Ss1.1-Pig4-TMW8038D21.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGTCTGGTTTGATGCCACTATTGGCTACTTGTCCATCACAGCCAACTACACAGACCAAT GGGAGAGATGGTGGAAGAACCCAGAGCAAGTGAGCCTGTATCAGTTCATGGCCAAAGACA ATGTTCCCTTCCATGGCTTAGTCTTTCCTTGTTCAGCCCTAGGAACTGAGGACAACTATA CTTTGGTCAGCCACCTCATTGCTACAGAGTACCTGAATTATGAGGATGGGAAGTTCTCTA AGAGCCGCGGCGTGGGAGTATTTGGGGACATGGCCCAGAACACAGGGATTCCTGCTGACA TCTGGCGCTTCTATCTGCTATACATTCGGCCTGAGGGCCAGGACACTGCCTTCTCCTGGA CAGACATGTTGCTCAAGAATAATTCTGAGCTACTTAACAACCTGGGCAACTTCATCAACA GAGCTGGGATGTTTGTGTCTAAGTTTTTTGGGTGTTTTGTGCCCGAGATGGTGCTTACCT CTGATGATCGGCGCCTGCTGGCCCATGTCACCCTGGAGCTCCAGCACTATCACCAGCTGC TAGAGAAGGCTCGGATCCGGGATGCCTTACGCAGTATCCTCACCATCTCTCGCCATGGCA ACCAGTACATCCAGGTGAACGAGCCCTGGAAGCGGATTAAAGGCAGCGAGGCTGACAGGC AGCGGGCAGGGACAGTGACAGGCTTGGCAGTGAACATAGCTGCCTTGCTGTCTGTCATGC TCCAGCCTTACATGCCCACGGTTAGCGCCACCATCCAGGCCCAGCTGCAGTTGTCGCCTC CAGCCTGCAGCATCTTGCCCACAAACTTCCTTTGCACCTTACCAGCAGGACACCAGATTG GCACAGTCAGTCCTTTGTTCCAAAAATTGGAAAATGACCAGATTGAAAGTCTGAGGCAGC GCTTTGGCGGGGGCCAGGCAAAAGTATCCCCCAAGCCAGCAGTTGTAGAGACTGTGACAA CAGCTGGACCACAGCAGGTACAAGTGTTGATGGATGAAGTGACGAAGCAGGGCAACATTG TCCGAGAATTGAAAGCACAAAAGGCAGACAAGAACCAGGTTGCTGCGGAGGTGGCTAAAC TTTTGGATCTGAAGAAACAGTTGGCTCTAGCTGAGGGGAAACCCTTTGAGACCCCTAAAG GCAAGAAGAAAAGGTGAAAGTGAAAACTTGGCTCAAAGAAAGTCACTTTAATGGATTTGG GCAGTAATAAATAAACATACAATCTCTCTATAGAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGTCTGGTTTGATGCCACTATTGGCTACTTGTCCATCACAGCCAACTACACAGACCAAT GGGAGAGATGGTGGAAGAACCCAGAGCAAGTGAGCCTGTATCAGTTCATGGCCAAAGACA ATGTTCCCTTCCATGGCTTAGTCTTTCCTTGTTCAGCCCTAGGAACTGAGGACAACTATA CTTTGGTCAGCCACCTCATTGCTACAGAGTACCTGAATTATGAGGATGGGAAGTTCTCTA AGAGCCGCGGCGTGGGAGTATTTGGGGACATGGCCCAGAACACAGGGATTCCTGCTGACA TCTGGCGCTTCTATCTGCTATACATTCGGCCTGAGGGCCAGGACACTGCCTTCTCCTGGA CAGACATGTTGCTCAAGAATAATTCTGAGCTACTTAACAACCTGGGCAACTTCATCAACA GAGCTGGGATGTTTGTGTCTAAGTTTTTTGGGTGTTTTGTGCCCGAGATGGTGCTTACCT CTGATGATCGGCGCCTGCTGGCCCATGTCACCCTGGAGCTCCAGCACTATCACCAGCTGC TAGAGAAGGCTCGGATCCGGGATGCCTTACGCAGTATCCTCACCATCTCTCGCCATGGCA ACCAGTACATCCAGGTGAACGAGCCCTGGAAGCGGATTAAAGGCAGCGAGGCTGACAGGC AGCGGGCAGGGACAGTGACAGGCTTGGCAGTGAACATAGCTGCCTTGCTGTCTGTCATGC TCCAGCCTTACATGCCCACGGTTAGCGCCACCATCCAGGCCCAGCTGCAGTTGTCGCCTC CAGCCTGCAGCATCTTGCCCACAAACTTCCTTTGCACCTTACCAGCAGGACACCAGATTG GCACAGTCAGTCCTTTGTTCCAAAAATTGGAAAATGACCAGATTGAAAGTCTGAGGCAGC GCTTTGGCGGGGGCCAGGCAAAAGTATCCCCCAAGCCAGCAGTTGTAGAGACTGTGACAA CAGCTGGACCACAGCAGGTACAAGTGTTGATGGATGAAGTGACGAAGCAGGGCAACATTG TCCGAGAATTGAAAGCACAAAAGGCAGACAAGAACCAGGTTGCTGCGGAGGTGGCTAAAC TTTTGGATCTGAAGAAACAGTTGGCTCTAGCTGAGGGGAAACCCTTTGAGACCCCTAAAG GCAAGAAGAAAAGGTGAAAGTGAAAACTTGGCTCAAAGAAAGTCACTTTAATGGATTTGG GCAGTAATAAATAAACATACAATCTCTCTATAGAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 656-1166, - strand, RNAz p=0.902741 | |
| 735-1226, - strand, RNAz p=0.600534 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 656-1166, - strand, RNAz p=0.902741 | |
| 735-1226, - strand, RNAz p=0.600534 |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 205-430, gnl|bosTau2|chr5 (34780139-34779915) | |
