               
               614-732, gnl|Mm7|chr18 (32299369-32299480)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               614-732, gnl|bosTau2|chr15 (41942645-41942528)
               

               
               614-732, gnl|Hg17|chr2 (128179826-128179721)
               

               
               614-732, gnl|Mm7|chr18 (32299369-32299480)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               mgm (0.180343)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgm (0.180343)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)

	614-732, gnl\|bosTau2\|chr15 (41942645-41942528)
	614-732, gnl\|Hg17\|chr2 (128179826-128179721)
	614-732, gnl\|Mm7\|chr18 (32299369-32299480)

	mgm (0.180343)
	ton (0.1755)
	mcp (0.170648)
	cut (0.169924)
	hyp (0.142837)
	csk (0.140746)
	hlv (0.139256)