Non-Coding RNA Search

Ss1.1-Pig4-TMW8038E06.5.5

Sequence:


               
               TCAGTCAAAGCAGGGATCCTGAAAGCTGCAAATGGCACAAAGACCTTTTACAAGTGACCT
GGCTTGATCACTGCACACGCTATCCCTGGCACCTGAGGCAGAAGATACATCTTGTGCTTC
CCTAGTCATCAGGTTCATCACTTCGAAGCATAGAAGCTGTAGACTGACCCCATCAACAAG
AGGGTCCTTTAAGACAATGCTGATCACTCTTGCCGTGGAGTATTAGCTTTGCTGGTGGGA
ACAGTAGCTTCATAGAGTCACCAAATACTGTATGTGGGATAAAACTGAACCTTGAACTGC
CTCCTAAAATGACTTTATATTTTAGGACATGGGAAGAACAGAAGACAGAGCATGCTCTTT
TAAGTCTGATAACATGGTTTCAAGCCCAGCCCCCAGCCTTTCTTATCAATCAAGGACTCA
GATCTGAAGGCAGTTATTTCTTTTGGTGGACTTGGAATCTTCGTTTGTCTACACTGTCCT
CTTCACAGTGGAGTCTTTTTATTTCAGACCTACAGATGGTTTTTATATTTGTTGTCACAG
TGTGACAATTTTTTTGTACAGTTGGTTTTAAGGTCTTCTCTGCCATTAGAGCCAGTAGGT
TACAGCTATTGATGTAACTGTAGCTGCAATTTTTGTGCAGGACTGAGAAACACAGTGCAT
TATTTATTGCGGAATCATTGCTGCTAAATAACTACTGTCTGTTTATTTAACACAACAGTT
GAATGCCTGAAGAAGTTGCAGTGGCTTTATTATATGTGAATGCATCTGTTTCTCCTCACA
AATTGTTTTACTGCTGCATTTTTTGTTTGTTTGTTTTAAAAATTAAACTGCAGTGTTTCC
TGGAATGTAAATTTAGCTTTGCTTAACAGTAAAATAAGTGAGCCATCTTGAACACTCTTA
CGTCATGCTATATAATTTTTTTCTGAACATTGGCAAATAGAGTAGCTAAGAAATTGATAA
GCACATTATGTTTAGGAAAGCATGTGATGCAGAAGTTGATTCAAGCAAGTGAATATCTGA
CATTTTGGGAATCTCACATTAGATACCAGTGAATTAAATCACCAAAAGTATTTATTTTTA
ACTTTCCTCATTTTAGAAATATTTACTGCATATTATTGGGTATTTGTATACTAATACACT
TAGTGATACATTGTGCTTTAATTTAGTTAAAACTAAACCGTACAAGTCCAGTCGAACATG
AGAGGTCTTGTTTTTGTTTATTTGTTTTAAATACAGTTCTTTTATTAGAAAGGATGATAC
TTCATTGGGAAACAAGTTATTTCATTTGGGAGCTGTGTGTATGTGTGTGTTTTAATAATA
TTCACTTGGAATCAGCTGAAAGCTGTAATATGCCTTTGAAATGAGCCATGATAAATGCAA
ATGAGAGCAATGAGGACTTAGAGGATTTTTTTTTGAAAGCGTTATGGGTATTATCTGTTT
ACCAGAGAGAGTAAATATTACAGTTTTAATTATGAATCTTAGAACATCATAAACACACCT
TGGTGTTGTAACAGTGTTTTAATTAAACATTTGTGTTCACTTTTAAGGACTGTTTGTTTA
GTGCATCTTACAAACTACAAATCTTAATTGGTATATTTTGAAATGGTCATGTAAATTTTT
GGCTTATATATCATGAAAATAAGTCATAACTTAATTCTTTTCCTGACATTCACTGTAAAA
CATTCAGGGGTCCTACCATTTCTGTTCAGGAAATCTTGTAGTTTATTGTTATTTAACAGT
ATTAAGTGAAATTTTGTATATTTCATTTTAACTTTATTTGTGAATAGTGATTGTGGCATG
TTTGGGGTGTTATTTTAATATTTCACGATATTGAAATTTTAATTTTTTTAAAAATTTTTT
TCTGGAAGAAACAGATTCATGTGTAATGGTGAATATTGGACCACTACTGCTTTTCCAATT
TGTAAATTGGTTTTATGTTAAACTCTGTAGCCTAACATACTGCTGTTAATTTCTAACTGA
CGGACATGTATTAATATTGTACTTTGAAGGTTATAAATATTATGTGGAAATTCCTCAATT
TTGTTTTGAAATTTATAATAACAAAATCTTCATGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGTCAAAGCAGGGATCCTGAAAGCTGCAAATGGCACAAAGACCTTTTACAAGTGACCT
GGCTTGATCACTGCACACGCTATCCCTGGCACCTGAGGCAGAAGATACATCTTGTGCTTC
CCTAGTCATCAGGTTCATCACTTCGAAGCATAGAAGCTGTAGACTGACCCCATCAACAAG
AGGGTCCTTTAAGACAATGCTGATCACTCTTGCCGTGGAGTATTAGCTTTGCTGGTGGGA
ACAGTAGCTTCATAGAGTCACCAAATACTGTATGTGGGATAAAACTGAACCTTGAACTGC
CTCCTAAAATGACTTTATATTTTAGGACATGGGAAGAACAGAAGACAGAGCATGCTCTTT
TAAGTCTGATAACATGGTTTCAAGCCCAGCCCCCAGCCTTTCTTATCAATCAAGGACTCA
GATCTGAAGGCAGTTATTTCTTTTGGTGGACTTGGAATCTTCGTTTGTCTACACTGTCCT
CTTCACAGTGGAGTCTTTTTATTTCAGACCTACAGATGGTTTTTATATTTGTTGTCACAG
TGTGACAATTTTTTTGTACAGTTGGTTTTAAGGTCTTCTCTGCCATTAGAGCCAGTAGGT
TACAGCTATTGATGTAACTGTAGCTGCAATTTTTGTGCAGGACTGAGAAACACAGTGCAT
TATTTATTGCGGAATCATTGCTGCTAAATAACTACTGTCTGTTTATTTAACACAACAGTT
GAATGCCTGAAGAAGTTGCAGTGGCTTTATTATATGTGAATGCATCTGTTTCTCCTCACA
AATTGTTTTACTGCTGCATTTTTTGTTTGTTTGTTTTAAAAATTAAACTGCAGTGTTTCC
TGGAATGTAAATTTAGCTTTGCTTAACAGTAAAATAAGTGAGCCATCTTGAACACTCTTA
CGTCATGCTATATAATTTTTTTCTGAACATTGGCAAATAGAGTAGCTAAGAAATTGATAA
GCACATTATGTTTAGGAAAGCATGTGATGCAGAAGTTGATTCAAGCAAGTGAATATCTGA
CATTTTGGGAATCTCACATTAGATACCAGTGAATTAAATCACCAAAAGTATTTATTTTTA
ACTTTCCTCATTTTAGAAATATTTACTGCATATTATTGGGTATTTGTATACTAATACACT
TAGTGATACATTGTGCTTTAATTTAGTTAAAACTAAACCGTACAAGTCCAGTCGAACATG
AGAGGTCTTGTTTTTGTTTATTTGTTTTAAATACAGTTCTTTTATTAGAAAGGATGATAC
TTCATTGGGAAACAAGTTATTTCATTTGGGAGCTGTGTGTATGTGTGTGTTTTAATAATA
TTCACTTGGAATCAGCTGAAAGCTGTAATATGCCTTTGAAATGAGCCATGATAAATGCAA
ATGAGAGCAATGAGGACTTAGAGGATTTTTTTTTGAAAGCGTTATGGGTATTATCTGTTT
ACCAGAGAGAGTAAATATTACAGTTTTAATTATGAATCTTAGAACATCATAAACACACCT
TGGTGTTGTAACAGTGTTTTAATTAAACATTTGTGTTCACTTTTAAGGACTGTTTGTTTA
GTGCATCTTACAAACTACAAATCTTAATTGGTATATTTTGAAATGGTCATGTAAATTTTT
GGCTTATATATCATGAAAATAAGTCATAACTTAATTCTTTTCCTGACATTCACTGTAAAA
CATTCAGGGGTCCTACCATTTCTGTTCAGGAAATCTTGTAGTTTATTGTTATTTAACAGT
ATTAAGTGAAATTTTGTATATTTCATTTTAACTTTATTTGTGAATAGTGATTGTGGCATG
TTTGGGGTGTTATTTTAATATTTCACGATATTGAAATTTTAATTTTTTTAAAAATTTTTT
TCTGGAAGAAACAGATTCATGTGTAATGGTGAATATTGGACCACTACTGCTTTTCCAATT
TGTAAATTGGTTTTATGTTAAACTCTGTAGCCTAACATACTGCTGTTAATTTCTAACTGA
CGGACATGTATTAATATTGTACTTTGAAGGTTATAAATATTATGTGGAAATTCCTCAATT
TTGTTTTGAAATTTATAATAACAAAATCTTCATGTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               434-807, + strand, RNAz p=0.989234
               