| 205-430, gnl|canFam2|chr10 (4586741-4586897) | |
| 205-430, gnl|danRer3|chrUn (40121733-40121869) | |
| 205-430, gnl|dasNov1|scaffold_40713 (41215-41055) | |
| 205-430, gnl|echTel1|scaffold_307962 (4379-4535) | |
| 205-430, gnl|fr1|chrUn (269344011-269343868) | |
| 205-430, gnl|hg17|chr12 (56192774-56192934) | |
| 205-430, gnl|Hg17|chr12 (56192798-56193021) | |
| 205-430, gnl|loxAfr1|scaffold_6997 (54104-53946) | |
| 205-430, gnl|mm7|chr10 (126800876-126800726) | |
| 205-430, gnl|Mm7|chr10 (126800860-126800637) | |
| 205-430, gnl|oryCun1|scaffold_204842 (93827-93984) | |
| 205-430, gnl|panTro1|chr10 (57440580-57440740) | |
| 205-430, gnl|rheMac2|chr11 (54589881-54590037) | |
| 205-430, gnl|rn3|chr7 (67276487-67276340) | |
| 205-430, gnl|tetNig1|chr11 (2662817-2662670) | |
| 205-430, gnl|xenTro1|scaffold_34 (3311718-3311545) | |
| 656-852, gnl|bosTau2|chr5 (34778784-34778588) | |
| 656-852, gnl|canFam2|chr10 (4588238-4588434) | |
| 656-852, gnl|danRer3|chrUn (40130314-40130516) | |
| 656-852, gnl|dasNov1|scaffold_5444 (60956-60760) | |
| 656-852, gnl|echTel1|scaffold_307962 (5944-6140) | |
| 656-852, gnl|fr1|chrUn (269342156-269341951) | |
| 656-852, gnl|hg17|chr12 (56195197-56195393) | |
| 656-852, gnl|Hg17|chr12 (56195197-56195390) | |
| 656-852, gnl|loxAfr1|scaffold_6997 (52547-52351) | |
| 656-852, gnl|mm7|chr10 (126799053-126798857) | |
| 656-852, gnl|Mm7|chr10 (126799051-126798855) | |
| 656-852, gnl|oryCun1|scaffold_213174 (170289-170485) | |
| 656-852, gnl|panTro1|chr10 (57443007-57443203) | |
| 656-852, gnl|rheMac2|chr11 (54591968-54592164) | |
| 656-852, gnl|rn3|chr7 (67274673-67274477) | |
| 656-852, gnl|tetNig1|chr11 (2660953-2660748) | |
| 656-852, gnl|xenTro1|scaffold_34 (3308706-3308513) | |
| 1008-1230, gnl|bosTau2|chr5 (34777275-34777055) | |
| 1008-1230, gnl|canFam2|chr10 (4589515-4589691) | |
| 1008-1230, gnl|danRer3|chrUn (40142993-40143149) | |
| 1008-1230, gnl|dasNov1|scaffold_5444 (59693-59519) | |
| 1008-1230, gnl|echTel1|scaffold_307962 (7253-7423) | |
| 1008-1230, gnl|fr1|chrUn (269340413-269340252) | |
| 1008-1230, gnl|hg17|chr12 (56196470-56196642) | |
| 1008-1230, gnl|Hg17|chr12 (56196482-56196702) | |
| 1008-1230, gnl|mm7|chr10 (126797855-126797684) | |
| 1008-1230, gnl|Mm7|chr10 (126797839-126797625) | |
| 1008-1230, gnl|oryCun1|scaffold_213174 (171575-171748) | |
| 1008-1230, gnl|panTro1|chr10 (57444279-57444451) | |
| 1008-1230, gnl|rheMac2|chr11 (54593239-54593411) | |
| 1008-1230, gnl|rn3|chr7 (67273469-67273298) | |
| 1008-1230, gnl|tetNig1|chr11 (2659404-2659245) | |
| 1008-1230, gnl|xenTro1|scaffold_34 (3300067-3299901) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 205-430, gnl|bosTau2|chr5 (34780139-34779915) | |
| 205-430, gnl|canFam2|chr10 (4586741-4586897) | |
| 205-430, gnl|danRer3|chrUn (40121733-40121869) | |
| 205-430, gnl|dasNov1|scaffold_40713 (41215-41055) | |
