Non-Coding RNA Search

Ss1.1-Pig4-TMW8038E13.5

Sequence:


               
               GGAGAAGGAGGTGCTGCTGGAGATGATCCACAGCATCCAGAACAGCCAGGACATGCGGCA
GATCAGCGAAGGGGAAAGGGAAGAACTAAACCTGACTGCAAACCGTCTGATGGGACGAAC
ACTGACCGTTGAAGTTTCGGTGGAAACAATTAGGAACCCCCAGCAGCAGGAGTCCCTCAA
GCAAGCCACCAGGATCATCGACGAAGTGGTGAGCAAGTTTCTGGATGACCTGGGAAATGC
CAAGAGTCACCTCATGTCACTGTACAGCGCCTGTTCTTCCGAGGTGCCTGCCGGGCCCGT
GGATCAGAAGTTCCAGTCCATAGTGATTGGCTGTGCTCTTGAAGATCAGAAGAAAATTAA
GAGAAGGCTAGAGACCCTGCTTAGGAACATTGAAAACTCTGACAAGGCCATCAAGCTGCT
GGAGCATTCTAAAGGGGCTTCCAAAACCCTGCAGCAGAACACCGAGAGCAGGTTCAATTA
GTGTTCAGCCTAAGAGCCCTTGAAATAATGGCGTAGAAATGCTAACATACTAGTGCAAGT
GTTAATTAACTAGTCCTGTATGTTAGGCACAACTCCCGTAACACTGATAGTGGCTTCCAG
TGAGGGACATGTCCCAGTGTTGTTAGTTTTATGAATAACAATTAAAACTAGCAATATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGAAGGAGGTGCTGCTGGAGATGATCCACAGCATCCAGAACAGCCAGGACATGCGGCA
GATCAGCGAAGGGGAAAGGGAAGAACTAAACCTGACTGCAAACCGTCTGATGGGACGAAC
ACTGACCGTTGAAGTTTCGGTGGAAACAATTAGGAACCCCCAGCAGCAGGAGTCCCTCAA
GCAAGCCACCAGGATCATCGACGAAGTGGTGAGCAAGTTTCTGGATGACCTGGGAAATGC
CAAGAGTCACCTCATGTCACTGTACAGCGCCTGTTCTTCCGAGGTGCCTGCCGGGCCCGT
GGATCAGAAGTTCCAGTCCATAGTGATTGGCTGTGCTCTTGAAGATCAGAAGAAAATTAA
GAGAAGGCTAGAGACCCTGCTTAGGAACATTGAAAACTCTGACAAGGCCATCAAGCTGCT
GGAGCATTCTAAAGGGGCTTCCAAAACCCTGCAGCAGAACACCGAGAGCAGGTTCAATTA
GTGTTCAGCCTAAGAGCCCTTGAAATAATGGCGTAGAAATGCTAACATACTAGTGCAAGT
GTTAATTAACTAGTCCTGTATGTTAGGCACAACTCCCGTAACACTGATAGTGGCTTCCAG
TGAGGGACATGTCCCAGTGTTGTTAGTTTTATGAATAACAATTAAAACTAGCAATATTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61812889|ref|XP_582502.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61812889|ref|XP_582502.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               389-543, - strand, RNAz p=0.82105

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               389-543, - strand, RNAz p=0.82105

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               70-660, gnl|bosTau2|chr23 (2218991-2219577)
               

               
               70-660, gnl|canFam2|chr12 (27368973-27369372)
               

               
               70-660, gnl|danRer3|chr14 (22771303-22770928)
               

               
               70-660, gnl|dasNov1|scaffold_118260 (4161-3811)
               

               
               70-660, gnl|echTel1|scaffold_177936 (241-641)
               

               
               70-660, gnl|fr1|chrUn (83422705-83423080)
               

               
               70-660, gnl|galGal2|chr3 (85068467-85068101)
               

               
               70-660, gnl|hg17|chr6 (57156526-57156905)
               

               
               70-660, gnl|Hg17|chr6 (57156533-57157129)
               

               
               70-660, gnl|loxAfr1|scaffold_40660 (19710-19311)
               

               
               70-660, gnl|mm7|chr1 (33970098-33969708)
               

