Non-Coding RNA Search

Ss1.1-Pig4-TMW8038D14.3

Sequence:


               
               TTCCCTAACCTGACGGCCTCCGTGCTTCCCAGCCTTCTCGAGCGGTCTTGCGCCAGGCCT
AGAAGCTCCTCAGCCCACCGCGCGAACTTGACCCCTGTGTTGTTGGATGGTGATTGTCTC
AATATCGCGGTCTGCAGAGGTTGTATACATCCATCCCTGTCCAAAGATCAGACTCCATGA
ACCCACTGAGTTTGTGCCTTGTAGCAACATACGGGGAAAGTGGGAACGAAAAAGCACTCA
GCTAGCTAGTATTGTCTGAGAATCTAGGCAGTTCTTCAGACAATCGCCATGGGTATCCGA
GGACTAATGAGTTTTGTGGAAGATCATAGCAATGAATTCTTCACTGACTTGAAGTTACGA
GACACAAAAATAATCATTGACGGCTATGCTCTCTTCCACCGGCTTTGCTTCAATTCTAAC
TTGGAGCTCCGGTATGGAGGGGACTATGATTCCTTTGCAGATGTTGTACAAAAATTTTTT
GAAGCACTCTTTGTTTGTAAAATCTGCCCATATGTTGTATTAGATGGAGGATGTGACATC
TCCGATAAAAAGCTTAAAACTTTAAAGGACCGAGCCAGGGAGAAGATCCAGATGGCCCAT
TCCCTTTCTGTTGGTGGGGGTGGGTGTGTGTGTCCTTTGCTCATCCGAGAAGTCTTCATA
CAGGTTCTGATCAAGTTACAGGTATGTTTTGTCCAGTGCTTTTCAGAAGCAGATCGAGAC
ATTATGACACTTGCCAATCATTGGAATTGCCCAGTGCTATCTTCCGATAGTGACTTTTGC
ATTTTTGACCTGAAAAGCGGGTTTTGCCCATTGAACAGCTTTCAGTGGAGAAACGTAAAC
ACTGTCAAGGGTACACGAGACCACTACATCCCTGCCAAGTGCTTCTCCCTTGACGCGCTC
TGCCGTCACTTTGGCCACATGAACAAAGCTCTCTTGCCTCTTTTTGCAGTGCTGTGTGGA
AATGACCACATTAATCTGCCCATCGTGGAGACATTCTTAAGTCAAGTCCGTCCTCCTCTT
GGGGCTCCCAGTTCCAAGGGGAGGAGACACCACAGGGTGCTGGGACTTCTCAATTGGTTG
TCTTGTTTTGCTGACCCAACGGAAGCACTCGATAATGTTCTAAAACATCTCCCCAAAAAG
AGCCGAGCAAGTGTGGAGGAGCTTCTCTGCTGCTCCATGGAGGAGTACCTGCAGTCCCAG
GTGAGGCTGCAGGACTTCTTCCAACGGGGGACTTACTCCTGCCCAGACACCCTGAATCGG
GGTTTTCCACCGTGGGTCCTTGTGGCCTTGGCCAGAGGCCAACTGTCCCCTTTCGTCAGC
GATGCTCTGGTGCTGAGACGGACTATTCTGCACACACAGGTGGAAAACATGCAACGAATA
AATGCCCACAGAGTCTCTCTGCCCATCCGGCAAGTCATCTATGGGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCCTAACCTGACGGCCTCCGTGCTTCCCAGCCTTCTCGAGCGGTCTTGCGCCAGGCCT
AGAAGCTCCTCAGCCCACCGCGCGAACTTGACCCCTGTGTTGTTGGATGGTGATTGTCTC
AATATCGCGGTCTGCAGAGGTTGTATACATCCATCCCTGTCCAAAGATCAGACTCCATGA
ACCCACTGAGTTTGTGCCTTGTAGCAACATACGGGGAAAGTGGGAACGAAAAAGCACTCA
GCTAGCTAGTATTGTCTGAGAATCTAGGCAGTTCTTCAGACAATCGCCATGGGTATCCGA
GGACTAATGAGTTTTGTGGAAGATCATAGCAATGAATTCTTCACTGACTTGAAGTTACGA
GACACAAAAATAATCATTGACGGCTATGCTCTCTTCCACCGGCTTTGCTTCAATTCTAAC
TTGGAGCTCCGGTATGGAGGGGACTATGATTCCTTTGCAGATGTTGTACAAAAATTTTTT
GAAGCACTCTTTGTTTGTAAAATCTGCCCATATGTTGTATTAGATGGAGGATGTGACATC
TCCGATAAAAAGCTTAAAACTTTAAAGGACCGAGCCAGGGAGAAGATCCAGATGGCCCAT
TCCCTTTCTGTTGGTGGGGGTGGGTGTGTGTGTCCTTTGCTCATCCGAGAAGTCTTCATA
CAGGTTCTGATCAAGTTACAGGTATGTTTTGTCCAGTGCTTTTCAGAAGCAGATCGAGAC