| 205-430, gnl|echTel1|scaffold_307962 (4379-4535) | |
| 205-430, gnl|fr1|chrUn (269344011-269343868) | |
| 205-430, gnl|hg17|chr12 (56192774-56192934) | |
| 205-430, gnl|Hg17|chr12 (56192798-56193021) | |
| 205-430, gnl|loxAfr1|scaffold_6997 (54104-53946) | |
| 205-430, gnl|mm7|chr10 (126800876-126800726) | |
| 205-430, gnl|Mm7|chr10 (126800860-126800637) | |
| 205-430, gnl|oryCun1|scaffold_204842 (93827-93984) | |
| 205-430, gnl|panTro1|chr10 (57440580-57440740) | |
| 205-430, gnl|rheMac2|chr11 (54589881-54590037) | |
| 205-430, gnl|rn3|chr7 (67276487-67276340) | |
| 205-430, gnl|tetNig1|chr11 (2662817-2662670) | |
| 205-430, gnl|xenTro1|scaffold_34 (3311718-3311545) | |
| 656-852, gnl|bosTau2|chr5 (34778784-34778588) | |
| 656-852, gnl|canFam2|chr10 (4588238-4588434) | |
| 656-852, gnl|danRer3|chrUn (40130314-40130516) | |
| 656-852, gnl|dasNov1|scaffold_5444 (60956-60760) | |
| 656-852, gnl|echTel1|scaffold_307962 (5944-6140) | |
| 656-852, gnl|fr1|chrUn (269342156-269341951) | |
| 656-852, gnl|hg17|chr12 (56195197-56195393) | |
| 656-852, gnl|Hg17|chr12 (56195197-56195390) | |
| 656-852, gnl|loxAfr1|scaffold_6997 (52547-52351) | |
| 656-852, gnl|mm7|chr10 (126799053-126798857) | |
| 656-852, gnl|Mm7|chr10 (126799051-126798855) | |
| 656-852, gnl|oryCun1|scaffold_213174 (170289-170485) | |
| 656-852, gnl|panTro1|chr10 (57443007-57443203) | |
| 656-852, gnl|rheMac2|chr11 (54591968-54592164) | |
| 656-852, gnl|rn3|chr7 (67274673-67274477) | |
| 656-852, gnl|tetNig1|chr11 (2660953-2660748) | |
| 656-852, gnl|xenTro1|scaffold_34 (3308706-3308513) | |
| 1008-1230, gnl|bosTau2|chr5 (34777275-34777055) | |
| 1008-1230, gnl|canFam2|chr10 (4589515-4589691) | |
| 1008-1230, gnl|danRer3|chrUn (40142993-40143149) | |
| 1008-1230, gnl|dasNov1|scaffold_5444 (59693-59519) | |
| 1008-1230, gnl|echTel1|scaffold_307962 (7253-7423) | |
| 1008-1230, gnl|fr1|chrUn (269340413-269340252) | |
| 1008-1230, gnl|hg17|chr12 (56196470-56196642) | |
| 1008-1230, gnl|Hg17|chr12 (56196482-56196702) | |
| 1008-1230, gnl|mm7|chr10 (126797855-126797684) | |
| 1008-1230, gnl|Mm7|chr10 (126797839-126797625) | |
| 1008-1230, gnl|oryCun1|scaffold_213174 (171575-171748) | |
| 1008-1230, gnl|panTro1|chr10 (57444279-57444451) | |
| 1008-1230, gnl|rheMac2|chr11 (54593239-54593411) | |
| 1008-1230, gnl|rn3|chr7 (67273469-67273298) | |
| 1008-1230, gnl|tetNig1|chr11 (2659404-2659245) | |
| 1008-1230, gnl|xenTro1|scaffold_34 (3300067-3299901) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| ssp (0.271039) | |
| mcp (0.170648) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| nca (0.136874) | |
| cov (0.132153) | |
| ese (0.126502) | |
| clu (0.119646) | |
| ecc (0.115035) | |
| spc (0.113366) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ssp (0.271039) | |
| mcp (0.170648) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| nca (0.136874) | |
| cov (0.132153) | |
| ese (0.126502) | |
| clu (0.119646) | |
| ecc (0.115035) | |
| spc (0.113366) |