               
               70-660, gnl|Mm7|chr1 (33970078-33969497)
               

               
               70-660, gnl|monDom2|scaffold_0 (178102469-178102065)
               

               
               70-660, gnl|oryCun1|scaffold_215129 (88397-87998)
               

               
               70-660, gnl|panTro1|chr5 (58408839-58409218)
               

               
               70-660, gnl|rheMac2|chr4 (56819441-56819825)
               

               
               70-660, gnl|rn3|chr9 (32493908-32493518)
               

               
               70-660, gnl|tetNig1|chr17 (4286685-4286315)
               

               
               70-660, gnl|xenTro1|scaffold_833 (482977-482617)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               70-660, gnl|bosTau2|chr23 (2218991-2219577)
               

               
               70-660, gnl|canFam2|chr12 (27368973-27369372)
               

               
               70-660, gnl|danRer3|chr14 (22771303-22770928)
               

               
               70-660, gnl|dasNov1|scaffold_118260 (4161-3811)
               

               
               70-660, gnl|echTel1|scaffold_177936 (241-641)
               

               
               70-660, gnl|fr1|chrUn (83422705-83423080)
               

               
               70-660, gnl|galGal2|chr3 (85068467-85068101)
               

               
               70-660, gnl|hg17|chr6 (57156526-57156905)
               

               
               70-660, gnl|Hg17|chr6 (57156533-57157129)
               

               
               70-660, gnl|loxAfr1|scaffold_40660 (19710-19311)
               

               
               70-660, gnl|mm7|chr1 (33970098-33969708)
               

               
               70-660, gnl|Mm7|chr1 (33970078-33969497)
               

               
               70-660, gnl|monDom2|scaffold_0 (178102469-178102065)
               

               
               70-660, gnl|oryCun1|scaffold_215129 (88397-87998)
               

               
               70-660, gnl|panTro1|chr5 (58408839-58409218)
               

               
               70-660, gnl|rheMac2|chr4 (56819441-56819825)
               

               
               70-660, gnl|rn3|chr9 (32493908-32493518)
               

               
               70-660, gnl|tetNig1|chr17 (4286685-4286315)
               

               
               70-660, gnl|xenTro1|scaffold_833 (482977-482617)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               che (0.408942)
               

               
               cte (0.29274)
               

               
               hlv (0.278513)
               

               
               sto (0.179824)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               bla (0.124347)
               

               
               ldo (0.0970026)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.408942)
               

               
               cte (0.29274)
               

               
               hlv (0.278513)
               

               
               sto (0.179824)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               bla (0.124347)
               

               
               ldo (0.0970026)

	70-660, gnl\|bosTau2\|chr23 (2218991-2219577)
	70-660, gnl\|canFam2\|chr12 (27368973-27369372)
	70-660, gnl\|danRer3\|chr14 (22771303-22770928)
	70-660, gnl\|dasNov1\|scaffold_118260 (4161-3811)
	70-660, gnl\|echTel1\|scaffold_177936 (241-641)
	70-660, gnl\|fr1\|chrUn (83422705-83423080)
	70-660, gnl\|galGal2\|chr3 (85068467-85068101)
	70-660, gnl\|hg17\|chr6 (57156526-57156905)
	70-660, gnl\|Hg17\|chr6 (57156533-57157129)
	70-660, gnl\|loxAfr1\|scaffold_40660 (19710-19311)
	70-660, gnl\|mm7\|chr1 (33970098-33969708)
	70-660, gnl\|Mm7\|chr1 (33970078-33969497)
	70-660, gnl\|monDom2\|scaffold_0 (178102469-178102065)
	70-660, gnl\|oryCun1\|scaffold_215129 (88397-87998)
	70-660, gnl\|panTro1\|chr5 (58408839-58409218)
	70-660, gnl\|rheMac2\|chr4 (56819441-56819825)
	70-660, gnl\|rn3\|chr9 (32493908-32493518)
	70-660, gnl\|tetNig1\|chr17 (4286685-4286315)
	70-660, gnl\|xenTro1\|scaffold_833 (482977-482617)

	che (0.408942)
	cte (0.29274)
	hlv (0.278513)
	sto (0.179824)
	ssp (0.13552)
	ste (0.135208)
	bla (0.124347)
	ldo (0.0970026)