ATTATGACACTTGCCAATCATTGGAATTGCCCAGTGCTATCTTCCGATAGTGACTTTTGC
ATTTTTGACCTGAAAAGCGGGTTTTGCCCATTGAACAGCTTTCAGTGGAGAAACGTAAAC
ACTGTCAAGGGTACACGAGACCACTACATCCCTGCCAAGTGCTTCTCCCTTGACGCGCTC
TGCCGTCACTTTGGCCACATGAACAAAGCTCTCTTGCCTCTTTTTGCAGTGCTGTGTGGA
AATGACCACATTAATCTGCCCATCGTGGAGACATTCTTAAGTCAAGTCCGTCCTCCTCTT
GGGGCTCCCAGTTCCAAGGGGAGGAGACACCACAGGGTGCTGGGACTTCTCAATTGGTTG
TCTTGTTTTGCTGACCCAACGGAAGCACTCGATAATGTTCTAAAACATCTCCCCAAAAAG
AGCCGAGCAAGTGTGGAGGAGCTTCTCTGCTGCTCCATGGAGGAGTACCTGCAGTCCCAG
GTGAGGCTGCAGGACTTCTTCCAACGGGGGACTTACTCCTGCCCAGACACCCTGAATCGG
GGTTTTCCACCGTGGGTCCTTGTGGCCTTGGCCAGAGGCCAACTGTCCCCTTTCGTCAGC
GATGCTCTGGTGCTGAGACGGACTATTCTGCACACACAGGTGGAAAACATGCAACGAATA
AATGCCCACAGAGTCTCTCTGCCCATCCGGCAAGTCATCTATGGGCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61858682|ref|XP_587713.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61858682|ref|XP_587713.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               742-861, - strand, RNAz p=0.821316
               

               
               942-1061, + strand, RNAz p=0.628419

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               742-861, - strand, RNAz p=0.821316
               

               
               942-1061, + strand, RNAz p=0.628419

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC069265, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC069265, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               266-1428, gnl|bosTau2|chr1 (97188089-97186930)
               

               
               266-1428, gnl|Hg17|chr3 (132226875-132225712)
               

               
               266-1428, gnl|Mm7|chr9 (105114035-105115185)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               266-1428, gnl|bosTau2|chr1 (97188089-97186930)
               

               
               266-1428, gnl|Hg17|chr3 (132226875-132225712)
               

               
               266-1428, gnl|Mm7|chr9 (105114035-105115185)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eli (0.151814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eli (0.151814)

	742-861, - strand, RNAz p=0.821316
	942-1061, + strand, RNAz p=0.628419

	266-1428, gnl\|bosTau2\|chr1 (97188089-97186930)
	266-1428, gnl\|Hg17\|chr3 (132226875-132225712)
	266-1428, gnl\|Mm7\|chr9 (105114035-105115185)