Non-Coding RNA Search

Ss1.1-Pig4-TMW8038D09.3

Sequence:


               
               GGACACTTCCCACTCCCACTCCCCTTCCTTTGTCCTGATCCTGGAATTAGGTACAAGGGT
TCATAGGTTCTATTTCTTCCGGAGAGCCCCTGCAGAGAACCCTGTTTCCCTGTTTGAATG
CTCCTGCGCTGTTGTGTTTTAGTGAAACATGTCTTCACTTAAAACCAACTTCGAGCGGGG
CACTGTTTCTTTCCCCCCGTTTTGAAAGTTGAAAAATTCTTACAGTACAAACAGGGCTGT
GGGGGGTGAGGGTGTTGGTGCTGTGAGAGGTCACTCTGAGTGCATTTTGGCACTGGGATG
GGATGGCTGGGGTGGGAGGACCCCGCTCCCCCCCCTTTTTTCTAATATTTAAGGAGTGTT
TTTGTAGGTTTCAACAACAACCACAACTTGAATTTGTAACATGGGAGGTGGGAGGGAATG
GCTTAGAGGTGTCCGCCTAAGCTTAAGGCCAACTGTGGAAGTTTTGTTTTCCCTTTTTTT
GTACAATAAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACACTTCCCACTCCCACTCCCCTTCCTTTGTCCTGATCCTGGAATTAGGTACAAGGGT
TCATAGGTTCTATTTCTTCCGGAGAGCCCCTGCAGAGAACCCTGTTTCCCTGTTTGAATG
CTCCTGCGCTGTTGTGTTTTAGTGAAACATGTCTTCACTTAAAACCAACTTCGAGCGGGG
CACTGTTTCTTTCCCCCCGTTTTGAAAGTTGAAAAATTCTTACAGTACAAACAGGGCTGT
GGGGGGTGAGGGTGTTGGTGCTGTGAGAGGTCACTCTGAGTGCATTTTGGCACTGGGATG
GGATGGCTGGGGTGGGAGGACCCCGCTCCCCCCCCTTTTTTCTAATATTTAAGGAGTGTT
TTTGTAGGTTTCAACAACAACCACAACTTGAATTTGTAACATGGGAGGTGGGAGGGAATG
GCTTAGAGGTGTCCGCCTAAGCTTAAGGCCAACTGTGGAAGTTTTGTTTTCCCTTTTTTT
GTACAATAAAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|18027394|gb|AAL55779.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|18027394|gb|AAL55779.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               74-380, + strand, RNAz p=0.990438

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               74-380, + strand, RNAz p=0.990438

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC042297, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC042297, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-492, gnl|bosTau2|chr19 (38090906-38091406)
               

               
               1-492, gnl|Hg17|chr17 (39638435-39637944)
               

               
               1-492, gnl|Mm7|chr11 (102414104-102413616)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-492, gnl|bosTau2|chr19 (38090906-38091406)
               

               
               1-492, gnl|Hg17|chr17 (39638435-39637944)
               

               
               1-492, gnl|Mm7|chr11 (102414104-102413616)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fbs (0.175346)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)

	1-492, gnl\|bosTau2\|chr19 (38090906-38091406)
	1-492, gnl\|Hg17\|chr17 (39638435-39637944)
	1-492, gnl\|Mm7\|chr11 (102414104-102413616)