               
               1820-1973, - strand, RNAz p=0.939897

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               434-807, + strand, RNAz p=0.989234
               

               
               1820-1973, - strand, RNAz p=0.939897

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_002595, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_002595, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-2076, gnl|bosTau2|chr5 (36769313-36771371)
               

               
               3-2076, gnl|Hg17|chr12 (95176848-95174806)
               

               
               3-2076, gnl|Mm7|chr10 (92797966-92800022)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-2076, gnl|bosTau2|chr5 (36769313-36771371)
               

               
               3-2076, gnl|Hg17|chr12 (95176848-95174806)
               

               
               3-2076, gnl|Mm7|chr10 (92797966-92800022)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               tra (0.369276)
               

               
               fhi (0.339155)
               

               
               fco (0.314416)
               

               
               ret (0.257467)
               

               
               sag (0.182715)
               

               
               tbr (0.154178)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.369276)
               

               
               fhi (0.339155)
               

               
               fco (0.314416)
               

               
               ret (0.257467)
               

               
               sag (0.182715)
               

               
               tbr (0.154178)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	434-807, + strand, RNAz p=0.989234
	1820-1973, - strand, RNAz p=0.939897

	3-2076, gnl\|bosTau2\|chr5 (36769313-36771371)
	3-2076, gnl\|Hg17\|chr12 (95176848-95174806)
	3-2076, gnl\|Mm7\|chr10 (92797966-92800022)

	tra (0.369276)
	fhi (0.339155)
	fco (0.314416)
	ret (0.257467)
	sag (0.182715)
	tbr (0.154178)
	hyp (0.142837)
	ute (0.132784)
	kid (0.129735)
	ebs (0.118301)
	spc (0.113366)
	cty (0.10408)
	eje (0.0988338)